新城疫分离毒HN蛋白的抗原性初步分析及分子特性研究

运用针对NDV囊膜糖蛋白(HN)的单克隆抗体(MAbs),对2005～2006年间自我国江苏和广西部分地区的20株NDV分离株进行排谱试验,初步分析了不同毒株之间HN蛋白的抗原表位差异;并应用RT-PCR技术成功扩增了其HN基因整个编码区,经克隆、测序最终获得13株鸡源NDV与7株鹅源NDV HN基因的编码区序列,分析测定核苷酸序列及推导的氨基酸序列,并将鹅源NDV与鸡源NDV相应序列进行了比较.结果单抗排谱试验表明,20株NDV分离株之间HN蛋白的抗原表位存在差异;测序结果表明,测定的HN基因的编码区长度皆为1716nt编码571个氨基酸;分离株中18株基因Ⅶ型NDV分离株之间HN基因编码区核苷酸序列具有较高的同源性,达94.8%～100%;与近几年国内流行的其它基因Ⅶ型NDV之间的核苷酸序列同源性为92.1%～99.6%.对其推导的HN蛋白一级结构中潜在的糖基化位点及HN蛋白细胞受体结合相关区域的氨基酸序列等进行了比较分析.结果显示,单抗排谱差异显著株在部分氨基酸位点发生了突变;同时揭示我国部分地区同期流行的鹅源NDV与鸡源NDV HN基因之间具有较近的亲缘关系.     

新城疫分离毒HN蛋白的抗原性初步分析及分子特性研究

运用针对NDV囊膜糖蛋白(HN)的单克隆抗体(MAbs), 对2005~2006年间自我国江苏和广西部分地区的20株NDV分离株进行排谱试验, 初步分析了不同毒株之间HN蛋白的抗原表位差异; 并应用RT-PCR技术成功扩增了其HN基因整个编码区, 经克隆、测序最终获得13株鸡源NDV与7株鹅源NDV HN基因的编码区序列, 分析测定核苷酸序列及推导的氨基酸序列, 并将 鹅源NDV与鸡源NDV相应序列进行了比较。结果单抗排谱试验表明, 20株NDV分离株之间 HN蛋白的抗原表位存在差异; 测序结果表明, 测定的HN基因的编码区长度皆为1716nt编码571个氨基酸; 分离株中18株基因Ⅶ型NDV分离株之间HN基因编码区核苷酸序列具有较高的同 源性,达94.8%~100%; 与近几年国内流行的其它基因Ⅶ型NDV之间的核苷酸序列同源性 为92.1%~99.6%。对其推导的HN蛋白一级结构中潜在的糖基化位点及HN蛋白细胞受体结合相关区域的氨基酸序列等进行了比较分析。结果显示, 单抗排谱差异显著株在部分氨基酸位点发生了突变; 同时揭示我国部分地区同期流行的鹅源NDV与鸡源NDV HN基因之间具有较近的亲缘关系。     

新城疫不同毒株交叉鸡胚中和指数及其与F和HN基因变异的相关性

选取13株国内2001～2004年分离的新城疫流行病毒(Newcastle disease virus,NDV),经蚀斑纯化,克隆其融合蛋白(F)和血凝素.神经氨酸酶(HN)基因,结合疫苗株La Sota、Clone30和国内标准强毒株F48E9等的基因序列,进行遗传变异分析.利用纯化的病毒制备特异阳性血清,进行鸡胚交叉中和试验,确定不同NDV毒株之间的抗原相关性,并与NDV不同毒株之间的HN和F基因核苷酸(氨基酸)同源性进行相关比较.结果表明:病毒中和指数与HN基因的核苷酸(氨基酸)同源性显著相关(P<0.01,r=-0.35),与F基因呈弱相关(P<0.05,r=0.20),而与F基因前374bp的核甘酸同源性不相关.这表明,NDV的分子变异已经对NDV的抗原性变异产生了影响,研制新型的疫苗成为必然.     

