编码脑组织Nav1.5钠通道新外显子的克隆、鉴定和分布

Nav1.5电压-门控钠通道(VGSC)被认为是心肌的特异性通道,但最近的研究发现,该通道在脑组织尤其是边缘系统中亦广泛分布.此前,在对人神经母细胞瘤细胞钠通道的基因克隆中,发现Nav1.5/SCN5A基因的第6A外显子参与编码该通道.采用人及鼠脑组织,通过RT-PCR法对Nav1.5钠通道基因进行克隆发现:Nav1.5/SCN5A基因中的第6A外显子参与编码了该通道,而心肌等其他组织却是第6外显子参与编码该通道.人Nav1.5/SCN5A基因的第6A和第6外显子都定位于3号染色体,共有92个碱基,都可以编码产生30个氨基酸,但却有7个氨基酸不同.人和鼠脑组织Nav1.5/SCN5A基因的第6A外显子仅有一个碱基不同,却产生相同的氨基酸序列.RT-PCR法证实第6A外显子在鼠脑的不同部位表达不同,第6外显子在大鼠不同组织中的表达也不同,这为深入研究不同系统中Nav1.5钠通道的功能提供了基础.     

电压-门控Na+通道α亚单位Nav1.5

Nav1.5α亚单位是电压-门控Nav1.5Na+通道发挥作用的核心亚单位,在心肌中首先被成功克隆,是心脏电生理活动最主要的Na+通道α亚单位.最新的研究发现,Nav1.5不仅可以在神经元等非心肌组织中表达,而且其表达的选择性剪接体的类型及电生理学特性与心肌Nav1.5亦不同.目前,不仅对Nav1.5发挥功能的调控机制及与心脏传导功能障碍等疾病的发病关系有了深入的了解,而且一些常见疾病,如肿瘤和癫痫等的发生也被认为可能和Nav1 .5有关. 本文结合国内外对Nav1.5的最新研究及本小组的工作,对Nav1.5的结构、选择 性剪接、基因定位、电生理学活性及与疾病的关系作一详细综述.     

大鼠脑组织Nav1.5钠通道的基因克隆及分布分析

为了阐明大鼠脑组织Nav1.5钠通道α亚单位的编码基因、分子特性及其在不同发育阶段各脑叶的分布差异,应用逆转录聚合酶链反应(RT-PCR)方法,对大鼠脑组织Nav1.5钠通道α亚单位进行了克隆(命名为rN1),并比较其在不同发育阶段各脑叶的分布情况.rN1基因编码2016个氨基酸残基,序列分析显示,其与rH1氨基酸相似性为96.53%,与hNbR1相似性为96.13%.在DI-S3～S4发现与rH1不同的一个新的外显子(第7外显子),同时发现DⅡ～Ⅲ选择性剪切了第20外显子(53个氨基酸残基)的异构体(命名为rN1-2).分布结果显示,大鼠脑组织Nav1.5钠通道α亚单位在不同发育阶段各脑叶分布有明显的差异,研究证实,Nav1.5钠通道在大鼠脑组织显著表达,存在脑叶的分布差异,而且随着脑组织的发育,其表达逐渐趋于稳定,实验证实Nav1.5钠通道基因编码了一个新的外显子而且其表达范围更加广泛.     

水稻NBS-LRR基因选择性剪接的全基因组检测及分析

选择性剪接是促进基因组复杂性和蛋白质组多样性的一种主要机制,但是对水稻NBS-LRR序列选择性剪接的全基因组分析却未见报道。通过隐马尔柯夫模型搜索,从TIGR数据库里得到了855条编码NBS-LRR基序的序列。利用这些序列在KOME、TIGR基因索引及UniProt三个数据库中进行同源搜索,获得同源的完整cDNA序列、假设一致性序列和蛋白质序列。再利用Spidey和SIM4程序把完整cDNA序列和假设一致性序列联配到相应的BAC序列上来预测选择性剪接。蛋白质序列和基因组序列之间的联配使用tBLASTn。在这875个NBS-LRR基因中,119个基因具有选择性剪接现象,其中包括71内含子保留,20个外显子跳跃,25个选择性起始,16个选择性终止,12个5′端的选择性剪接和16个3′端选择性剪接。大多数选择性剪接都为两个和多个转录本所支持。可以通过访问http://www.bioinfor.org查询这些数据。进而通过生物信息学分析剪接边界发现外显子跳跃和内含子保留的‘GT…AG’的规则不如组成型的保守。这暗示了它们是通过不同的调控机制来指导剪接变构体的形成。通过分析内含子保留对蛋白质的影响,发现选择性剪接的蛋白更倾向于改变其C端氨基酸序列。最后对选择性剪接的组织分布和蛋白质定位进行分析,结果表明选择性剪接的最大类的组织分布是根和愈伤组织。超过1/3剪接变构体的蛋白质定位是质膜和细胞质。这些选择性剪接蛋白可能在抗病信号转导中起到重要作用。     

