EST技术及其在哺乳动物早期胚胎研究中的应用

EST(expressed sequence tags ,EST) 是一段长约150～500 bp的基因表达的外源序列片段,是由大规模随机挑取的cDNA克隆测序得到的组织或细胞基因组的表达序列标签。一个EST代表生物某一时期的某种组织或细胞的一个表达基因。本文主要综述了EST技术的原理方法,哺乳动物早期胚胎研究的理论基础以及EST技术在早期胚胎研究方面的应用,并讨论了利用EST进行研究分析的发展趋势。     

筛选代表小鼠植入前胚胎紧密化相关基因的EST

分别收集181及241枚昆明白小鼠8细胞早期胚胎及8细胞紧密化胚胎,采用SMART PCR方法直接合成胚胎双链cDNA.进而运用抑制消减杂交技术(SSH)对8细胞早期胚胎及8细胞紧密化胚胎的基因表达进行研究,并将所获得的差异表达产物按片段大小分段分离纯化后克隆入pUCm-T载体中,经PCR鉴定后挑选阳性克隆进行测序,筛选出27个代表8细胞早期胚胎和紧密化8细胞胚胎差别表达基因的cDNA片段;经与GenBank中收录的序列进行同源性匹配分析,证实其中17个eDNA片段为新的EST,提交GenBank后被接受并给予了新序列编号.这1 7个片段均可能为与紧密化密切相关的新基因的表达片段,为今后进一步克隆新的紧密化相关基因的全长cDNA及后续新基因的结构和功能研究打下基础.通过采用不同长度大小片段分别克隆的方法,可获得较长片段的EST,避免差异表达大片段的丢失.     

EST分析技术在鸡基因组学研究中的应用

表达序列标签（EST）是由大量随机取出的cDNA库克隆经测序得到的组织或细胞基因组的一段cDNA序列,一个EST代表生物体某种组织某一时期的一个表达基因。综述了EST分析技术在鸡基因组研究中的应用。如用于鉴定、发现和预测鸡的新基因,用于基因图谱的绘制,用于筛选基因的单核苷酸多态性（SNP）位点,用于基因表达分析和基因芯片制作等。EST数据库和生物信息学的联合分析技术在推动家鸡后基因组的研究中发挥着重要的作用。     

水稻胚胎发育过程相关基因的鉴定(简报)

为了研究水稻胚胎发育的分子机制,我们运用抑制差减杂交(SSH)技术鉴定了胚胎发育早期(授粉后5-7天)和晚期(授粉后15-17天)优势表达的基因.结果发现在胚胎发育早期和晚期优势表达的表达序列标签(EST)分别为47个和15个,这些EST可分为新陈代谢、蛋白合成、蛋白修饰、细胞防御或胁迫、转运运输、转译、DNA或RNA结合等多种类别.其中有32%的EST在GenBank的生物信息数据库中没有同源序列.从两个SSH文库中随机抽取11个EST分别在5DAP和15DAP水稻分化的胚胎中进行RT-PCR验证.结果显示SSH文库所获得的EST符合建库要求.对这些EST所代表的基因作进一步研究将有助于了解其在水稻胚胎发育中的生物学功能.     

转化的大鼠胚胎成纤维细胞系差异表达基因的筛选研究

来源于转化的大鼠胚胎成纤维细胞系的两株细胞,A1－5细胞与B4细胞相比表现出非常强的抗辐射性并伴随不同寻常强的G2延迟效应;用PCR选择性抑制消减杂交方法对这两株细胞进行差减,希望找到对A1－5细胞表现出的不同寻常的表型起关键作用的某一个或某一些基因。结果得到了160个差减转化子,逐个进行序列测定,并进行Dot blot杂交,共得到35个差异表达基因片段（EST）。通过对美国国家生物技术信息中心（NCBI）的非冗余序列库（NT）、鼠EST库及人EST库的BLAST进行同源检索,发现其中21个代表了尚未登录的新基因,另外14个分别与已知基因高度同源。     