陕西省9株乙脑病毒的分离及E基因序列分析

分析陕西省分离的9株乙脑病毒基因组序列特征。使用乙脑病毒全基因组序列测定引物进行RT-PCR扩增,扩增产物进行测序,拼接后获得基因组序列。利用MEGA 4.1、MegAlin、MEGA7.0等软件进行毒株的系统进化分析,并与P3株、减毒活疫苗SA14-14-2株及覆盖5个基因型别的其他乙脑病毒进行E基因序列比对。9株分离株3株分离自猪舍、6株分离自羊舍,其中4株获得全基因组序列,5株测得E基因序列。基于E基因序列进行毒株核苷酸、氨基酸同源性比较,结果显示分离株均与基因I型GI-b亚型毒株核苷酸和氨基酸同源性最高,核苷酸同源性范围为96.5%～99.7%、氨基酸同源性范围99.2%～100.0%;与SA14-14-2株核苷酸同源性范围为87.5%～88.9%、氨基酸同源性范围96.3%～97.2%;与P3株核苷酸同源性范围为87.6%～88.1%、氨基酸同源性范围96.7%～97.6%。分析09年（陕南地区）分离株与18年（关中地区）分离株的E基因核苷酸差异率为1.8%～2.9%、氨基酸差异率为0%～0.8%。陕西省自然界中循环的乙脑病毒以基因Ⅰ型为主,与P3株在抗原毒力关键位点无差异,...     

蓝舌病毒野毒株及疫苗株S10基因多态性分析研究

对中国蓝舌病毒1株疫苗株、31株野毒株及1株南非毒株进行测序。结果揭示33株毒株S10基因核苷酸长度均为822bp,S10基因为基因内基因,其核苷酸链的第20～22和59～61位有两个起始密码子,共有终止子在707～709位,预测编码NS3和NS3A两种蛋白;32株中国毒株间核苷酸差异0～107个,同源性86%～100%; NS3蛋白氨基酸差异0～10个,同源性956%～100%。测序毒株与GenBank中9株其它毒株比较,建立的S10基因系统发生树,将蓝舌病毒分为China group和US group两大基因群,两大群的同源性为85%;US group包括美国8株及南非1株毒株;China group包括中国32株及澳大利亚1株毒株;说明蓝舌病毒S10基因分群与毒株的地理区域来源有关。在国内首次进行了全国较大范围内蓝舌病毒分子流行病学调查,揭示了我国蓝舌病毒毒株的遗传多样性。     

三株新城疫病毒强毒株的生物学特性及全基因组序列分析

2009～2011年从北方发病鸡群和鸭群中分离出3株新城疫病毒（Newcastle disease virus,NDV）。通过致病性指数测定及交叉血凝抑制试验初步分析了3个毒株的毒力和相互之间的同源性。选取鸡源分离株SDLY01与新城疫疫苗株（LaSota）进行了交叉保护试验,选取鸭源毒株SD03对樱桃谷鸭进行攻毒实验,同时设计引物对3个毒株进行了全基因组测序,并与36株NDV参考株进行了分子进化分析。结果表明3个分离株F蛋白裂解位点的氨基酸序列均为112R-R-Q-K-R-F117符合强毒株的序列特征,并与致病性指数测定结果相符。交叉血凝抑制试验发现3个分离株与疫苗株LaSota 的抗原同源性较低为82.5%～89.4%,两个鸡源分离株间的抗原同源性为90%,而鸭源毒株SD03与鸡源毒株SDSG01同源性为100%。交叉保护试验和攻毒实验结果显示传统的LaSota疫苗能对SDLY01流行株提供100%免疫保护,但第5天仍检测到排毒;鸭源毒株SD03对樱桃谷鸭不致病,但能检出排毒,排毒期最长为5d。全基因组测序与分析表明3个毒株基因组长度均为15192bp,属于基因Ⅶd型毒株,与同期流行的鹅源及鸭源NDV毒株之间全基因组核苷酸序列具有高度的同源性,揭示鸭源、鹅源NDV与鸡源NDV在遗传学和流行病学上密切相关。     

新城疫病毒分离株的生物学特性鉴定及F蛋白基因序列分析

通过部分生物学特性鉴定、RT-PCR及F基因的序列测定与遗传进化分析,对2005~2006年从我国江苏省和广西省部分地区的发病鸡群和鹅群中分离到的20株新城疫病毒(NDV)进行了研究。各分离株经典毒力测定结果显示:MDT在45.3h~58.2h之间,ICPI在1.61~2.00之间,均为新城疫病毒强毒株特征。血凝解脱及血凝素热稳定性试验显示:各分离株的血凝解脱时间短,血凝素热稳定性较差,符合NDV强毒株的特征。F基因的序列测定表明,分离株之间的核苷酸序列具有79.7%~100%的同源性,与疫苗株LaSota的同源性为78.1%~83.4%;与国内标准强毒株F48E8同源性为80.2%~90.1%。推导其氨基酸序列分析表明,各分离株的F蛋白的裂解位点氨基酸组成为112R-R-Q-R/K-R-F117,具有NDV强毒株特征,与毒力测定结果相符。根据序列所绘制系统进化发生树,表明20株NDV分离株中有18株为基因Ⅶd型,2株为基因Ⅲ型。     