鉴定9个新的RHD基因mRNA可变剪接体

为了研究各种RHD基因mRNA可变剪接体的基因结构, 应用逆转录聚合酶链反应(RT-PCR)检测正常人脐血样本RHD mRNA, 对RHD cDNA进行TA克隆和序列分析, 对各可变剪接体的剪接位点进行DNA序列分析, 并将RHD mRNA进行表达序列标签(ESTs)分析。结果在28个阳性克隆中, 除全长RHD cDNA外, 共检测到12种(包括9种新的)RHD可变剪接体, 发现外显子遗漏、5′和3′剪接位点变异3种剪接形式, 涉及外显子2~9, 其中6种新的剪接体同时存在RHD和RHCE基因同源杂交现象。ESTs分析还检索到内含子保留形式的剪接体。研究表明, RHD基因mRNA存在复杂的可变剪接机制, 除已报道的剪接体外, 检测到9种新的RHD可变剪接体, 并发现了可变剪接和同源杂交并存现象。     

小鼠SmX5基因mRNA的选择性剪接

通过RT-PCR技术,发现小鼠SmX5基因的另外3种选择性剪接体,分别命名为SmX5a,b和c.小鼠SmX5a cDNA具有完整的内含子1,而SmX5b cDNA含有部分内含子2。SmX5c的保留片断和SmX5b在相同位置起始,但保留部分延伸经过余下的内含子2。余下的DNA序列在所有内含子-外显子边界处都符合剪接的“GT—AG”规则。RT-PCR的表达分析显示这3种异构体都是稳定的转录产物,均通过剪接体特异性引物的PCR反应在mRNA水平上得到证实。和SmX5相比较,剪接体的出现频率都很低。RT-PCR表达分析提示,XmX5和它的3种异构体存在于小鼠的脑、肾、睾丸、胸腺、肝、脾和心脏。SmX5a主要在胸腺中表达,而SmX5b和c在所有组织都可以检测到.SmX5不同选择剪接体及其组织特异的不同剪接方式的存在,表明SmX5的表达是复杂的,并且所有4种SmX5 mRNA水平的调控对于在不同细胞类型的mRNA前体的剪接机制维持具有重要作用。     

草菇exo-β-1,3-葡聚糖酶基因可变剪接体的克隆与表达分析

可变剪接是基因表达调控的一种重要方式。本研究利用RT-PCR克隆鉴定到草菇exo-β-1,3-葡聚糖酶基因(exg2)的4种可变剪接体(exg2V1,exg2V2,exg2V3和exg2V4),其中,exg2V1第7个内含子保留;exg2V2第11个内含子保留同时剪切掉第12个外显子的后58bp;exg2V3同时保留第7个和第17个内含子;exg2V4同时保留第2、第9和第17个内含子。4种剪接体均在可变剪接位点提前出现终止密码子,导致预测编码的氨基酸序列中包含不完整的结构域。定量PCR结果显示:草菇5个发育时期中,4种可变剪接体表达量均比标准剪接体exg2低,但4种可变剪接体的表达也表现出一定的时期和组织差异性。初步推断发现的草菇exg2基因4种可变剪接体均为无义介导的mRNA降解,通过此方式达到对exg2基因标准剪接转录本的精准调控。     

一种人肝辅酶Ⅱ依赖性视黄醇脱氢酶剪接体cDNA的克隆及特征分析

在用RT-PCR法局部扩增人与小鼠肝脏635bp的NRDR DNA时,在人肝中发现了另一短序列PCR产物,克隆后测序显示其整个序列与NRDR cDNA编码区的前后序列完全一致。采用3’-Race和5’-Race方法,从人肝组织细胞中扩增得到两个全长cDNA,除1261bp的NRDR cDNA外,另一个为全长1003bp、编码区长为525bp的NRDRiso(GenBank登录号：AY071856)。数据库分析表明,NRDRiso编码区是由人NRDR8个外显子中的第1、2、3、7、8外显子选择性剪接而成。缺失的NRDR第4、5、6外显子共258bp,编码86个氨基酸。因此,与人NRDR的260个氨基酸残基相比,NRDRiso由174个氨基酸残基组成,分子量为18．6kDa,并且NRDRiso的组织表达与NRDR明显不同。     

