来源于青霉菌聚半乳糖醛酸酶的筛选及其在大肠杆菌中的异源表达

聚半乳糖醛酸酶属于果胶水解酶类,在食品、饲料、纺织和造纸等工业生产中应用广泛。本研究筛选获得一株能分解果胶的青霉菌Penicillium sp. FJ2,使用简并引物PCR和TAIL-PCR方法从该菌中克隆得到一个聚半乳糖醛酸酶基因pgp1。pgp1基因全长1 225 bp,包含2个内含子,其cDNA全长1 104 bp,编码367个氨基酸和一个终止密码子。将pgp1基因连接pET-30a(+)载体并转化大肠杆菌BL21(DE3),重组蛋白以包涵体形式获得表达。通过尿素溶解和梯度稀释方法对重组蛋白PGP1进行了重折叠复性试验,复性后的PGP1聚半乳糖醛酸酶活力达到12.9 U/mL,比活力为583 U/mg。     

麻类脱胶高效菌株果胶裂解酶基因克隆与表达

【目的】克隆麻类脱胶高效菌株Dickeya sp.DCE-01的果胶裂解酶基因并进行原核表达,对表达产物进行纯化和酶学性质研究。【方法】根据该菌株全基因组序列预测的果胶裂解酶基因Q59419设计引物,PCR扩增后将该基因连接到pEASY-E1和pACYCDuet-1载体上,导入E.coli BL21(DE3)进行表达。选择酶活力高的阳性克隆子进行大量诱导表达后,采用超滤和Sephadex G-100凝胶层析两步法纯化出果胶裂解酶,研究其酶学性质。【结果】克隆到果胶裂解酶基因pel(GenBank登录号:JX964997),其序列全长1 128 bp,编码375个氨基酸。pACYCDuet-1-pel-BL表达胞外果胶裂解酶活力最高,发酵液粗酶活达298.8 IU/mL。其最适反应温度为50°C,最适pH为9.0;保温1 h,酶活稳定温度≤45°C,稳定pH为9.0?10.0。酶催化作用依赖于Ca2+,其最适作用浓度为2 mmol/L;Zn2+、Ca2+和NH4+促进酶活力,Fe3+和Pb2+严重抑制酶活力;聚半乳糖醛酸钠为该酶的最适底物。【结论】从麻类脱胶高效菌株中发掘到碱性果胶裂解酶基因,其表达产物在生物质加工过程中具有重要工业化应用前景。     

腊样芽孢杆菌低温淀粉酶基因的克隆表达及酶学性质研究

从废弃的淀粉堆中筛选到一株产低温淀粉酶的蜡样芽孢杆菌(Bacillus cereus)GXBC-1,通过同源保守序列比对,从中克隆到一个淀粉酶基因.该基因全长为1764bp,编码588个氨基酸,分子量约为64kD.将基因克隆到大肠杆菌进行表达及酶学性质研究,该重组酶最适温度为35℃,在20℃仍具有53%的活力;最适pH...     

蜂房哈夫尼菌植酸酶基因appA的克隆、表达及酶学性质研究

从蜂房哈夫尼菌(Hafniaalvei)中克隆获得一个植酸酶编码基因appA,该基因全长1335bp,编码444个氨基酸,其中前33个氨基酸为信号肽,成熟蛋白的理论分子量为45.2kD。将基因appA克隆到大肠杆菌E.coli表达载体pET-22b( ),并在大肠杆菌中表达,表达产物具有植酸酶活性。对表达的酶蛋白进行纯化,并初步研究了该酶的酶学性质,结果表明:酶的作用最适pH值为4.5;在pH2.0~10.0范围内,酶活性保留80%以上;酶的作用最适温度为60℃;酶的比活性为356.7U/mg,酶动力学分析表明其Km为0.49mmol/L,Vmax为238U/mg;该酶对胰蛋白酶和胃蛋白酶有一定的抗性。该研究为哈夫尼菌属来源植酸酶的首次报道。     