禽Ⅰ型副粘病毒f基因克隆及序列分析

用RT—PCR一步法对云南省不同禽类(鸡、鸽子)3株禽Ⅰ型副粘病毒F基因进行扩增和克隆,并对其f基因片段核苷酸序列进行分析,结果表明,云南省禽Ⅰ型副粘病毒各毒株同源性为88．1％--94．9％,与疫苗株LaSota和强毒株F48E9的同源性为85．6％。所分离两株新城疫病毒在F蛋白裂解位点区(112—117aa)的氨基酸序列与强毒株在这一区域的序列完全相同,表明为强毒株。鸽Ⅰ型副粘病毒F蛋白裂解位点区的氨基酸序列与PPMVZQ98—1株在这一区域的序列完全相同,揭示为中强毒株。以1662bp核苷酸绘制系统发育树,表明云南地方新城疫病毒届于基因Ⅶ型,鸽Ⅰ型副粘病毒届于基因Ⅵ型。     

禽Ⅰ型副粘病毒f基因克隆及序列分析

用RT-PCR一步法对云南省不同禽类(鸡、鸽子)3株禽I型副粘病毒F基因进行扩增和克隆,并对其f基因片段核苷酸序列进行分析,结果表明,云南省禽I型副粘病毒各毒株同源性为88.1%～94.9%,与疫苗株LaSota和强毒株F48E9的同源性为85.6%.所分离两株新城疫病毒在F蛋白裂解位点区(112～117aa)的氨基酸序列与强毒株在这一区域的序列完全相同,表明为强毒株.鸽I型副粘病毒F蛋白裂解位点区的氨基酸序列与PPMV ZQ98-1株在这一区域的序列完全相同,揭示为中强毒株.以1 662bp核苷酸绘制系统发育树,表明云南地方新城疫病毒属于基因Ⅶ型,鸽I型副粘病毒属于基因Ⅵ型.     

禽I型副粘病毒f基因克隆及序列分析

用RT-PCR一步法对云南省不同禽类(鸡、鸽子)3株禽I型副粘病毒F基因进行扩增和克隆,并对其f基因片段核苷酸序列进行分析,结果表明,云南省禽I型副粘病毒各毒株同源性为88.1%～94.9%,与疫苗株LaSota和强毒株F48E9的同源性为85.6%。所分离两株新城疫病毒在F蛋白裂解位点区(112～117aa)的氨基酸序列与强毒株在这一区域的序列完全相同,表明为强毒株。鸽I型副粘病毒F蛋白裂解位点区的氨基酸序列与PPMV ZQ98-1株在这一区域的序列完全相同,揭示为中强毒株。以1 662bp核苷酸绘制系统发育树,表明云南地方新城疫病毒属于基因Ⅶ型,鸽I型副粘病毒属于基因Ⅵ型。     

鹅副粘病毒WF（01）G株F基因的测序与蛋白特性分析

用鹅副粘病毒WF01G分离株进行9-10日龄SPF鸡胚尿囊腔接种,成功增殖了该病毒,采用一步法RT-PCR技术扩增WF01G病毒的F基因,获得了1条长约1.7 kb的特异性条带。对PCR扩增产物测序。结果表明,扩增片段大小为1782 bp,含有1个1662 bp的开放性阅读框,编码554个氨基酸。核苷酸同源性分析表明：WF01G株与其他7株鹅副粘病毒的同源性为84.8%-98.8%,与国内外其他NDV F基因的同源性为84.7%-93.8%,其中与国内标准强毒株F48E9的同源性为86.8%,说明WF01G与国内外的传统毒株有较大变异。与Tai-wan95株的同源性为93.8%,说明WF01G与Taiwan95株亲缘关系较近,具有较高的相似性。F蛋白裂解位点的氨基酸顺序为112Arg-Arg-G ln-Lys-Arg-Phe117,表明为副粘病毒强毒株。蛋白疏水性和抗原性分析表明与标准强毒F48E9株相比没有太大的变异。     

