青花菜ProDH基因的克隆及功能鉴定

脯氨酸是水分胁迫植物中最常见的渗透保护物质之一,脯氨酸脱氢酶(ProDH)是存在于线粒体内的催化脯氨酸降解的关键酶,构建RNAi表达载体转化青花菜可以抑制脯氨酸分解提高其抵抗干旱胁迫和盐胁迫的能力。本研究利用同源重组和RACE技术克隆青花菜脯氨酸脱氢酶基因(ProDH),以酶切、连接的方法利用载体pFGC1008构建植物RNAi表达载体pFGC-PDHi。序列分析表明,本文首次克隆了1595bp的青花菜脯氨酸脱氢酶基因cDNA全长,该序列编码498个氨基酸;序列比对发现该核酸序列与拟南芥、甘蓝型油菜、芜菁分别有83.26%、89.07%和97.73%的同源性,其氨基酸序列和拟南芥、甘蓝型油菜、芜菁分别有89.78%、91.38%和98.80%的同源性。测序和酶切鉴定表明青花菜ProDH基因RNA干扰表达载体已经构建成功,并将其转化青花菜得到转化株,经PCR检测,转化株均为阳性株,证明干扰载体的T-DNA区已经成功地整合到了青花菜基因组中。研究还发现在外源的L-脯氨酸存在时,转化株的脯氨酸脱氢酶的活性受到了明显的抑制。本研究为青花菜的抗旱育种提供了非常有价值的新种质材料。     

大豆转录因子GmC2H2基因转化拟南芥效果分析

GmC2H2转录因子基因是本实验室获得的一个编码172个氨基酸携带516bp核苷酸的转录因子,属于经典C2H2型锌指蛋白.通过构建植物表达载体GmC2H2-pCAMBIA1304,借助优化的Floral-dip法转化模式植物拟南芥,经潮霉素Hygromycine( 45-50 mg/L)抗性筛选获得转基因拟南芥植株.GUS组织染色分析表明,GmC2H2基因在生长12d的转基因拟南芥幼苗中,表达部位主要集中在根部.对转基因拟南芥进行了低温(1℃)和脱落酸(200 μmol/L)胁迫处理,测定其生理生化指标,通过real-time qPCR确定目的基因在转基因拟南芥中的表达情况.结果表明,携带GmC2H2目的基因的转基因拟南芥中脯氨酸和可溶性糖水平要高于野生型植株,而丙二醛水平要低于野生型,在抗逆性方面明显优于野生型拟南芥植株;并且胁迫处理下的转基因拟南芥中GmC2H2基因的表达量要高于未胁迫处理的转基因植株,说明GmC2H2基因的表达受低温和ABA的诱导,初步明确了该转录因子基因的功能.     

外源脯氨酸对盐胁迫下甜瓜脯氨酸代谢的影响

为探明外源脯氨酸对盐胁迫下甜瓜脯氨酸代谢的影响,以甜瓜品种‘雪美’为材料采用营养液栽培,对盐胁迫(100mmol·L-1 NaCl)、盐胁迫下添加外源脯氨酸(100mmol·L-1 NaCl+0.2mmol·L-1 Proline)以及对照3种处理后甜瓜幼苗叶片脯氨酸(Pro)含量、吡咯啉-5-羧酸合成酶(P5CS)、鸟氨酸转氨酶(OAT)和脯氨酸脱氢酶(ProDH)活性进行测定,并对OAT和ProDH基因进行克隆及半定量表达分析。结果显示:与对照相比较,盐胁迫条件下甜瓜幼苗叶片内Pro含量显著增加,P5CS活性增幅大于OAT活性,OAT基因表达量大部分时段内没有增加,ProDH活性下降,ProDH基因表达量减少;盐胁迫下添加外源脯氨酸进一步使幼苗叶片内Pro含量增加、OAT、ProDH活性提高、P5CS活性降低,并且使OAT基因表达量迅速增加、ProDH基因表达量先增加后回落。研究表明,盐胁迫条件下,甜瓜幼苗体内脯氨酸积累主要是通过增强脯氨酸的谷氨酸合成途径和抑制脯氨酸降解来实现;适量外源脯氨酸可以增强盐胁迫幼苗脯氨酸的鸟氨酸合成途径,但对谷氨酸合成途径有一定的抑制作用;通过调节合成和降解2种代谢途径进一步提高了脯氨酸含量,从而增强甜瓜幼苗耐盐胁迫能力。     

