三个鲫品系DNA含量的比较研究

采用流式细胞术 (FCM)对红鲫、彭泽鲫、异育银鲫进行红血球DNA含量的检测分析比较 ,以鉴定它们的倍性。结果显示 ,红鲫红血球的DNA含量是 3 0pg ,彭泽鲫是 4 7pg ,异育银鲫是 4 8pg。显而易见 ,彭泽鲫的DNA含量是二倍体红鲫的 1 57倍 ,异育银鲫的DNA含量是红鲫的 1 6倍。采用肾细胞直接制作染色体的方法进行红鲫、彭泽鲫、异育银鲫的染色体倍性鉴定 ,结果红鲫的染色体数目是 10 0 ,为二倍体 (2n =10 0 ) ,彭泽鲫的染色体数目是 162 ,为三倍体 (3n =162 ) ,异育银鲫的染色体数目是 156— 162 ,为三倍体 (3n =156— 162 )。研究证明 :不同品系鲫的DNA含量高低与染色体的倍性有显著的正相关性     

三种鲫鱼品系同工酶比较研究

采用聚丙烯酰胺凝胶垂直板电泳技术,对彭泽鲫、银鲫D系以及野鲫三种鲫鱼品系的心、肝和肾脏组织的乳酸脱氢酶(LDH)、苹果酸脱氢酶(MDH)、苹果酸酶(ME)、酯酶(EST)和超氧化物歧化酶(SOD)同工酶表型进行了比较研究.结果表明彭泽鲫乳酸脱氢酶同工酶比银鲫D系在肝组织多出二条酶带(LDH7'和LDH8');超氧化物歧化酶在心和肾组织中分别多出一条酶带(SOD12'),表明彭泽鲫和银鲫已在生化水平产生明显的分化,推测它们可能起源于不同的地区,由不同的祖先,独立演化而形成.此外,彭泽鲫和银鲫D系的同工酶电泳图谱都包含野鲫的基本酶带,而彭泽鲫和野鲫的酯酶同工酶电泳图谱尤为相似,推测彭泽鲫和银鲫可能起源于野鲫,而彭泽鲫和野鲫的关系较近,银鲫和野鲫的关系较远.     

鲫不同种系线粒体DNA物理图谱的构建

用１３种限制性内切酶对鲫鱼三个亚种共七个品系的线粒体ＤＮＡ进行分析,其中有９种酶在种系间或种系内产生限制性片断长度多态性,发现了１６个线粒体ＤＮＡ组合单倍型,通过双酶切分析,构建了１６个线粒体ＤＮＡ组合单倍型的１３种限制性内切酶的发点的物理图谱。     

不同倍性鱼肌间骨的比较分析

采用常规测量法和解剖法对野生鲫(Carassius auratus,2n=100)、彭泽鲫(Carassius auratus variety pengze,3n=162)、改良三倍体鲫鱼(Triploid crucian carp,即湘云鲫2号,3n=150)及其亲本改良二倍体红鲫(Carassius auratus red var,改良红鲫,♀,2n=100)和改良异源四倍体鲫鲤(Allotetreploid hybrid,四倍体鲫鲤,♂,4n=200)5种不同倍性鱼肌间骨的数目、形态和分布进行研究.结果显示,野生鲫肌间骨数目在78~83之间,平均值为81根,彭泽鲫肌间骨数目在80~86之间,平均值为84,四倍体鲫鲤肌间骨数目在77~84之间,平均值为82,但是湘云鲫2号和改良红鲫的肌间骨数目比较少,湘云鲫2号在77~82之间,平均值为79,改良红鲫在58~77之间,平均值为71.考虑到不同倍性的鱼体大小和肌节数目的不同,进一步统计了每一肌节的平均肌间骨数目,野生鲫最多(0.721),彭泽鲫次之(0.673),改良红鲫最少(0.608),湘云鲫2号次之(0.633),四倍体鲫鲤位于中间(0.653),除了两组湘云鲫2号与四倍体鲫鲤、四倍体鲫鲤和彭泽鲫外,两两间都存在显著差异.5种鱼的各种肌间骨有"I"形、"卜"形、"Y"形、一端多叉形、两端两分叉形、两端多叉形和树枝形7种类型.肌间小骨越靠前端,形态越复杂.每条鱼左右两侧的肌间骨数目不完全相等,但总体上两侧肌间骨的数目接近.在保持鱼的营养、形态和活动等基本生理功能的前提下,湘云鲫2号的肌间刺数目比野生鲫和彭泽鲫都少,所以它的食用价值较高.本研究结果说明,改良二倍体红鲫和改良三倍体鲫鱼等人工培育的杂交鱼比野生鲫的肌间刺少,为鱼类骨骼发育生物学和鱼类遗传育种提供了形态学基础.     

