球毛壳菌60S核糖体蛋白L10a基因克隆与特性分析*

用粗糙脉孢菌(Neurospora crassa)XP_322380和赤霉菌(G ibberella zeae)PH-1(EAA76971)的60S核糖体蛋白L10 a基因(60S ribosom al prote in L10 a,RPL10 a)蛋白序列对球毛壳菌(Chaetom ium globosum)ESTs序列数据库进行tB lastn检索,获得了球毛壳菌RPL10 a cDNA序列。cDNA序列长765 bp,开放阅读框654 bp,编码217个氨基     

球毛壳菌组蛋白H3基因克隆与特性分析

构建了球毛壳菌菌丝的cDNA文库,并获得了1410条ESTs序列,用里氏木霉(Hypocrea jecorina,AAM76068)和粗糙脉胞菌(Neurospora crassa,CAA25761)的组蛋白H3基因(Histone H3)蛋白序列对球毛壳菌(Chaetomium globosum)ESTs序列本地数据库进行tBlastn检索,获得了球毛壳菌组蛋白H3cDNA序列。cDNA序列全长739bp,开放阅读框411bp,编码136个氨基酸组成的多肽,蛋白分子量为15.4kD。BlastP同源性分析表明该基因与里氏木霉同源性最高为100%;与地钱(Marchantia polymorpha)同源性最低为95%。三级结构预测表明,该蛋白C端为球状结构域,而N端结构对其发挥调控作用起重要作用。该基因的cDNA序列及推测的氨基酸序列在GenBank登录(登录号分别为AY669068,AAT74576)。     

球毛壳菌（Chaetomium globosum）过氧化物膜蛋白过敏原基因克隆、序列分析及原核表达

以球毛壳菌cDNA文库中获得过氧化物膜蛋白（pero）基因片段（GenBank Accn:BP099709）为基础,用RACE 技术获得该基因的全长cDNA序列。序列长747bp,由412bp的3′RACE产物和508bp的5′RACE产物拼接而成。开放阅读框501bp,编码166个氨基酸,蛋白分子量为17.5kD,理论等电点为5.75。利用cDNA两侧非编码区序列作引物克隆出该基因的DNA序列,序列分析表明该基因由2个内含子和3个外显子组成。ClustalX多序列比对表明：该基因与粗糙脉孢菌（Neurospora crassa）的过氧化物膜蛋白过敏原同源性最高（83%）。将pero基因编码区克隆到原核表达载体pET28a中,构建成表达质粒pET28a-pero并转化大肠杆菌BL21,IPTG诱导后SDS-PAGE检测表达情况,结果发现在21kD处有一特异性融合蛋白带,大小与预期相符,说明该基因已经在大肠杆菌中表达。克隆的cDNA序列、DNA序列及推测的氨基酸序列在GenBank登录(登录号分别为AY555771,AY584753,AAS66898)。     

球毛壳菌甘油醛-3-磷酸脱氢酶基因克隆及特性分析

用粗糙脉孢菌(Neurospora crassa,XP_327967)和菜豆炭疽病菌(Colletotrichum lindemuthianu,P35143)的甘油醛_3_磷酸脱氢酶基因(Glyceraldehyde 3_phosphatedehydrogenase,GAPDH)氨基酸序列对球毛壳菌(Chaetomium globosum)菌丝ESTs序列本地数据库进行tBlastn检索,获得了球毛壳菌GAPDH全长cDNA序列。该序列长1240bp,开放阅读框1014bp,编码337个氨基酸组成的多肽,蛋白分子量为36.1kD。用PCR方法克隆了该基因的DNA序列,序列长为1556bp,由2个内含子和3个外显子组成。BlastP同源性分析表明该基因与鹅掌柄孢壳(Podosporaanserine)同源性最高为95%;与米曲霉(Aspergillusoryzae)同源性最低为87%。GAPDH酵母转化子生物功能分析表明转化子对Na2CO3和高温有高的耐受性,证明GAPDH为抗胁迫基因。该基因的cDNA序列、DNA序列及推测的氨基酸序列在GenBank登录(登录号分别为AY522719,AY593253,AAS01412)。     

石蒜核糖体蛋白L21的基因克隆及氨基酸序列分析

根据已知核糖体蛋白L21(RPL21)基因的保守序列设计1对引物,采用PCR技术从石蒜〔Lycoris radiata(L’Hér.)Herb.〕叶片全长cDNA文库中筛选出阳性克隆。通过测序和分析,获得1条石蒜RPL21基因全长cDNA序列,命名为LrRPL21,GenBank登录号为FJ972626;序列全长709 bp,编码1条具有164个氨基酸残基的多肽。采用多种分析程序对石蒜RPL21的理化性质以及氨基酸序列的同源性进行了分析比较。结果显示:石蒜RPL21的预测分子量为18 628,理论等电点为10.36,分子式为C833H1348N254S4,总平均疏水性指数为-0.668,为亲水性蛋白;石蒜RPL21与其他8种植物RPL21的氨基酸序列同源性百分率均较高,达到85%～95%;根据系统树可推测其与油棕(Elaeis guineensis Jacq.)RPL21的进化关系最近。     