蒙古冰草MwMYB4基因功能鉴定

MwMYB4基因是从蒙古冰草中克隆得到的MYB类转录因子家族成员之一。该研究以转MwMYB4基因的拟南芥后代为材料,通过在干旱和低温胁迫下对转基因植株进行表型分析、理化指标测试和分子鉴定,分析并验证MwMYB4基因的功能。结果显示:(1)蒙古冰草MwMYB4基因已成功整合到转基因拟南芥T_1代的基因组中并实现转录水平的表达。(2)转基因拟南芥T_2代植株在干旱胁迫条件下,转基因植株叶片枯黄程度较轻,相对电导率较野生型变化幅度低,脯氨酸含量明显高于野生型对照,且MwMYB4基因的表达量随干旱胁迫时间延长而增加。(3)在低温胁迫条件下,转基因拟南芥叶片的枯白程度明显低于野生型,且MwMYB4基因的表达量随低温胁迫时间增加而增加。研究表明,过量表达蒙古冰草MwMYB4基因能够提高转基因拟南芥对干旱和低温的耐受性,该基因可能在干旱胁迫和低温胁迫调控机制中发挥调控作用,可作为改良农作物和其他牧草抗旱、抗寒性的重要候选基因。     

拟南芥花粉管与柱头互作的乙醇代谢耦合模型

依据拟南芥公开的代谢途径数据库,构建了基于酶与酶的拟南芥代谢网络模型。利用拟南芥花粉管与柱头互作过程中的转录组数据,挖掘出花粉管与柱头在互作过程中的特异表达基因,进一步将特异表达的酶基因匹配到已构建的拟南芥代谢网络中,根据网络拓扑模型中的节点(酶)之间的共表达关联性,最后给出了一个拟南芥花粉管与柱头互作的乙醇代谢耦合模型。     

红花CHS基因的过表达提高了拟南芥黄酮含量

该研究旨在获得红花查尔酮合酶(chalcone synthase,CHS)基因全长片段,并在拟南芥中进行过表达,初步验证该基因的功能根据红花转录物测序结果中获得的中间序列,采用RT-PCR和cDNA末端快速扩增技术(rapid amplifi cation of cDNA ends,RACE)方法从红花花瓣中克隆到1个CHS基因的全长cDNA,命名为Ct CHS1,全长序列1 360 bp。生物信息学分析表明,该基因具有完整的开放阅读框(open reading frame,ORF),共1 113 bp,编码370个氨基酸。亚细胞定位预测结果显示,该基因编码的蛋白质定位于细胞质。结合其他物种的CHS基因构建系统树表明,Ct CHS1具有高度保守性,其与水母雪莲花的亲缘关系最近。荧光定量PCR(Real-time PCR)分析表明,Ct CHS1基因在吉红油姊妹系的衰落期和吉红一号的盛花期表达量最高。该研究成功构建了含有Ct CHS1基因的植物表达载体,并在拟南芥中进行过表达,获得了高黄酮含量的转基因拟南芥T2株系。结果表明,过表达红花CHS基因可以提高拟南芥中的黄酮含量,为后续该基因的功能验证奠定基础。     