基于SSU rDNA序列的网状车轮虫群体遗传结构及多样性研究

基于SSU rDNA序列对当前分布于我国的网状车轮虫(Trichodina reticulata Hirschman & Partsch, 1955)的群体遗传结构与多样性进行了研究。遗传结构研究结果表明: 20个样本共检测到9个单倍型, 含4个共享单倍型与5个特有单倍型, 其中鲫来源的Hap3是最大的共享单倍型; 草鱼来源的Hap8和小黄黝鱼来源的Hap9暂被视为湖北武汉和西藏地区各自特有的单倍型; 同时推测鲫来源的单倍型Hap1为祖先单倍型。结合ML系统发育树分析推测, 在多宿主的进化历程中, 鲫寄生的网状车轮虫可能是分化最早的群体, 且草鱼寄生的网状车轮虫在起源上来自于鲫。遗传多样性结果显示, 所有群体均呈现较高的单倍型多样性(H_d≥0.5)与较低的核苷酸多样性(P_i＜0.005), 且鲫来源的单倍型多样性显著高于草鱼来源, 但核苷酸多样性(P_i)明显低于后者。遗传分化(F_st)与基因流(N_m)研究结果表明, Group A(鲫来源)与Group B(草鱼来源)群体间相对独立且已经达到了极度分化程度, 群体内基因层面的交流较少。综合中性检验与核苷酸单倍型错配分析认为, Group A(鲫来源)未发生过种群扩张, Group B(草鱼来源)则存在过早期的种群扩张历史。     

四个鲫鱼品系线粒体DNA的限制性酶切分析

用差速离心和核酸酶消化法从红鲫 (C auratusredvar .)、湘鲫 [F1hybridsofredcruciancarp (♀ )×commoncarp (♂ ) ]、野鲫 (C auratusauratus)和白鲫 (C auratuscuvieri)的肝组织及白鲫的卵巢中提取和纯化线粒体DNA。用 9种内切酶 (EcoRⅠ、HindⅢ、PstⅠ、BglⅡ、BamHⅠ、XhoⅠ、XbaⅠ、SalⅠ和KpnⅠ )进行单酶酶解 ,经琼脂糖凝胶电泳分析 ,检测出PstⅠ、KpnⅠ和BglⅡ 3种酶在品系间存在限制性片段长度多态性 ,但并未检测出品系内的限制性片段长度多态性。计算出红鲫、湘鲫、白鲫和野鲫的mtDNA大小分别约为 16 19、 16 0 2、 16 6 0和 16 0 6kb。根据限制性酶切片段共享度 ,计算出 4个品系间的遗传距离 ,结果表明存在直接亲缘关系的红鲫与湘鲫之间的遗传差异最小 ,证实了红鲫与子代湘鲫之间mtDNA遵循母系遗传的特性。     

Karyotype and Resource Protection of the Wild Crucian Carps ( Carassius auratus)in the Dongting Lake Water Svstem

鲫( Carassius auratus)是洞庭湖水系一种重要的经济鱼类.为了解洞庭湖水系野鲫的细胞遗传背景,采用PHA和秋水仙素活体注射法,对沅水和澧水采集的野鲫样本逐一进行肾细胞染色体制片及组型分析.结果发现,在两条河流的野鲫群体中均检测出染色体数为100和基本染色体数为150的两种不同倍性个体,其中,两条河流染色体数为100的二倍体鲫组型公式为2N=28M+ 22SM+ 28ST +22T,NF=150;基本染色体数为150的三倍体鲫组型公式为3N =42M +33SM +42ST +33T,NF=225.在沅水和澧水不同采样点随机采集的共100尾野鲫中,检测出的三倍体比例(85％)远高于二倍体(15％),且二倍体与三倍体鲫个体在形态特征上不存在明显差异(P＞0.05).两种不同倍性鲫在同一水体的共存对于鲫的遗传进化与选育具有一定的理论和实践意义,而二倍体鲫种群的大量减少,则提示我们应该从染色体组遗传多样性角度加强对洞庭湖水系二倍体野鲫资源的保护.     