球孢白僵菌羧基转运蛋白基因BbJEN1及其上游序列的克隆与分析

在分析一株球孢白僵菌TDNA插入突变体T12的Tagging序列的基础上,根据与其具有高度同源性的一条金龟子绿僵菌EST序列（编号为AJ273226）设计简并引物,用YADE法从球孢白僵菌中扩增出该EST的同源序列及其延伸序列。序列分析表明,该片段与粗糙脉孢霉的羧基转运蛋白JEN1具有高度同源性,由此确定该序列为球孢白僵菌羧基转运蛋白JEN1基因的部分序列。然后利用YADE法延伸扩增该序列的上、下游序列,获得球孢白僵菌羧基转运蛋白JEN1的全长DNA序列,命名为GBbJEN1。利用3′RACE扩增出球孢白僵菌羧基转运蛋白JEN1的cDNA序列,命名为BbJEN1。BbJEN1全长1656bp,编码514个氨基酸的蛋白。推测蛋白分子量为55975.37Da,等电点9.32。氨基酸序列与金龟子绿僵菌、粗糙脉孢霉和酿酒酵母羧基转运蛋白JEN1的同源性分别为77%、66%和30%。序列分析表明,GBbJEN1含有2个内含子。Southern杂交表明,GBbJEN1基因在球孢白僵菌基因组中为单拷贝。利用RTPCR法对BbJEN1的表达特性进行了分析,结果发现BbJEN1基因的转录受蟑螂壳、蝉蜕等昆虫体壁的诱导,受葡萄糖的抑制。进一步利用YADE法获得了长为977bp的GBbJEN1上游序列,其中含有可能的葡萄糖抑制调控序列和压力反应元件。     

八肋游仆虫核糖体蛋白L11的基因克隆与序列分析

以单细胞真核生物八肋游仆虫Euplotes octocarinatus为实验材料,采用PCR、RT-PCR方法克隆了核糖体蛋白L11基因(EoRPL11).将该序列与GenBank中其他物种的RPL11基因序列进行同源性比对,采用DNAStar软件进行聚类分析.结果显示,成功克隆到游仆虫RPL11基因,大核中该基因全长709 bp,开放阅读框(ORF)为531 bp,编码176个氨基酸;cDNA序列与大核中ORF序列一致,表明该基因具有转录活性;所推导的氨基酸序列与嗜热四膜虫Tetrahymena thermophila的RPL11同源性最高,为66%.     

甜菜夜蛾三个60S核糖体蛋白基因的获得与序列分析

核糖体是生物细胞内的蛋白质合成场所,核糖体蛋白除了参与组装核糖体的大小亚基之外,在生物体内还行使其它功能。本研究以甜菜夜蛾Spodoptera exigua幼虫整体的cDNA为模板,扩增得到了甜菜夜蛾60S核糖体蛋白L6、L7和L10的cDNA序列SeRPL6、SeRPL7和SeRPL10。SeRPL6、SeRPL7和SeRPL10的开放读码框分别为819bp、807bp和660bp,分别编码272、268和219个氨基酸。其中SeRPL7中包含一段由27个氨基酸构成的信号肽序列,SeRPL10中有一个预测的抗生素结合位点。通过NJ进化树构建及与其它昆虫相应的核糖体蛋白比较,发现这三个基因都具有高度的保守性,SeRPL7和SeRPL10氨基酸序列与许多昆虫相应蛋白的同源性都超过了70％。     

金龟子绿僵菌羧基转运蛋白基因MaJEN1及其启动子的克隆与分析

用YADE法扩增了球孢白僵菌T—DNA插入突变体T12中与T—DNA左边界相连的基因组序列。在此基础上得到了金龟子绿僵菌的羧基转运蛋白的全长cDNA,MaJEN1。MaJEN1全长1695bp,其中含有长为1524bp的开放阅读框(0RF),编码508个氨基酸的蛋白。氨基酸序列与粗糙脉孢霉和啤酒酵母菌的羧基转运蛋白JEN1相似性分别为69％和31％。采用PCR扩增得到了MaJEN1的基因组序列GMaJEN1,序列分析发现,GMaJEN1含有两个内含子。Southern杂交发现GMaJEN1在金龟子绿僵菌基因组上为单拷贝。利用RT—PCR法对MaJEN1的表达特性进行了分析,结果表明MaJEN1在蟑螂壳诱导培养基中表达,在该培养基中的表达受葡糖糖抑制。进一步采用YADE法得到了长为1626bp的GMaJEN1上游序列,其中含有可能的葡萄糖抑制调控序列。     