外源水杨酸对盐胁迫下小桐子幼苗脯氨酸代谢的影响

以小桐子幼苗为材料,设置盐胁迫(200mmol·L-1 NaCl)和外源水杨酸处理(0~2.0mmol·L-1 SA)水培试验,通过检测幼苗叶片脯氨酸含量、脯氨酸代谢关键酶活性及相关代谢酶基因的表达水平,研究了外源水杨酸对盐胁迫下小桐子幼苗脯氨酸代谢机理的影响。结果显示:(1)外源0.9mmol·L-1 SA处理可显著提高盐胁迫下小桐子幼苗的脯氨酸含量,上调脯氨酸合成关键酶Δ1-吡咯琳-5-羧酸合成酶(P5CS)和鸟氨酸转氨酶(OAT)活性,以及上调JcP5CS和JcOAT基因的表达水平。(2)SA也显著抑制了脯氨酸降解酶ProDH的活性及JcProDH基因的表达水平。(3)SA处理还显著提高了盐胁迫下小桐子幼苗的组织活力,降低了叶片电解质渗漏率和丙二醛(MDA)含量。研究发现,外源SA可通过活化脯氨酸合成的谷氨酸途径和鸟氨酸途径,以及抑制脯氨酸的降解途径来促进盐胁迫下小桐子幼苗脯氨酸的积累;外源SA处理也可提高小桐子幼苗的耐盐性,且这种提高可能与SA诱导脯氨酸的积累密切相关。     

过表达大豆类受体蛋白激酶基因RLPK2促进转基因拟南芥叶片的衰老北大核心CSCD

大豆RLPK2基因(GenBank登录号:AY687391)是一个编码N-末端富含亮氨酸重复序列的类受体蛋白激酶基因。为分析大豆RLPK2基因的功能,该研究以野生型拟南芥和大豆RLPK2基因过表达拟南芥植株为材料,通过农杆菌介导法转化野生型拟南芥,构建了大豆RLPK2基因过表达载体,分析了叶片衰老过程中叶绿素荧光参数、抗氧化酶活性及衰老相关基因表达量的变化。结果表明:(1)无论是野生型还是转基因拟南芥,随着叶片衰老进程的进行,光系统Ⅱ(PSⅡ)的最大光化学效率(F_(v)/F_(m))、PSⅡ实际光化学效率(Φ_(PSⅡ))、光化学淬灭系数(qP)和光合电子传递速率(ETR)均呈下降趋势,但后者下降趋势更明显;(2)激发压(1-qP)在叶片衰老前期的变化较为平稳,后期则急剧增加,且转基因型比野生型拟南芥增加更明显;(3)在叶片衰老的各个时期,转基因拟南芥叶片丙二醛(MDA)含量均显著高于野生型,而超氧化物岐化酶(SOD)、过氧化物酶(POD)和过氧化氢酶(CAT)活性均显著低于野生型;(4)实时荧光定量PCR检测结果表明,RLPK2转基因拟南芥中衰老标志基因ATSAG12,衰老关键转录因子ATNAP、ATWRKY6和叶绿素降解关键酶编码基因ATACD1表达量显著上调。综上认为,大豆类受体蛋白激酶基因RLPK2参与调控植物叶片衰老进程,其表达对叶片衰老具有促进作用。     

低氧环境对三阴性乳腺癌细胞糖代谢途径的重编程

代谢改变是癌细胞的特征之一。研究表明,低氧会使癌细胞的糖代谢发生改变,但是更详细的分子机制仍有待进一步研究。本研究利用转录物组测序技术(RNA-sequencing,RNA-seq)和生物信息学分析发现,低氧导致BT549细胞中334个基因和MDA-MB-231细胞中215个基因在转录水平的表达改变。这些表达变化的基因多与糖代谢相关。进一步分析RNA-seq数据并应用Western 印迹、酶活性检测和代谢产物定量测定的结果显示,低氧通过升高BT549细胞中葡萄糖转运蛋白1(GLUT1)和MDA-MB-231细胞中GLUT1和GLUT3的表达以增加葡萄糖的摄入;低氧使催化糖的无氧氧化途径几乎全部反应的酶都至少有一种同工酶或酶蛋白亚基,以及调节酶6-磷酸果糖-2-激酶/果糖-2,6-二磷酸酶3(PFKFB3)和4(PFKFB4)同工酶的表达增加来促进了糖的无氧氧化;低氧还通过增加调节丙酮酸脱氢酶激酶1(PDK1)和3(PDK3)同工酶基因的表达,以及降低关键酶异柠檬酸脱氢酶3(IDH3)同工酶、琥珀酸脱氢酶B亚基和D亚基的表达来减少糖的有氧氧化途径进行;低氧可能还增加磷酸戊糖途径的关键酶葡糖-6-磷酸脱氢酶、糖原合成途径的关键酶糖原合酶GYS1同工酶的表达以促进这2条途径的进行,而对糖异生和糖原分解代谢途径酶基因的表达影响较小。生物信息学分析乳腺癌组织样本在线数据库中糖代谢途径酶基因在转录水平表达结果与细胞研究结果基本一致。总之,该文系统分析了低氧对糖代谢6条代谢途径中全部酶以及2种重要调节酶的影响,可见低氧会通过改变这些酶的同工酶或亚基的基因表达使糖代谢途径进行重编程,这对进一步认识低氧环境下癌细胞糖代谢的分子机制具有一定的意义。     