人端粒保护蛋白hPot1的一种新选择性剪接体的克隆及鉴定

hPot1是端粒单链结合蛋白,在维持染色体末端的稳定性中发挥着重要作用。从前列腺癌细胞C4-2中提取总RNA,以反转录得到的cDNA为模板,扩增全长的hPot1 cDNA,发现hPot1基因的一种新的剪接形式。这种新的剪接形式缺失了野生型hPot1基因的第2个外显子,并且造成了读码框架的改变,使翻译提前终止,表达出一段有45个氨基酸残基的短肽。进一步检测表明,这一hPot1 mRNA新剪接体广泛存在于多种组织来源的细胞中,提示这一剪接形式可能是细胞调控hPot1功能的一种调节机制。     

NDRG2 基因六种可变剪接体的分型鉴定

目的:抑癌基因N-myc下游调节基因2(N-myc down stream regulated gene 2,NDRG 2)在抑制肿瘤的发生及进展过程中具有重要作用,本研究旨在区分并鉴定NDRG2基因mRNA的6种可变剪接体。方法:针对NDRG2基因mRNA6种剪接体外显子的差别设计6对特异性引物。分别从正常人脑组织和胶质瘤细胞U251中提取总RNA,反转录为cDNA,利用高保真酶扩增目的剪接体DNA,并根据PCR扩增产物电泳条带的有无和大小初步判断剪接体的型别,最后将PCR产物胶回收进行测序鉴定。结果:利用本实验中设计的引物可以将人脑组织和U251胶质瘤细胞中的NDRG 2基因mRNA剪接体经行分型鉴定,确定了分型引物的可行性。人脑组织和U251细胞中均含有A、B、D和E四种剪接体。结论:利用本研究设计的特异性引物进行PCR扩增,可以判断某种细胞或组织中表达的NDRG2mRNA分子剪接体的型别。有助于未来深入研究抑癌基因NDRG2在肿瘤发生发展中的抑制作用与不同剪接体的表达相关性。     

A mutation in telethonin alters Nav1.5 function

Excitable cells express a variety of ion channels that allow rapid exchange of ions with the extracellular space. Opening of Na(+) channels in excitable cells results in influx of Na(+) and cellular depolarization. The function of Na(v)1.5, an Na(+) channel expressed in the heart, brain, and gastrointestinal tract, is altered by interacting proteins. The pore-forming alpha-subunit of this channel is encoded by SCN5A. Genetic perturbations in SCN5A cause type 3 long QT syndrome and type 1 Brugada syndrome, two distinct heritable arrhythmia syndromes. Mutations in SCN5A are also associated with increased prevalence of gastrointestinal symptoms, suggesting that the Na(+) channel plays a role in normal gastrointestinal physiology and that alterations in its function may cause disease. We collected blood from patients with intestinal pseudo-obstruction (a disease associated with abnormal motility in the gut) and screened for mutations in SCN5A and ion channel-interacting proteins. A 42-year-old male patient was found to have a mutation in the gene TCAP, encoding for the small protein telethonin. Telethonin was found to be expressed in the human gastrointestinal smooth muscle, co-localized with Na(v)1.5, and co-immunoprecipitated with sodium channels. Expression of mutated telethonin, when co-expressed with SCN5A in HEK 293 cells, altered steady state activation kinetics of SCN5A, resulting in a doubling of the window current. These results suggest a new role for telethonin, namely that telethonin is a sodium channel-interacting protein. Also, mutations in telethonin can alter Na(v)1.5 kinetics and may play a role in intestinal pseudo-obstruction.     

Nav1.5 mutations linked to dilated cardiomyopathy phenotypes

Na_v1.5 dysfunctions are commonly linked to rhythms disturbances that include type 3 long QT syndrome (LQT3), Brugada syndrome (BrS), sick sinus syndrome (SSS) and conduction defects. Recently, this channel protein has been also linked to structural heart diseases such as dilated cardiomyopathy (DCM).     