宏基因组来源果胶酸裂解酶在毕赤酵母中的表达及应用

果胶酸裂解酶可用于含果胶废水的处理、纸浆漂白以及棉麻纺织品的生物精炼等。基于高通量宏基因组测序技术,从富含果胶土壤宏基因组中挖掘得到一个果胶酸裂解酶基因pela。将pela连接表达载体pPIC9转化毕赤酵母Pichia pastoris GS115。在3 L发酵罐水平,甲醇诱导10 h后,培养基中果胶酸裂解酶活力达到10.8 U/mL。重组PELA的最适温度为45℃,最适pH为9.0,在pH 7.5~11.0具有良好的稳定性。PELA的比活力为244.12 U/mg,以聚半乳糖醛酸为底物时催化反应的Km和Vmax分别为0.26 mg/mL和488.40 μmol/min·mg。EDTA及金属离子Cd2+、Zn2+、Mn2+、Cu2+、Fe3+能够高度抑制酶的活性,1 mmol/L Ca2+和2 mmol/L K+对酶活力有促进作用。将重组PELA作用于苎麻纤维4 h后,纤维质量损失率达到9.2%,苎麻纤维分散度和白度都明显提高。结果表明从宏基因组来源的果胶酸裂解酶PELA在苎麻脱胶中具有良好的应用潜力。     

重组菌产碱性果胶酯裂解酶酶学性质研究

利用盐析-透析-色谱流程建立快速高效纯化工程菌E.coli JM109(pHsh PL)所产碱性果胶酯裂解酶(PL)的方法,纯化后酶达到电泳纯,比酶活为1079U/mg.重组菌所产PL酶促反应适宜的pH为9～10,适宜温度为50～66 ℃,与酶基因来源野生菌所产PL相比,重组菌所产PL适宜pH范围有所扩大,并保持了野生菌PL的热稳定性.通过金属离子种类、浓度及存在时间对PL酶活力影响考察发现:在考察的离子中除Mg2 对酶活有较好的促进作用外,其余对重组菌PL均有抑制作用,其中Fe2 对酶活力抑制作用最强.该酶的Km值为20.93 mg/L,Vmax为105.3 μmol/min,反应活化能Ea为21.74 kJ/mol.对重组菌所产PL热稳定动力学进行分析,发现有底物情况下的失活常数kd(0.02 min-1)小于无底物情况下的失活常数kd(0.0342 min-1),说明当酶与底物结合形成复合物时对酶活具有保护作用.利用HPLC-ESI-MS对重组菌所产PL酶解产物进行测定发现,产物含有不饱和二聚半乳糖醛酸(m/z 350.82)和不饱和三聚半乳糖醛酸(m/z 527.04),同时测定结果中没有发现不饱和半乳糖醛酸单体(m/z 175),可以初步推测重组菌PL不能以不饱和二聚半乳糖醛酸和不饱和三聚半乳糖醛酸为底物进一步裂解.     

嗜热子囊菌原变种Thermoascus aurantiacus var.aurantiacus热稳定几丁质酶的克隆表达及活性研究

研究通过RT-PCR和Tail-PCR技术从嗜热子囊菌原变种Thermoascus aurantiacus var.aurantiacus中克隆了一个几丁质酶同源基因。该基因全长1,253bp,包含一个由1,197个碱基构成的开放阅读框,编码398个氨基酸。序列比对分析表明,该基因编码蛋白属于糖苷水解酶18家族的几丁质酶。利用基因重组的方法构建酵母分泌型表达载体,并转化毕赤酵母。在甲醇的诱导下,重组蛋白得到了高效表达,第6天的表达量最高,达到0.433g/L,酶活力为28.96U/mg,同时对表达的几丁质酶进行了纯化,SDS-PAGE检测该蛋白的分子量为43.9kDa。该几丁质酶的最适反应温度为60℃,最适反应pH值为8.0,70℃处理30min仍有45%的相对酶活,具有较好的热稳定性及工业应用价值。     