异源表达CiRS基因拟南芥的黄酮代谢及抑菌能力研究

白藜芦醇合成酶(resveratrol synthase,RS)是查耳酮合酶基因家族的一个重要酶,在植物体内催化白藜芦醇的生成。白藜芦醇是植物产生的一种非黄酮多酚类代谢产物,是植物在受到生物和非生物胁迫时产生的植物抗毒素,已证实具有多种生理活性。从转录组数据库中筛选获得注释为CHS基因的CDS序列,以中间锦鸡儿cDNA为模板,克隆得到基因全长。序列分析、系统进化分析和转该基因拟南芥研究结果表明,该基因为RS基因,因此将其命名为CiRS(GenBank登录号MF678590)。qRT-PCR检测分析发现,中间锦鸡儿CiRS基因的表达受到干旱、NaCl、紫外线等胁迫诱导。异源表达CiRS基因抑制了拟南芥自身At CHS基因的表达。同时转CiRS基因拟南芥的抑菌活性强于野生型。这些结果均证实了中间锦鸡儿CiRS基因在转基因拟南芥中发挥了相应的功能。     

Oscillation and regulation of proline content by P5CS and ProDH gene expressions in the light/dark cycles in Arabidopsis thaliana L

The fluctuation of proline content, and protein and mRNA levels of delta1-pyrroline-5-carboxylate synthetase (P5CS) and proline dehydrogenase (ProDH), both of which are involved in proline biosynthesis and degradation, in the shoots of Arabidopsis grown in light/dark cycles were demonstrated under salt-stressed and unstressed conditions. Proline content, as well as proteins and mRNAs of these enzymes, clearly oscillated in the light/dark cycles under the stressed and unstressed conditions. A reciprocal relationship between P5CS and ProDH was observed. Protein levels of P5CS and ProDH were well synchronized with their mRNA levels, although the fluctuation of protein levels was not as significant as that of their mRNA levels. Both mRNA and protein levels of the two enzymes as well as the proline content did not oscillate under the continuous light or the dark conditions. Thus, P5CS and ProDH gene expressions seemed to be involved in light irradiation. Moreover, relative water content (RWC) in the plants oscillated in the light/dark cycles. The fluctuations of proline content in shoot reversely responded to that of RWC. It is suggested that the expression of two genes responds sensitively to a subtle change of cellular water status, and accumulated proline keeps the osmotic balance between cells and the outer environment.     

Proline dehydrogenase is a positive regulator of cell death in different kingdoms

Proline dehydrogenase (ProDH) catalyzes the flavin-dependent oxidation of Pro into Δ1-pyrroline-5-carboxylate (P5C). This is the first of the two enzymatic reactions that convert proline (Pro) into glutamic acid (Glu). The P5C thus produced is non-enzymatically transformed into glutamate semialdehyde (GSA), which acts as a substrate of P5C dehydrogenase (P5CDH) to generate Glu. Activation of ProDH can generate different effects depending on the behavior of other enzymes of this metabolism. Under different conditions it can generate toxic levels of P5C, alter the cellular redox homeostasis and even produce reactive oxygen species (ROS). Recent studies indicate that in Arabidopsis, the enzyme potentiates the oxidative burst and cell death associated to the Hypersensitive Responses (HR). Interestingly, activation of ProDH can also produce harmful effects in other organisms, suggesting that the enzyme may play a conserved role in the control of cell death.Key words: proline, proline dehydrogenase, cell death, hypersensitive response (HR), reactive oxygen species (ROS)     