眼镜王蛇泛素融合蛋白基因和核糖体蛋白L30基因的克隆及分析

从广西产眼镜王蛇（Ophiophagus hannah）毒腺中抽提总RNA,经mRNA纯化后构建眼镜王蛇毒腺cDNA文库。从所构建的cDNA文库中,随机筛选200个克隆测序,得到两个在进化上高度保守的基因：泛素融合蛋白基因（GenBank登录号为AF297036）和核糖体蛋白L30基因（GenBank登录号是AF297033）。前者cDNA的开放阅读框为387bp,后者为348bp。前者编码128个氨基酸残基组成的泛素融合蛋白前体;后者编码115个氨基酸残基组成的核糖体蛋白L30前体。由cDNA序列推导出的氨基酸序列分析表明,泛素融合蛋白前体包括N-末端的泛素结构域（76个氨基酸残基）和C-末端的核糖体蛋白L40结构域（52个氨基酸残基）。该蛋白为一高碱性蛋白,C末端含有一个“锌指”模式结构。与16个物种比较的结果表明,眼镜王蛇与脊椎动物的泛素融合蛋白氨基酸序列相似度较高,具有高度的保守性。     

The primary structure of rat ribosomal protein L8.

The amino acid sequence of the rat 60S ribosomal subunit protein L8 was deduced from the sequence of nucleotides in a recombinant cDNA. Ribosomal protein L8 has 257 amino acids and has a molecular weight of 28,007. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 4 or 5 copies of the L8 gene. The mRNA for the protein is about 950 nucleotides in length. Rat L8 is homologous to ribosomal proteins from other eukaryotes and to proteins from eubacterial, archaebacterial, and chloroplast ribosomes.     

The primary structure of rat ribosomal protein L3.

The amino acid sequence of the rat 60S ribosomal subunit protein L3 was deduced from the sequence of nucleotides in a recombinant cDNA. Ribosomal protein L3 has 403 amino acids and has a molecular weight of 46,106. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 7 to 9 copies of the L3 gene. The mRNA for the protein is about 1,400 nucleotides in length. Rat L3 is homologous to ribosomal proteins from other eukaryotes and to proteins from eubacterial, archaebacterial, and chloroplast ribosomes.     

Nuclear-encoded chloroplast ribosomal protein L12 of Nicotiana tabacum: characterization of mature protein and isolation and sequence analysis of cDNA clones encoding its cytoplasmic precursor.

Poly(A)+ mRNA isolated from Nicotiana tabacum (cv. Petite Havana) leaves was used to prepare a cDNA library in the expression vector lambda gt11. Recombinant phage containing cDNAs coding for chloroplast ribosomal protein L12 were identified and sequenced. Mature tobacco L12 protein has 44% amino acid identity with ribosomal protein L7/L12 of Escherichia coli. The longest L12 cDNA (733 nucleotides) codes for a 13,823 molecular weight polypeptide with a transit peptide of 53 amino acids and a mature protein of 133 amino acids. The transit peptide and mature protein share 43% and 79% amino acid identity, respectively, with corresponding regions of spinach chloroplast ribosomal protein L12. The predicted amino terminus of the mature protein was confirmed by partial sequence analysis of HPLC-purified tobacco chloroplast ribosomal protein L12. A single L12 mRNA of about 0.8 kb was detected by hybridization of L12 cDNA to poly(A)+ and total leaf RNA. Hybridization patterns of restriction fragments of tobacco genomic DNA probed with the L12 cDNA suggested the existence of more than one gene for ribosomal protein L12. Characterization of a second cDNA with an identical L12 coding sequence but a different 3'-noncoding sequence provided evidence that at least two L12 genes are expressed in tobacco.     

The primary structure of chicken ribosomal protein L5.

The nucleotide sequence of a cDNA for chicken ribosomal protein L5, which is considered to associate with 5S rRNA, was determined. The cDNA is 975 bp long. The deduced protein has 297 amino acids and has a molecular mass of 34,090 Da. A comparative analysis of the amino acid sequences of chicken L5 and its homologous proteins revealed an extremely conserved region which contains a cluster of basic amino acids.     

The primary structure of rat ribosomal protein L35

The amino acid sequence of the rat 60S ribosomal subunit protein L35 was deduced from the sequence of nucleotides in a recombinant cDNA and confirmed from the NH2-terminal amino acid sequence of the protein. Ribosomal protein L35 has 122 amino acids (the NH2-terminal methionine is removed after translation of the mRNA) and has a molecular weight of 14,412. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 15-17 copies of the L35 gene. The mRNA for the protein is about 570 nucleotides in length. Rat L35 is related to the archaebacterial ribosomal proteins Halobacterium marismortui L33 and Halobacterium halobium L29E; it is also related to Escherichia coli L29 and to other members of the prokaryotic ribosomal protein L29 family. The protein contains a possible internal duplication of 11 residues.     

The primary structure of rat ribosomal protein L38.

The amino acid sequence of the rat 60S ribosomal protein L38 was deduced from the sequence of nucleotides in three recombinant cDNAs. Ribosomal protein L38 has 69 amino acids (the NH2-terminal methionine is removed after translation of the mRNA) and has a molecular weight of 8,081. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 11-13 copies of the L38 gene. The mRNA for the protein is about 450 nucleotides in length.