嗜酸乳酸杆菌ATCC 4356菌株异源二聚体b-半乳糖苷酶的克隆表达

嗜酸乳酸杆菌(Lactobacillus acidophilus)的异源二聚体β-半乳糖苷酶属于糖苷水解酶2家族,由两个部分重叠、协同翻译的基因编码(lacL和lacM).[目的]克隆表达该酶并测定其酶学特性.[方法]参照已全基因组测序的嗜酸乳酸杆菌NCFM菌株,以嗜酸乳酸杆菌ATCC4356菌株基因组为模板,将lacL的RBS到lacM的终止子之间的序列(2834 bp)克隆到pQE31质粒上,并电转化JM109菌株.以下列步骤纯化表达产物:硫酸铵分级沉淀、阴离子交换、亲和层析和凝胶排阻层析.以凝胶排阻层析测定纯化酶的天然分子量,以邻硝基苯基半乳糖为底物测定其酶学特性.[结果]实现了该酶在JM109菌株中的可溶性表达.其氨基酸序列有一处不同于嗜酸乳酸杆菌NCFM菌株,即其大亚基(LacL)的第512位氨基酸不是组氨酸而是精氨酸.纯化酶比活力为226 U/mg蛋白,天然分子量为96.3±4.6 kDa,最适pH为7,最适温度为49℃,Km和Vmax值分别是:2.18±0.12 mmol/L,273±5 U/mg蛋白.     

普鲁兰酶基因在毕赤酵母中组成型表达及定点突变研究

合成Bacillus acidopullulyticus的全长普鲁兰酶基因并在毕赤酵母X-33中进行组成型外分泌表达,重组酶的最适作用温度为60℃,最适作用pH值为4.5~5.0,酶比活力为2.0 U/mg.采用重叠延伸PCR方法对普鲁兰酶基因进行定点突变,实验结果表明,625、626位点Ala、Leu氨基酸突变为Leu、Tyr氨基酸后,该酶的催化效率有所降低,而Gln487Ala的突变对催化效率没有较大的影响.该研究结果为探究关键氨基酸区域对催化效率的影响提供了一定的理论和实验基础.     

嗜热子囊菌JCM12803的α-半乳糖苷酶基因tcgal27A在毕赤酵母中的表达

从嗜热子囊菌(Thermoascus crustaceus)JCM12803克隆α-半乳糖苷酶基因,并对其酶学性质进行系统的研究,旨为获得工业应用性质优良的α-半乳糖苷酶。通过RT-PCR方法从T.crustaceus JCM12803中克隆α-半乳糖苷酶基因序列,并对其酶学性质进行了系统的分析。结果显示,tcgal27A属于糖苷水解酶27家族,基因全长1 918 bp,含有4个内含子,c DNA全长1 419 bp,编码472个氨基酸,预测tcgal27A N端含有24个氨基酸为其可能的信号肽。将TCGal27A在毕赤酵母中成功地进行了表达,所获得的重组TCGal27A具有高比活(336.5 U/mg)及宽泛的底物特异性,对蜜二糖(14.4 U/mg)、棉子糖(9.1 U/mg)、角豆胶(3.6 U/mg)、魔芋粉(1.6 U/mg)、瓜尔豆胶(1.3 U/mg)、水苏糖(0.7 U/mg)都有着不同程度的降解作用。以pNPG为底物时的Km值为1.6mol/m L,Vmax为536.8μmo L/(min·mg)。TCGal27A的最适作用pH为4.5,最适温度为65℃,50℃处理1 h之后酶活力还能保持86.0%。这些结果表明耐高温TCGal27A性质优良,可添加到饲料中,在消化和提高豆粕蛋白能量利用率方面有良好的潜在应用价值。     

Cloning and DNA sequence analysis of a polygalacturonase cDNA from Aspergillus niger RH5344

A 1319 bp long cDNA encoding for a polygalacturonase (EC 3.2.1.15) from Aspergillus niger RH5344 comprises a single open reading frame of 1089 bp which includes the mature protein of 362 amino acids and an NH2-terminal signal peptide of 27 amino acids. The directly determined peptides of the mature polygalacturonase confirmed the sequence information deduced from the cDNA.     

Structural features of a polygalacturonase gene cloned from Aspergillus oryzae KBN616

Abstract A genomic gene encoding a polygalacturonase from Aspergillus oryzae , used in soy sauce production, was cloned and sequenced. The structural gene comprises 1227 bp coding for 363 amino acids with a putative prepropeptide of 28 amino acids and the open reading frame is disrupted by two short introns of 57 bp and 81 bp. The deduced amino acid sequence of the mature protein showed 63, 63, 63 and 64% homology with those of Aspergillus niger polygalacturonase I, Aspergillus niger polygalacturonase II, Aspergillus tubingensis polygalacturonase II and Cochliobolus carbonum polygalacturonase, respectively. There is, however, little homology among fungal, plant and bacterial polygalacturonases.     