洞庭青鲫与其他六个鲫鱼品系线粒体DNA控制区的比较分析

运用PCR扩增、克隆、测序等技术,在获得洞庭青鲫和彭泽鲫线粒体DNA控制区全序列的基础上,对洞庭青鲫、彭泽鲫、普通鲫、红鲫、白鲫、A系和D系银鲫等7个鲫鱼品系线粒体DNA控制区的碱基组成、变异情况、序列结构和系统进化进行了比较分析。结果表明,7个鲫鱼品系线粒体DNA控制区碱基的平均组成为A:(32.7±0.16)%,C:(20.4±0.37)%,G:(14.1±0.08)%,T:(32.8±0.36)%,序列分歧率为0—5.7%,其中红鲫和白鲫的分歧率最大(5.7%),彭泽鲫、A系和D系银鲫之间最小(0)。洞庭青鲫与白鲫的分歧率为5.6%,与彭泽鲫、A系和D系银鲫为2.2%,与红鲫和普通鲫分别为0.8%和0.7%。对比哺乳动物线粒体DNA控制区结构,并参照其他鱼类序列,将7个鲫鱼品系的控制区分为终止序列区、中央保守区和保守序列区三个区域。同时识别了7个鲫鱼品系中一系列保守序列,并给出了它们的一般形式。序列差异和系统进化分析表明,在7个鲫鱼品系中,洞庭青鲫与普通鲫和红鲫的亲缘关系最近,与彭泽鲫、A系和D系银鲫亲缘关系次之,与白鲫的亲缘关系最远,而彭泽鲫、A系和D系银鲫三者在线粒体DNA控制区的相似性和分歧率上则表现为是同一个鲫鱼品系。       

洞庭湖水系沅水和澧水野鲫的染色体组型及资源保护

鲫(Carassius auratus)是洞庭湖水系一种重要的经济鱼类。为了解洞庭湖水系野鲫的细胞遗传背景,采用PHA和秋水仙素活体注射法,对沅水和澧水采集的野鲫样本逐一进行肾细胞染色体制片及组型分析。结果发现,在两条河流的野鲫群体中均检测出染色体数为100和基本染色体数为150的两种不同倍性个体,其中,两条河流染色体数为100的二倍体鲫组型公式为2N=28M+22SM+28ST+22T,NF=150;基本染色体数为150的三倍体鲫组型公式为3N=42M+33SM+42ST+33T,NF=225。在沅水和澧水不同采样点随机采集的共100尾野鲫中,检测出的三倍体比例(85%)远高于二倍体(15%),且二倍体与三倍体鲫个体在形态特征上不存在明显差异(P0.05)。两种不同倍性鲫在同一水体的共存对于鲫的遗传进化与选育具有一定的理论和实践意义,而二倍体鲫种群的大量减少,则提示我们应该从染色体组遗传多样性角度加强对洞庭湖水系二倍体野鲫资源的保护。     