用DDRT-PCR技术克隆小鼠早期胚胎发育相关基因

mRNA差异显示 (DDRT PCR)技术在哺乳动物早期胚胎发育相关基因研究中的应用 ,因获得足够量的早期胚胎材料困难而受到限制 .通过对DDRT PCR技术各种条件参数进行优化组合 ,并对某些环节进行改良 ,以小鼠的MⅡ卵、2 细胞胚胎和 4 细胞胚胎为材料进行差异显示 ,仅以相当于5 0个卵细胞的量为起始材料 ,便得到了理想的差示结果 .从差异条带中挑取感兴趣的差异条带进行回收、阳性鉴定、亚克隆、序列分析、并在反向Northern杂交基础上设计了鉴定实验 .结果发现 ,有一个片段差异显著且是阶段性特异表达 .经GenBank检索 ,发现该片段仅有同源的EST ,其全长及功能尚不清楚 ,是一个功能未知基因 ,将该片段命名为ed1.反向Northern杂交结果表明 ,ed1在 2 细胞期胚胎中有表达 ,而在MⅡ卵及 4 细胞胚胎中均不表达 .     

兔单个植入前克隆胚胎cDNA文库的构建

人与小鼠和牛在正常胚胎植入前发育过程中基因活化的研究已经取得了长足的进展 ,但是还没有对同期克隆胚胎相关研究的报道 .利用单个家兔植入前移核重构胚胎成功地构建了MⅡ卵母细胞及发育至 4 、8 细胞期的胚胎和囊胚的特异性cDNA文库 .并用 β肌动蛋白和LAPTM4α证实这类文库是可靠的 .以 8 细胞期移核重构胚cDNA文库为例 ,随机挑取克隆进行测序分析 :其中 2 3的基因EST片段可以在GenBank或EST库中找到同源序列 ,约 1 3的EST片段属于未知的新片段 ,表明这是一类重要的新兴基因资源库 (期特异性EST库 ) .这种利用单胚胎构建cDNA文库的方法 ,解决了胚胎研究材料受限的问题 ,在时间上更加精确 ,更符合胚胎发育的规律 ,也能够更加准确地反映出一些克隆胚胎的异常表型 ,是研究早期胚胎发育基因表达以及克隆胚胎再程序化基因表达的一种有效手段 .     

小鼠植入前胚胎紧密化相关基因Crg1的克隆

从已获得的运用抑制消减杂交技术(Suppression Subtractive Hybridization,SSH)分离、克隆和筛选代表8-细胞早期胚胎和紧密化8-细胞胚胎差别表达基因的ESTs片段(GenBank登录号：BQ740263、BQ740251)入手,经比较二者的同源性发现这两个EST末端反向互补,拼接成一个cDNA片段,经分析此序列包含一个完整的阅读框,提交给GenBank,登录号为AY134859。根据此序列设计引物从小鼠8-细胞紧密化胚胎cDNA中经PCR扩增出目的片段,克隆入pUCm—T载体后测序而获得全长cDNA,为小鼠植入前胚胎紧密化相关基因Crg1,分析比较证明Crg1基因与AY134859基本吻合。Crg1基因的cDNA全长为810bp,只有一个外显子,编码由150个氨基酸组成,分子量理论值为17．67kD的蛋白质。与最新的小鼠基因组工作草图进行电子杂交,该基因被定位在小鼠的14号染色体上。RT—PCR实验证明在小鼠植入前各个时期的胚胎、小鼠胚胎干细胞中均有表达,在小鼠胚胎成纤维细胞中没有表达。半定量RT—PCR实验证明Crg1基因在紧密化胚胎中表达较8—细胞胚胎高。采用Northern—blot手段分析Crg1基因在成年小鼠的8种组织中的表达情况,结果表明该基因只在小鼠卵巢中有微弱的表达,转录本大小为1．2kh,而在成年小鼠的脑、心脏、肾、睾丸、肝脏、肺、脾等中没有表达。研究表明,Crg1基因可能与小鼠胚胎紧密化及保持细胞的全能性相关。     

小鼠和鸡的类E1酶新基因UBAL的克隆和表达分析

根据含有UBA_NADbindingdomain的EST序列,利用同源性序列查找和EST拼接的方法,克隆得到鼠、鸡的新基因UBAL(ubiquitin-activatingenzymelikeprotein),它们都具有泛素活化酶Uba1的保守结构域Ⅰ,可能的ATP结合序列GVGGVG和Cys活性位点.用半定量RT-PCR分析11种成年小鼠组织的mUBAL表达量,显示mUBAL在成年小鼠多种组织中都有表达,在肾、睾丸、脑、心脏中尤为丰富.用mUBAL的编码区为探针进行的小鼠胚胎整体原位杂交显示,mUBAL在胚胎发育早期即开始表达,并随着前内脏内胚层(AVE)的向前迁移而迁移,随后在胚胎的端脑区特异性表达.与小鼠胚胎的表达谱相类似,gUBAL在HH14、HH16和HH18期鸡胚中的表达主要集中在头部.根据mUBAL和gUBAL的序列相似性保守结构域和活性位点,可以初步断定它们可能是类泛素活化酶E1的新成员,可能通过活化类泛素蛋白参与胚胎脑部的发育和调控成体组织的功能.     