Cloning and Characterization of the Microspore Development-Related Gene BcMF2 in Chinese Cabbage Pak-Choi (Brassica campestris L. ssp. chinensis Makino)

For the sake of providing some important information relevant to the study of the molecular mechanism of genic male sterility in plants, gene differential expression in flower buds at different developmental stages, as well as in rosette leaves, florescence leaves, and scapes was analyzed using cDNA amplified fragment length polymorphism (cDNA-AFLP) in the genic male sterile A and fertile B line of Chinese cabbage pak-choi. Following amplification of 125 pairs of primer combinations, 11 differential fragments were obtained, of which eight were from the B line and the other three were from the A line. Of 11 differential fragments, four were verified by Northern hybridization that were expressed preferentially in fertile flower buds. Results of GenBank BLAST showed that one fragment was with unknown function,whereas the other fragments have strong nucleotide sequence similarities with the polygalacturonase (PG)gene, the pectinesterase (PE) gene, and the polygalacturonase inhibitory protein (PGIP4) gene. Only fulllength cDNA from the differential fragment BcMF-A18T16-1 was amplified by rapid amplification of cDNA ends (RACE) and Northern analysis showed that this fragment was expressed only in medium and largesized flower buds of the B line. The full-length cDNA, designated as BcMF2 (Brassica campestris Male Fertile 2), was 1 485 bp long and was composed of a 1 263-bp open reading frame, which had 83% nucleotide similarity to a PG gene from Arabidopsis encoding polygalacturonase. Analysis of the basic structure of the protein revealed that it had one polygalacturonase active site (RVTCGPGHGLSVGS) at 256th site of amino acids and was classified as being a member of family 28 of the glycosyl hydrolases. The role of the BcMF2 gene on microspore development is discussed in the present paper.     

Cloning and Characterization of the Microspore Development-Related Gene BcMF2 in Chinese Cabbage Pak-Choi （Brassica campestris L. ssp. chinensis Makino）

For the sake of providing some important information relevant to the study of the molecular mechanism of genic male sterility in plants, gene differential expression in flower buds at different developmental stages, as well as in rosette leaves, florescence leaves, and scapes was analyzed using cDNA amplified fragment length polymorphism (cDNA-AFLP) in the genic male sterile A and fertile B line of Chinese cabbage pak-choi. Following amplification of 125 pairs of primer combinations, 11 differential fragments were obtained, of which eight were from the B line and the other three were from the A line. Of 11 differential fragments, four were verified by Northern hybridization that were expressed preferentially in fertile flower buds. Results of GenBank BLAST showed that one fragment was with unknown function, whereas the other fragments have strong nucleotide sequence similarities with the polygalacturonase (PG) gene, the pectinesterase (PE) gene, and the polygalacturonase inhibitory protein (PGIP4) gene. Only fulllength cDNA from the differential fragment BcMF-A 18T 16-1 was amplified by rapid amplification of cDNA ends (RACE) and Northern analysis showed that this fragment was expressed only in medium and largesized flower buds of the B line. The full-length cDNA, designated as BcMF2 (Brassica campestris Male Fertile 2), was 1 485 bp long and was composed ofa 1 263-bp open reading frame, which had 83% nucleotide similarity to a PG gene from Arabidopsis encoding polygalacturonase. Analysis of the basic structure of the protein revealed that it had one polygalacturonase active site (RVTCGPGHGLSVGS) at 256th site of amino acids and was classified as being a member of family 28 of the glycosyl hydrolases. The role of the BcMF2gene on microspore development is discussed in the present paper.     

Sequencing and identification of a cDNA clone for tomato polygalacturonase.