基于amy基因的中国野桑蚕遗传多样性及其与家蚕的系统发育关系

为探索中国野桑蚕Bombyx mandarina的遗传多样性及其与家蚕B. mori的系统发育关系, 采用PCR产物直接测序法（少数样本克隆测序）获得34个家蚕和野桑蚕样本淀粉酶基因amy序列片段（715 bp）。分析发现56个多态性位点, 鉴定出28种单倍型（haplotype）; 核苷酸多样性π=0.01390±0.00103, 单倍型多样度Hd=0.988±0.011。核苷酸不配对分析（mismatch analysis）和Fu’s Fs 检测表明中国野桑蚕曾发生过种群扩张。分子方差分析（AMOVA）表明, 遗野桑蚕传差异主要在种群内, 种群间和地理组群间差异不显著。聚类树上34个样本聚为3枝/3蔟, 野蚕和家蚕都不按地理区域或系统（类型）聚类, A枝由来自不同地区的野蚕和不同类型的家蚕混合构成, 并且进一步分成3个亚枝, 每一亚枝也同时包含家蚕和野蚕, B枝由3个家蚕和1个野蚕混合构成, C枝全部由来自不同地区的野蚕构成。网络分析没有发现“祖先单倍型”和优势单倍型。结果提示, 淀粉酶基因是一个多态性丰富的分子标记, 中国野桑蚕遗传多样性十分丰富, 据此推测家蚕起源于多种生态类型混杂的野桑蚕。     

PCR survey of hox genes in the goldfish Carassius auratus auratus

A tetraploidization event took place in the cyprinid lineage leading to goldfishes about 15 million years ago. A PCR survey for Hox genes in the goldfish Carassius auratus auratus (Actinopterygii: Cyprinidae) was performed to assess the consequences of this genome duplication. Not surprisingly, the genomic organization of the Hox gene clusters of goldfish is similar to that of the closely related zebrafish (Danio rerio). However, the goldfish exhibits a much larger number of recent pseudogenes, which are characterized by indels. These findings are consistent with the hypothesis that dosage effects cause selection pressure to rapidly silence crucial developmental regulators after a tetraploidization event.     

Characterization of microsatellites located within the genes of goldfish (Carassius auratus auratus)

The goldfish (Carassius auratus auratus; Cyprinidae) is not only an important ornamental fish species, but also a useful model for biological studies. The sequence of goldfish genes present in the public database was searched for short tandem repeats, and 11 polymorphic microsatellites were detected within eight important genes. Two microsatellites were located in coding regions of the c‐myc and GAP‐43 genes, respectively, whereas the others were mainly located in 5′ and 3′ untranscribed regions of other genes, such as gonadotropin and activin. The average allele number of these microsatellites was 5.5 per locus with a range between 3 and 9. These microsatellites will be useful for ecological and population genetic studies of this species, as well as for the ornamental fish industry.     

金鱼ABC转运蛋白基因家族成员鉴定及分析

腺苷三磷酸结合盒转运蛋白(ATP-binding cassette transporter,ABC transporter)基因家族在原核生物和真核生物中广泛存在,该家族蛋白能够利用ATP裂解产生的能量将多种底物转运到膜上,参与多种生物过程,如营养摄入、细胞解毒、脂质稳态、信号转导、病毒防御以及抗原呈递等。目前,鱼类中,只在斑马鱼、斑点叉尾鮰和鲤鱼等少数鱼类中对该基因家族进行了系统的研究,关于金鱼ABC转运蛋白基因家族的详细分析,未见报道。本研究中,我们利用三代结合二代测序技术构建的金鱼转录组参考基因集数据,鉴定出55个ABC转运蛋白基因,通过系统进化分析将它们分为8个亚家族(A^H)。即金鱼ABC转运蛋白基因是由10个ABCA、14个ABCB、13个ABCC、5个ABCD、1个ABCE、4个ABCF、7个ABCG和1个ABCH组成。同时,我们将金鱼与斑马鱼、斑点叉尾鮰和鲤鱼等物种ABC转运蛋白基因家族成员的数目进行比较分析,推测硬骨鱼类特异的第3次全基因复制(3R-WGD)和谱系特异的第4次全基因组复制(4R-WGD)对金鱼该基因家族成员数目的影响。本研究结果为金鱼ABC转运蛋白基因功能的研究提供了理论依据。     

负压状态下压力变化导致鲫鱼身体组织的损伤

通过试验研究负压状态下压力变化过程对鲫（Carassius auratus auratus)的损伤,试验采用真空泵和空气压缩机在试验容器内形成不同的压力变化过程,统计不同体长的鲫经历压力变化过程后的损伤情况,并对部分受损伤的鲫进行解剖和组织观察。研究发现负压状态下压力时变导数较大的变化过程会对鲫的生存构成直接威胁,主要损伤是鱼鳔部分或全部受损,在肝胰脏、肾脏等处有明显出血点。综合分析不同试验条件对鲫损伤的情况,得到了对鲫尽可能安全的压力时变导数极限值,从而为新型环保水力设施的设计提供参考依据,起到保护渔业资源的作用。     