Cx43 Associates with Nav1.5 in the Cardiomyocyte Perinexus

Gap junctions (GJs) are aggregates of channels that provide for direct cytoplasmic connection between cells. Importantly, this connection is thought responsible for cell-to-cell transfer of the cardiac action potential. The GJ channels of ventricular myocytes are composed of connexin43 (Cx43). Interaction of Cx43 with zonula occludens-1 (ZO-1) is localized not only at the GJ plaque, but also to the region surrounding the GJ, the perinexus. Cx43 in the perinexus is not detectable by immunofluorescence, yet localization of Cx43/ZO-1 interaction to this region indicated the presence of Cx43. Therefore, we hypothesized that Cx43 occurs in the perinexus at a lower concentration per unit membrane than in the GJ itself, making it difficult to visualize. To overcome this, the Duolink protein–protein interaction assay was used to detect Cx43. Duolink labeling of cardiomyocytes localized Cx43 to the perinexus. Quantification demonstrated that signal in the perinexus was lower than in the GJ but significantly higher than in nonjunctional regions. Additionally, Duolink of Triton X-100-extracted cultures suggested that perinexal Cx43 is nonjunctional. Importantly, the voltage gated sodium channel Na_v1.5, which is responsible for initiation of the action potential, was found to interact with perinexal Cx43 but not with ZO-1. This work provides a detailed characterization of the structure of the perinexus at the GJ edge and indicates that one of its potential functions in the heart may be in facilitating conduction of action potential.     

Comparison of Gating Properties and Use-Dependent Block of Nav1.5 and Nav1.7 Channels by Anti-Arrhythmics Mexiletine and Lidocaine

Mexiletine and lidocaine are widely used class IB anti-arrhythmic drugs that are considered to act by blocking voltage-gated open sodium currents for treatment of ventricular arrhythmias and relief of pain. To gain mechanistic insights into action of anti-arrhythmics, we characterized biophysical properties of Na_v1.5 and Na_v1.7 channels stably expressed in HEK293 cells and compared their use-dependent block in response to mexiletine and lidocaine using whole-cell patch clamp recordings. While the voltage-dependent activation of Na_v1.5 or Na_v1.7 was not affected by mexiletine and lidocaine, the steady-state fast and slow inactivation of Na_v1.5 and Na_v1.7 were significantly shifted to hyperpolarized direction by either mexiletine or lidocaine in dose-dependent manner. Both mexiletine and lidocaine enhanced the slow component of closed-state inactivation, with mexiletine exerting stronger inhibition on either Na_v1.5 or Na_v1.7. The recovery from inactivation of Na_v1.5 or Na_v1.7 was significantly prolonged by mexiletine compared to lidocaine. Furthermore, mexiletine displayed a pronounced and prominent use-dependent inhibition of Na_v1.5 than lidocaine, but not Na_v1.7 channels. Taken together, our findings demonstrate differential responses to blockade by mexiletine and lidocaine that preferentially affect the gating of Na_v1.5, as compared to Na_v1.7; and mexiletine exhibits stronger use-dependent block of Na_v1.5. The differential gating properties of Na_v1.5 and Na_v1.7 in response to mexiletine and lidocaine may help explain the drug effectiveness and advance in new designs of safe and specific sodium channel blockers for treatment of cardiac arrhythmia or pain.     

Voltage-dependent activation of Rac1 by Nav1.5 channels promotes cell migration

Ion channels can regulate the plasma membrane potential (V_m) and cell migration as a result of altered ion flux. However, the mechanism by which V_m regulates motility remains unclear. Here, we show that the Na_v1.5 sodium channel carries persistent inward Na⁺ current which depolarizes the resting V_m at the timescale of minutes. This Na_v1.5-dependent V_m depolarization increases Rac1 colocalization with phosphatidylserine, to which it is anchored at the leading edge of migrating cells, promoting Rac1 activation. A genetically encoded FRET biosensor of Rac1 activation shows that depolarization-induced Rac1 activation results in acquisition of a motile phenotype. By identifying Na_v1.5-mediated V_m depolarization as a regulator of Rac1 activation, we link ionic and electrical signaling at the plasma membrane to small GTPase-dependent cytoskeletal reorganization and cellular migration. We uncover a novel and unexpected mechanism for Rac1 activation, which fine tunes cell migration in response to ionic and/or electric field changes in the local microenvironment.     

