开放条件下烟管菌XX-2对孔雀石绿染料的高效降解

[目的]评价白腐真菌Bjerkandera adusta XX-2处理孔雀石绿染料废水的能力,为其在染料废水中的应用提供参考依据.[方法]采用批次实验在开放条件下研究通气、pH、温度、染料初始浓度、培养时间、碳源、氮源、金属离子、盐度等因子对该菌降解孔雀石绿的影响.同时利用植物萌发、微生物抑菌和水生动物致死实验对降解产物进行毒性测试.[结果]B.adusta XX-2菌株在开放的非灭菌条件下也能高效降解孔雀石绿.例如,在初始浓度为120 mg/L且以孔雀石绿为唯一营养源的条件下降解率也能达到60％.静置培养和摇动培养呈现出几乎相同的降解率,这可以为技术应用节约动力成本.最适降解pH与温度分别为7.0和25℃.在上述参数体系的优化基础上,分别进行了碳源、氮源与金属离子的添加优化实验,结果显示低浓度的碳源(如柠檬酸钠)、氮源(如氯化铵)和金属离子(如Zn2+)均可大大提高B.adusta XX-2对孔雀石绿的脱色效率.同时B.adusta XX-2的降解也能在很高的盐浓度下进行.毒性测试表明降解后的染料对植物、微生物、水生生物的毒性大大减少.[结论]B.adusta XX-2菌株在处理染料废水方面具有很大的应用潜力.     

Characterization of the expression profiles of calpastatin (CAST) gene in chicken

The calpain system, a Ca²⁺-activated protease family, plays an important role in postmortem tenderization of skeletal muscle due to its involvement in the degradation of important myofibrillar and associated proteins, as well as in cytoskeletal remodeling and regulation of muscle growth. In this study, we quantified the expression of calpastatin (CAST) in two Chinese chicken breeds (mountainous black-bone chicken breed (MB) and a commercial meat type chicken breed (S01)), to discern the tissue and age-related specific expression pattern and its potential role on muscle tissue metabolism. Real-time quantitative PCR (RT-qPCR) assay was developed for accurate measurement of CAST mRNA levels in various tissues from chicken with different ages (0, 2, 4, 6, 8, 10, and 12 week). CAST mRNA was detected in collected organs. The heart and leg muscle tissues had the highest expression of CAST than other tissues from the same chicken (P < 0.01). Age-related expression pattern of CAST gene was evident in breast muscle, liver, and brain tissues (P < 0.05), but not in heart and leg muscle tissues (P > 0.05). Overall, the CAST mRNA level exhibited a “rise-decline-rise-decline” developmental change in breast muscle and liver, with the highest expression at 2 weeks and the lowest expression at 8 weeks. The S01 chicken had significantly higher expression of CAST in breast muscle and heart than the MB chicken (P < 0.05) at 10 weeks. Our results suggested the CAST expression may be related to muscle fiber development.     

中国昆虫区系的多元相似性聚类分析和地理区划

为了总结分析中国昆虫的分布规律, 为昆虫地理区划提出依据, 作者2008年创建了新的多元相似性聚类分析方法, 它与传统的聚类分析方法的主要不同是直接计算任意多个地区之间的相似性系数, 从而摈弃原来的合并环节。我们应用这种方法对中国823科17 018属93 662种昆虫的分布进行了定量分析。当种级水平相似性系数分别为0.19和0.14时, 全国64个基础地理单元聚类为20个小单元群和9个大单元群。根据聚类分析结果, 提出我国第一个由定量分析产生的9个昆虫区20个昆虫亚区的中国昆虫地理区划的初步方案。西北昆虫区、 东北昆虫区、 华北昆虫区、 青藏昆虫区稳定地组成中国北方昆虫大区, 江淮昆虫区、 华中昆虫区、 西南昆虫区、 华东昆虫区、 华南昆虫区稳定地组成中国南方昆虫大区。江淮昆虫区的设立是因为这里多平原和丘陵, 为重要农业区, 昆虫区系简单, 种类显著少于华东、 华中、 华南昆虫区, 而和华北昆虫区相当; 包括台湾在内的华东昆虫区是昆虫多样性最丰富地区之一, 显著高于邻近的华北、 江淮、 华南昆虫区。最后, 对昆虫地理定量分析中的重要环节进行讨论, 还对今后昆虫区系调查的薄弱地区提出建议。这项研究证明多元相似性聚类分析方法是简便、 快捷、 实用的, 能够在更广泛的范围应用, 这预示着生物地理学研究将会由定性研究进入到定量研究阶段。     

海南岛热带天然针叶林附生维管植物多样性和分布

作为热带林中一个重要的特征性组分, 附生维管植物对于维持热带森林的物种多样性及其生态系统功能均具有重要作用。该文首次系统地报道了热带天然针叶林中的附生维管植物多样性和分布特征。以海南岛霸王岭国家级自然保护区保存完好的热带天然针叶林(我国唯一较大面积分布的南亚松(Pinus latteri)天然林)中的附生维管植物为研究对象, 通过样带调查(共设置12个10 m × 50 m的样带, 记录每个样带内胸径(DBH) ≥ 5 cm树木上附生维管植物的物种名称、株数及附生高度), 分析附生维管植物的物种多样性和空间分布特征。结果表明: 1)热带针叶林0.6 hm ²面积内共有附生维管植物769株, 分属于7科17属27种, 附生兰科植物和萝摩科植物为优势类群; 2)附生维管植物在水平方向上呈现出聚集分布; 3)附生维管植物在垂直方向上, 在中等高度层次(10-20 m)分布最多, 在下层(0-5 m)也有较多的分布; 4)少数附生维管植物对南亚松表现出一定的选择性, 如华南马尾杉(Phlegmariurus fordii)、玫瑰毛兰(Eria rosea)、眼树莲(Dischidia chinensis)和铁草鞋(Hoya pottsii)等; 5)附生维管植物的物种丰富度及多度与宿主胸径均存在显著的正相关关系。     