A BAC library for the goldfish Carassius auratus auratus (Cyprinidae, Cypriniformes)

A goldfish (Carassius auratus auratus) bacterial artificial chromosome genomic library (BAC library) was constructed from one aquarium-bred male specimen (tetraploid, 4n=100, genome size=3.52 pg/cell). The library consists of 128,352 positive clones with an average insert size of 150.4 kb, covering the genome 11-fold. All clones were spotted onto nylon filters and thus are available for screening of genomic regions of interest, such as candidate genes, gene families, or large-sized syntenic DNA regions of cyprinid species. Preliminary screens with two genes were conducted with hybridizing probes to the genes RAG1 and lgi1. RAG1 is a single-copy gene in zebrafish and is duplicated in C. a. auratus. We found a very close correlation between the number of positive BAC clones and the expected library coverage. Two copies of lgi1 were found in zebrafish. We have detected four different copies in C. a. auratus, not in the expected abundance, which indicates some variation in the coverage of the BAC library. The preliminary screens indicate that many duplicated genes that resulted from the ancient fish-specific genome duplication persist in the tetraploid goldfish genome. Hence, the BAC library will provide a useful resource for the future work on comparative genomics, polyploidy, diploidization, and evolutionary genomics in fishes.     

Condition cycles in juvenile Pagrus auratus

Nutritional condition was measured in juvenile snapper Pagrus auratus (<200 mm fork length) using three indices: relative condition index (I_c), hepatosomatic index (I_H) and digesto-somatic index (I_D). In a laboratory starvation experiment, all three indices declined substantially over a 24-day period, but I_H was most sensitive. In wild snapper I_c and I_H showed no diel cycles. I_D for 0+ snapper showed a strong diel cycle consistent with continuous feeding during daylight hours and lack of feeding during the night. I_D for 1+ snapper showed no diel cycle. Subsequent analyses were restricted to daytime samples for I_H and morning samples for I_D to minimize the confounding effect of time of day. I_c, I_H and I_D were monitored at one site at approximately bi-monthly intervals over a period of 3.25 years. All three indices varied significantly, but only I_D and I_H displayed seasonal cycles. I_D peaked in late summer-autumn and dropped to a minimum in winter, due to seasonal fluctuations in the feeding rate that probably reflected variations in metabolic and growth rates. I_H peaked in autumn-winter and declined to a minimum in summer, thus lagging 4–6 months behind I_D. I_H varied significantly among four sampling sites for all five combinations of sampling periods and year classes, whereas I_c varied significantly among sites for only one of the five combinations. The Kawau Bay site, which supported the highest density of snapper, had the highest I_H for all except one of the combinations. This suggests that juvenile snapper aggregate selectively at sites that provide optimal feeding conditions. However, no relationship was found between I_H and growth rate, indicating that better nutritional condition may not translate into faster growth.     

不同品种金鱼和鲫鱼的分子系统发育关系研究

为探讨不同品种金鱼的系统进化关系,利用PCR技术扩增了金鱼的7个代表品种红龙睛(Red dragongoldfish)、红帽子(Red cap goldfish)、虎头(Tiger head goldfish)、琉金(Gold plating goldfish)、墨龙睛(Black dragongoldfish)、水泡眼(Water vesicle goldfish)、珍珠(Genuine pearl goldfish)的线粒体DNA上细胞色素b的部分核苷酸序列,长度为597 bp.结合GenBank中红鲫、野鲫、日本白鲫、银鲫、鲤鱼的序列进行比较分析,结果显示,这7个金鱼品种之间的同源性都很高,在99.5%～100%之间;7种金鱼和红鲫的同源性也很高,为99.5%～99.8%,与野鲫的同源性在96.8%～97.2%,与日本白鲫、银鲫的同源性为93.1%～94.3%,与鲤鱼的同源性相对较低,为88.3%～88.6%.利用DNAstar软件构建了不同品种金鱼和鲫鱼的分子系统树,从分子水平进一步证实了金鱼起源于野鲫.