Proline dehydrogenase from Pseudomonas fluorescence: gene cloning, purification, characterization and homology modeling

The gene encoding proline dehydrogenase (ProDH) from Pseudomonas fluorescence was isolated using PCR amplification and cloned into pET23a expression vector. The expression of the recombinant target enzyme was induced by addition of IPTG. The produced His-fusion enzyme was purified and its kinetic properties were studied. The 3D structure modeling was also performed to identify key amino acids involved in FAD-binding and catalysis. The PCR product contained a 1033 bp open reading frame encoding 345 amino acid residue polypeptide chain. SDS-PAGE analysis revealed a MW of 40 kDa, whereas the native enzyme exhibited a MW of 40 kDa suggesting a monomeric protein. The K(m) and V(max) values of the P. fluorescence ProDH were estimated to be 35 mM and 116 micromol/min, respectively. ProDH activity was stable at alkaline pH and the highest activity was observed at 30 degrees C and pH 8.5. The modeling analysis of the three dimensional structure elucidated that Lys-173 and Asp-202, which were oriented near the hydroxyl group of the substrate, were essential residues for the ProDH activity. This study, to our knowledge, is the first data on the cloning and biochemical and structural properties of P. fluorescence ProDH.     

Ornithine-delta-aminotransferase and proline dehydrogenase genes play a role in non-host disease resistance by regulating pyrroline-5-carboxylate metabolism-induced hypersensitive response

Non-host disease resistance involves the production of hypersensitive response (HR), a programmed cell death (PCD) that occurs at the site of pathogen infection. Plant mitochondrial reactive oxygen species (ROS) production and red-ox changes play a major role in regulating such cell death. Proline catabolism reactions, especially pyrroline-5-carboxylate (P5C) accumulation, are known to produce ROS and contribute to cell death. Here we studied important genes related to proline synthesis and catabolism in the defence against host and non-host strains of Pseudomonas syringae in Nicotiana benthamiana and Arabidopsis. Our results show that ornithine delta-aminotransferase (δOAT) and proline dehydrogenases (ProDH1 and ProDH2) are involved in the defence against non-host pathogens. Silencing of these genes in N. benthamiana delayed occurrence of HR and favoured non-host pathogen growth. Arabidopsis mutants for these genes compromised non-host resistance and showed a decrease in non-host pathogen-induced ROS. Some of the genes involved in proline metabolism were also induced by a pathogen-carrying avirulence gene, indicating that proline metabolism is influenced during effector-triggered immunity (ETI). Our results demonstrate that δOAT and ProDH enzyme-mediated steps produce ROS in mitochondria and regulate non-host HR, thus contributing to non-host resistance in plants.     

Proline dehydrogenase from Pseudomonas fluorescens: Gene cloning, purification, characterization and homology modeling

The gene encoding proline dehydrogenase (ProDH) from Pseudomonas fluorescens was isolated using PCR amplification and cloned into pET23a expression vector. The expression of the recombinant target enzyme was induced by addition of IPTG. The produced His-fusion enzyme was purified and its kinetic properties were studied. The 3D structure modeling was also performed to identify key amino acids involved in FAD-binding and catalysis. The PCR product contained a 1033 bp open reading frame encoding 345 amino acid residue polypeptide chain. SDS-PAGE analysis revealed a MW of 40 kDa, whereas the native enzyme exhibited a MW of 40 kDa suggesting a monomeric protein. The K _m and V _max values of the P. fluorescens ProDH were estimated to be 35 mM and 116 μmol/min, respectively. ProDH activity was stable at alkaline pH and the highest activity was observed at 30°C and pH 8.5. The modeling analysis of the three dimensional structure elucidated that Lys-173 and Asp-202, which were oriented near the hydroxyl group of the substrate, were essential residues for the ProDH activity. This study, to our knowledge, is the first data on the cloning and biochemical and structural properties of P. fluorescens ProDH.