Inhibition of the Cardiac Na+ Channel Nav1.5 by Carbon Monoxide

Sublethal carbon monoxide (CO) exposure is frequently associated with myocardial arrhythmias, and our recent studies have demonstrated that these may be attributable to modulation of cardiac Na⁺ channels, causing an increase in the late current and an inhibition of the peak current. Using a recombinant expression system, we demonstrate that CO inhibits peak human Nav1.5 current amplitude without activation of the late Na⁺ current observed in native tissue. Inhibition was associated with a hyperpolarizing shift in the steady-state inactivation properties of the channels and was unaffected by modification of channel gating induced by anemone toxin (rATX-II). Systematic pharmacological assessment indicated that no recognized CO-sensitive intracellular signaling pathways appeared to mediate CO inhibition of Nav1.5. Inhibition was, however, markedly suppressed by inhibition of NO formation, but NO donors did not mimic or occlude channel inhibition by CO, indicating that NO alone did not account for the actions of CO. Exposure of cells to DTT immediately before CO exposure also dramatically reduced the magnitude of current inhibition. Similarly, l-cysteine and N-ethylmaleimide significantly attenuated the inhibition caused by CO. In the presence of DTT and the NO inhibitor N^ω-nitro-l-arginine methyl ester hydrochloride, the ability of CO to inhibit Nav1.5 was almost fully prevented. Our data indicate that inhibition of peak Na⁺ current (which can lead to Brugada syndrome-like arrhythmias) occurs via a mechanism distinct from induction of the late current, requires NO formation, and is dependent on channel redox state.     

Involvement of Kv1.1 and Nav1.5 in proliferation of gastric epithelial cells

In the present study, patch clamp experiments demonstrated the expression of multiple ionic currents, including a Ba2+-sensitive inward rectifier K+ current (IKir), a 4-aminopyridine- (4-AP) sensitive delayed rectifier K+ current (IKDR), and a nifedipine-sensitive, tetrodotoxin-resistant inward Na+ current (INa.TTXR) in the non-transformed rat gastric epithelial cell line RGM-1. RT-PCR revealed molecular identities of mRNAs for the functional ionic currents, including Kir1.2 for IKir, Kv1.1, Kv1.6, and Kv2.1 for IKDR, and Nav1.5 for INa.TTXR. Pharmacologic blockade of Kv and Nav, but not Kir, suppressed RGM-1 cell proliferation. To further elucidate which subtypes of the ion channels were involved in cell proliferation, RNA interference was employed to knockdown specific gene expression. Downregulation of Kv1.1 or Nav1.5 by RNA interference suppressed RGM-1 cell proliferation. To conclude, our study is the first to delineate the expression of ion channels and their functions as growth modulators in gastric epithelial cells.     

Novel isoforms of the sodium channels Nav1.8 and Nav1.5 are produced by a conserved mechanism in mouse and rat

The voltage-gated sodium channel Na(v)1.8 is only expressed in subsets of neurons in dorsal root ganglia (DRG) and trigeminal and nodose ganglia. We have isolated mouse partial length Na(v)1.8 cDNA clones spanning the exon 17 sequence, which have 17 nucleotide substitutions and 12 predicted amino acid differences from the published sequence. The absence of a mutually exclusive alternative exon 17 was confirmed by sequencing 4.1 kilobases of genomic DNA spanning exons 16-18 of Scn10a. A novel cDNA isoform was identified, designated Na(v)1.8c, which results from alternative 3'-splice site selection at a CAG/CAG motif to exclude the codon for glutamine 1031 within the interdomain cytoplasmic loop IDII/III. The ratio of Na(v)1.8c (CAG-skipped) to Na(v)1.8 (CAG-inclusive) mRNA in mouse is approximately 2:1 in adult DRG, trigeminal ganglion, and neonatal DRG. A Na(v)1.8c isoform also occurs in rat DRG, but is less common. Of the two other tetrodotoxin-resistant channels, no analogous alternative splicing of mouse Na(v)1.9 was detected, whereas rare alternative splicing of Na(v)1.5 at a CAG/CAG motif resulted in the introduction of a CAG trinucleotide. This isoform, designated Na(v)1.5c, is conserved in rat and encodes an additional glutamine residue that disrupts a putative CK2 phosphorylation site. In summary, novel isoforms of Na(v)1.8 and Na(v)1.5 are each generated by alternative splicing at CAG/CAG motifs, which result in the absence or presence of predicted glutamine residues within the interdomain cytoplasmic loop IDII/III. Mutations of sodium channels within this cytoplasmic loop have previously been demonstrated to alter electrophysiological properties and cause cardiac arrhythmias and epilepsy.