一株基因Ⅱ型新城疫强毒株的分子特性

从患病肉鸡群分离到一株新城疫病毒(NewcastleDiseasevirus,NDV)SQZ04。经蚀斑纯化后接种40日龄SPF鸡可诱发典型病变。经蚀斑纯化前和后的MDT为50·5h和51·2h,ICPI为2·0和1·92,IVPI为2·8和2·68,表明属强毒株。但F基因分型表明SQZ04属基因Ⅱ型,而且其与已知基因Ⅱ型的疫苗株LaSota、B1和Texas48的同源性分别为99·3%、98·7%和96·9%,显著高于与基因Ⅶ或Ⅸ型强毒株的同源性88·3%~88·6%或91·3%~92·1%。这是国内第一株属于基因Ⅱ型的NDV强毒株。SQZ04F多肽氨基酸裂解位点的序列为111GGRQGRL117,与弱毒株序列完全相同,这也是国内外首次报道具有这一氨基酸序列的强毒野毒株。然而,SQZ04株与其他已知强毒株的HN氨基酸同源性高达95·3%~97·3%,显著高于与弱毒株LaSota等的同源性87·8%~89·5%。     

鹅副粘病毒SF02 F基因的序列分析及SF02的多重RT—PCR鉴别

对新近分离的鹅副粘病毒SF0 2采用RT PCR方法 ,扩增F基因后测序 ,得到全长的F基因。该基因的ORF总长为 16 6 2nt,编码 5 5 3个氨基酸 ,其裂解位点的序列为112 R R Q K R F117,与新城疫病毒强毒株的特征相符。其核苷酸和氨基酸同源性分析 ,并与国内新城疫病毒标准强毒株F4 8E9相比较 ,表明该毒株在F基因上已发生了较大的变异 ,而与近年来在我国台湾和部分西欧国家流行的禽副粘病毒有很高的亲缘关系。在分析F基因序列的基础上 ,设计 3条引物 ,建立了一种新的多重RT PCR方法 ,能区分鸡新城疫病毒与鹅副粘病毒。     

Genotypic and pathotypic characterization of Newcastle disease viruses from India

Newcastle disease virus (NDV) is an avian paramyxovirus that causes significant economic losses to the poultry industry in most parts of the world. The susceptibility of a wide variety of avian species coupled with synanthropic bird reservoirs has contributed to the vast genomic diversity of this virus as well as diagnostic failures. Since the first panzootic in 1926, Newcastle disease (ND) became enzootic in India with recurrent outbreaks in multiple avian species. The genetic characteristics of circulating strains in India, however, are largely unknown. To understand the nature of NDV genotypes in India, we characterized two representative strains isolated 13 years apart from a chicken and a pigeon by complete genome sequence analysis and pathotyping. The viruses were characterized as velogenic by pathogenicity indices devised to distinguish these strains. The genome length was 15,186 nucleotides (nt) and consisted of six non-overlapping genes, with conserved and complementary 3' leader and 5' trailer regions, conserved gene starts, gene stops, and intergenic sequences similar to those in avian paramyxovirus 1 (APMV-1) strains. Matrix gene sequence analysis grouped the pigeon isolate with APMV-1 strains. Phylogeny based on the fusion (F), and hemagglutinin (HN) genes and complete genome sequence grouped these viruses into genotype IV. Genotype IV strains are considered to have "died out" after the first panzootic (1926-1960) of ND. But, our results suggest that there is persistence of genotype IV strains in India.     

Characterization of Newcastle Disease Viruses in Wild and Domestic Birds in Luxembourg from 2006 to 2008

Newcastle disease virus (NDV) is one of the most important viral diseases of birds. Wild birds constitute a natural reservoir of low-virulence viruses, while poultry are the main reservoir of virulent strains. Exchange of virus between these reservoirs represents a risk for both bird populations. Samples from wild and domestic birds collected between 2006 and 2010 in Luxembourg were analyzed for NDV. Three similar avirulent genotype I strains were found in ducks during consecutive years, suggesting that the virus may have survived and spread locally. However, separate introductions cannot be excluded, because no recent complete F gene sequences of genotype I from other European countries are available. Detection of vaccine-like strains in wild waterbirds suggested the spread of vaccine strains, despite the nonvaccination policy in Luxembourg. Among domestic birds, only one chicken was positive for a genotype II strain differing from the LaSota vaccine and exhibiting a so-far-unrecognized fusion protein cleavage site of predicted low virulence. Three genotype VI strains from pigeons were the only virulent strains found. The circulation of NDV in wild and free-ranging domestic birds warrants continuous surveillance because of increased concern that low-virulence wild-bird viruses could become more virulent in domestic populations.     