基因组数据库简介

本文以北京大学生物信息中心安装的3个国际著名基因组数据库GDB、GenoList和Ensembl为基础,介绍目前常用的基因组数据库,包括这些数据数据库的内容、数据格式、使用方法,以及用于构建上述数据库的数据库管理系统。 Abstract:A brief introduction to the genome databases GDB,GenoList and Ensembl is given.These databases,mirrored and maintained at the Centre of Bioinformatics,Peking University,provide useful information for genome research.     

花生种子耐脱水力的形成与可溶性糖累积的关系

花生胚轴的耐脱水力在40－65DAP的发育后期逐渐增加,同时胚轴还原性糖／非还原性糖比值下降。缓慢干燥可同时诱导35DAP胚轴累积蔗糖与寡糖（水苏糖与棉籽糖）;外源ABA及高渗处理可诱导35DAP离体胚轴累积蔗糖,但不能累积寡糖（水苏糖）。耐脱水胚轴可溶性糖成分的模拟混合物可在水活度0．32及零上温度进入玻璃态;而不耐脱水胚轴的可溶性糖模拟混合物仅在零下温度进入玻璃态。模拟实验证明在干燥状态下可溶性糖与花生2S蛋白结合,并消除了2S蛋白的干燥结晶。     

Clustering of mutant mitochondrial DNA copies suggests stem cells are common in human bronchial epithelium

Tissue maintenance stem cells, as opposed to transition and/or terminal cells in the epithelium, are possible progenitor cells for human tumors, but little is known about their frequency in human tissues. It occurred to us that the colonies of mutants that should be created when a stem cell mutates and transmits the rare mutation to its descendent transition and terminal cells should, given a quantitative mutation assay, define the average number of cells in a maintenance turnover unit and permit calculation of stem cell number. To test this concept we used a combination of high fidelity PCR and constant denaturant capillary electrophoresis to enumerate mitochondrial point mutations and define their number and distribution among multiple small samples of approximately one million cells containing about 400 million copies of mitochondrial DNA. The bulk of the data were best explained by a model in which most stem cells, defined here as long-lived cells, give rise to colonies of approximately 8-128 cells. In addition, we found that about 1.5% of colonies contained hundreds or even thousands of homoplasmic mutant cells. These expanded turnover units suggest the bronchial epithelium may contain large clusters of cells with mutations, and possibly phenotypic alterations as well.     

应用多重PCR和基因扫描技术对五指山猪13个家系32个微卫星基因座的遗传分析

五指山猪是我国著名的珍稀畜种,体型小、性成熟早、遗传稳定、近交程度高,可用于医学、药学和生物材料等方面。作者利用多重PCR和基因扫描技术对五指山猪13个家系的32个微卫星基因座进行遗传检测。统计各家系的等位基因组成,计算各家系的平均杂合度和多态信息含量(PIC);结果,各家系32基因座的平均等位基因数为13.66个,平均PIC为0.731,平均杂合度为0.559。表明海南五指山猪具有丰富的遗传多样性。这些结果对于海南五指山猪的保种、定向选育、开发利用都具有重要的指导意义。     

Population genetic structure of the giant panda staple food bamboo (Fargesia spathacea complex) and its taxonomic implications

The taxonomy of woody bamboo presents many difficulties due to its long blooming interval and complex morphological variation. Whether the current taxonomy reflects genuine species divergence within woody bamboo is an intriguing question. The Fargesia spathacea Franch. complex comprises 15 closely related species with a sympatric distribution in China. Their classification has long been controversial because only a handful of vegetative traits are available, providing a good opportunity to explore the evolutionary relationships and genetic differentiation in woody bamboo. Here, we present a study involving 750 individuals from 39 representative populations in the F. spathacea complex using 14 simple sequence repeat markers. We found varying degrees of genetic diversity across populations of the F. spathacea complex (He = 0.07–0.81) and largely negative F-values at the population level, implying an excess of heterozygotes in the populations. Phylogenetic analyses revealed that all populations were divided into two major groups (clusters A and B), with the majority of the 15 species representing distinct genetic lineages. Based on population genetic analysis along with morphological evidence, we confirmed the identity of three species (F. decurvata J. L. Lu, F. spathacea, and F. murielae Gamble) and suggested the invalidation of four other species (F. scabrida T. P. Yi, F. robusta T. P. Yi, F. denudata T. P. Yi F. murielae (Gamble) T. P. Yi, and F. nitida (Mitford) Keng f. ex T. P. Yi). The delimitation of the remaining eight species has yet to be explored. The analysis of ecological factors and spatial autocorrelation suggested that altitudinal differences might account for the distinct genetic divergence between the two major groups.