The 2a isoenzyme of tomato polygalacturonase was purified from ripe fruit and characterised. The N-terminal amino acid sequence of the protein was determined in order to identify polygalacturonase cDNA clones. The nucleotide sequence of a ripening-related cDNA (pTOM 6) was determined and found to encode the N-terminal sequence of mature polygalacturonase 2a. The complete open reading frame encodes a polypeptide of molecular weight 50,051, including a putative pre-sequence of 71 amino acids.     

虾夷扇贝β-actin基因的克隆和序列分析

为进一步研究虾夷扇贝功能基因的表达调控。利用SMART cDNA文库构建试剂盒成功构建了健康虾夷扇贝外套膜和肾脏两种组织的cDNA文库。对随机选取的4009个克隆进行5′端测序,比对,筛选出1条β肌动蛋白同源序列,对此EST序列两端进行扩增、测序,得到肌动蛋白基因cDNA全长序列。肌动蛋白基因cDNA全长1536bp(不包括polyA),5′端非编码区84bp,3′端非翻译区321bp,阅读框1131bp,编码377个氨基酸。在基因组DNA中,该基因被一个内含子分为两段,内含子位于第41和第42个氨基酸之间,长度为1498bp。系统发育分析显示该肌动蛋白属于β类型。本研究得到的虾夷扇贝β-肌动蛋白基因可以被用于作为定量某种虾夷扇贝mRNA的标准,这为继续研究虾夷扇贝其它功能基因,及其分子生物的进一步研究、促进其他相关分子发育和系统进化研究奠定了基础。     

Cloning, sequencing, and characterization of CYP1A1 cDNA from leaping mullet (Liza Saliens) liver and implications for the potential functions of its conserved amino acids

A 2,037 bp CYP1A1 cDNA (GenBank AF072899) was cloned through screening of a lambdaZipLox cDNA library constructed from the liver of a leaping mullet (Liza saliens) fish captured from Izmir Bay on the Aegean coast of Turkey using rainbow trout CYP1A1 cDNA as a probe. This clone has a 130 bp 5'-flanking region, a 1,563 bp open reading frame (ORF) encoding a 521-amino acid protein (58,972 Da), and a 344 bp 3'-untranslated region without a poly (A) tail. Alignment of the deduced amino acids of CYP1A1 cDNAs showed 58% and 69-96% identities with human and 12 other fish species, respectively. Southern blot analysis suggested that this CYP1A1 cDNA was from a single-copy gene. Based on the comparison with CYP1A1 genes reported for fish and mammals, the leaping mullet CYP1A1 gene is probably split into 7 exons. The intron insertion sites were predicted. Alignment of the CYP1A1 cDNA encoded amino acids from 13 fish and 7 mammalian species disclosed differences in highly conserved amino acids between aquatic and land vertebrates. The possible associated secondary structure; conserved motifs and substrate-binding sites were discussed. The phylogenetic relationships of CYP1A1s among 13 fish species were analyzed by a distance method.     

大熊猫Sjogren综合症/硬皮病自身抗原1基因(SSSCA1)的克隆及比较

硬皮病或称系统性硬化症(systemic sclerosis,SSc),又名sjogren's综合症,是一种以局限性或弥漫性皮肤及内脏器官结缔组织纤维化或硬化,最后发展至萎缩为特点的疾病.根据受累范围、程度、病程分为局限性SSc和弥漫性SSc两类,累及的内脏器官为肺脏、食管,患者常死于肺部感染、肾衰竭、心力衰竭等.     

球毛壳菌60S核糖体蛋白L10a基因克隆与特性分析

用粗糙脉孢菌（Neurospora crassa）XP_322380和赤霉菌（Gibberella zeag）PH-1（EAA76971）的60S核糖体蛋白L10a基因（60S ribosomal protein L10a,RPL10a）蛋白序列对球毛壳菌（Chaetomium globosum）ESTs序列数据库进行tBlastn检索,获得了球毛壳菌RPL10a cDNA序列。cDNA序列长765bp,开放阅读框654bp,编码217个氨基酸组成的多肽,蛋白分了量为23．9kD。BlastP分析表明该基因氨基酸序列与粗糙脉胞菌相似最高为89％;与玉蜀黍黑粉菌（Ustilago maydis）相似性最低为78％。cDNA序列及推测的氨基酸序列在GenBank登录（登录号分别为AY669070,AAT74578）。