Genomic characterisation of two virulent Newcastle disease viruses isolated from crested ibis (Nipponia nippon) in China

This paper describes the complete genomic sequences of two virulent Newcastle disease virus (NDV) isolates, Shaanxi06 (prevalent genotype VIId) and Shaanxi10 (novel sub-genotype VIi), from sick crested ibises. The genomes of both isolates were 15,192 nt long and consisted of six genes in the order of 3′-NP-P-M-F-HN-L-5′. The genomes of the two isolates were highly similar to other reference NDV strains. However, some unique features were found in the HN protein of Shaanxi06 and the F gene end of Shaanxi10. Shaanxi06 and Shaanxi10 shared the same virulent motif ^112 −R-R-Q-K-R-F^− 117 at the F protein cleavage site, which coincided with previous pathogenicity test results. Phylogenetic analysis revealed that both isolates were clustered within class II NDV, with Shaanxi06 in genotype VII and Shaanxi10 in genotype VI. Both isolates shared high homology with the prevalent genotype NDV strains that circulate in fowls and waterfowls. This study is the first to provide genomic information about a novel sub-genotype VIi NDV strain and another genotype VIId virus, which will be useful for subsequent investigations.     

Lack of detection of host associated differences in Newcastle disease viruses of genotype VIId isolated from chickens and geese

ABSTRACT: BACKGROUND: The goose is usually considered to be resistant even to strains of Newcastle disease virus (NDV) that are markedly virulent for chickens. However, ND outbreaks have been frequently reported in goose flocks in China since the late 1990s with the concurrent emergence of genotype VIId NDV in chickens. Although the NDVs isolated from both chickens and geese in the past 15 years have been predominantly VIId viruses, published data comparing goose- and chicken-originated ND viruses are scarce and controversial. RESULTS: In this paper, we compared genotype VIId NDVs originated from geese and chickens genetically and pathologically. Ten entire genomic sequences and 329 complete coding sequences of individual genes from genotype VIId NDVs of both goose- and chicken-origin were analyzed. We then randomly selected two goose-originated and two chicken-originated VIId NDVs and compared their pathobiology in both geese and chickens in vivo and in vitro with genotype IV virus Herts/33 as a reference. The results showed that all the VIId NDVs either from geese or from chickens shared high sequence homology and characteristic amino acid substitutions and clustered together in phylogenetic trees. In addition, geese and chickens infected by goose or chicken VIId viruses manifested very similar pathological features distinct from those of birds infected with Herts/33. CONCLUSIONS: There is no genetic or phenotypic difference between genotype VIId NDVs originated from geese and chickens. Therefore, no species-preference exists for either goose or chicken viruses and more attention should be paid to the trans-species transmission of VIId NDVs between geese and chickens for the control and eradication of ND.     

四株不同宿主来源的Class I基因3型新城疫病毒全基因组序列测定及比较分析

为了解析基因型相同但宿主来源不同的新城疫病毒的全基因组差异。本文采用RT-PCR方法分别获得4株（JS/3/09/Ch,ZJ/3/10/Ch,AH/2/10/Du,JS/9/08/Go）Class I 基因3型病毒的全基因组核苷酸序列,并与GenBank中已公布的Class I基因3型病毒全基因组序列进行比对分析。本实验4株病毒的基因组长度均为15198bp,在基因组1607～1608位有6碱基的缺失,在2381～2382位有12碱基的插入,裂解位点为112EQ/RQE/GRL117是标准弱毒特征。5株Class I基因3型病毒之间全基因组同源性超过93%;而与Class II弱毒株同源性最低只有72.2%;比较6个结构蛋白基因的同源性,NP基因的同源性最高(98.3%～96.4%),而P基因最低(96.1%～91.9%)。结果表明不同宿主来源的Class I基因3型新城疫病毒在遗传信息方面差异不大,但NP/F/L基因的变异幅度较P/M/HN基因明显。     

鹅副粘病毒WF00 G分离株HN蛋白基因的测序与序列分析

用鹅副粘病毒凤阳分离株WF00G做9～10日龄SPF鸡胚的尿囊腔接种,成功增殖了该病毒,采用一步法RT-PCR技术扩增WF00G病毒的HN基因,获得了1条约1．8kb的特异性条带。PCR产物回收纯化后测序。测序结果表明,扩增片段大小为1844bp,含有1个1716bp的开放性阅渎框,编码571个氨基酸。核苷酸同源性分析表明：WF00G株与其他12株鹅副牯病毒的同源性为89．9％-99．2％,与国内外其他NDVHN基因的同源性为81．7％～95．7％,其中与国内标准强毒株F48E9的同源性为84．7％,说明WF00G与国内外的传统毒株有较大变异。与Taiwan95株和NL／96株的同源性为94．3％和95．7％,说明WF00G与Taiwan95株和NL／96株亲缘关系较近,具有较高的相似性。