用表达性差异显示分析技术分离人胎肝组织选择性表达基因

目的：建立4月龄人胎肝组织选择性表达基因EST库,为研究胚胎肝组织特异表达基因提供有力的工具。方法：采用表达性差异显示分析（representational difference analysis,RDA) 技术建立4月龄人胎肝组织选择性表达基因EST库,并测定部分克隆核苷酸序列,以竞争PCR检测代表性基因的差异表达。结果与结论：以珠蛋白家族基因为标志,所建差减cDNA文库中α－珠蛋白家族基因的表达频率较未差减cDNA文库增高7倍,同时该文库也含有多种与肝生长密切相关的基因,表明RDA技术确是研究差异表达基因的有效手段,所建EST库富集胎肝特异表达基因。部分克隆序列分析获得2种未报道序列,其中一株含有丝／苏氨酸激酶结构域,表明可望从此库中分离具有重要未知功能的新基因。     

静电纺丝的主要参数对ＰＬＧＡ纤维支架形貌和纤维直径的影响

目的以聚乳酸-羟基乙酸共聚物(PLGA)为材料,采用静电纺丝方法制备纤维支架,考察制备参数对纤维支架结构及纤维直径的影响规律。方法以四氢呋喃(THF)和N,N-二甲基甲酰胺(DMF)的混合液为溶剂,调节PLGA溶液浓度、流量及电场强度分别制备了具有不同表面形貌的纤维支架。通过扫描电镜(SEM)观察了纺丝溶液的浓度、流量及电场强度对纤维形貌和直径的影响。同时在制备的PLGA纤维支架上接种了人的真皮成纤维细胞,并对细胞在PLGA支架上的黏附和增殖情况进行了研究,从而来评价支架材料的细胞相容性。结论结果表明,随着纺丝溶液浓度的增加,纤维直径逐渐增大,纤维直径的分布也随之增大。随着流量的增加,纤维直径略有增大。随着电场强度的增大,纤维直径没有明显的变化。但是电压和浓度的增大有助于减少珠丝的产生。体外细胞培养实验证明,制备的PLGA纤维支架能支持细胞正常的黏附和增殖活动。     

PLGA的不同组成对支架材料性能的影响研究

研究PLGA的不同组成对支架材料的力学性能、降解性能和生物学性能的影响。采用溶液浇注/颗粒沥取法制备出不同组成的PLGA多孔支架,对支架的力学性能和降解速率进行考察,同时将人真皮成纤维细胞接种于不同组成的PLGA支架材料上,培养不同时间后,检测细胞的粘附率和增殖率,以及细胞产生的总胶原含量,并通过扫描电镜观察支架上的细胞形态。结果显示,随PLA比例的增加,支架的力学强度增加,降解速率降低,但都不是线性变化。70:30比例的支架,拉伸强度最高,而70:30和80:20两种比例的支架,其降解速率没有显著性差异。PLGA不同组成的支架,均具有良好的细胞相容性,成纤维细胞粘附率和增殖率在三种比例的支架上没有显著性差异,细胞在支架表面生长良好,分泌大量的细胞外基质,细胞基本铺满整个支架。本文研究发现,PLGA的组成对支架力学性能、降解性能和生物学性能有细小但显著的影响,这将对组织构建选用PLGA支架材料提供有益的帮助。     

Development of a 3D cell culture system for investigating cell interactions with electrospun fibers

There are many variables to be considered in studying how cells interact with 3D scaffolds used in tissue engineering. In this study we investigated the influence of the fiber diameter and interfiber spaces of 3D electrospun fiber scaffolds on the behavior of human dermal fibroblasts. Fibers of two dissimilar model materials, polystyrene and poly-L-lactic acid, with a broad range of diameters were constructed in a specifically developed 3D cell culture system. When fibroblasts were introduced to freestanding fibers, and encouraged to "walk the plank," a minimum fiber diameter of 10 microm was observed for cell adhesion and migration, irrespective of fiber material chemistry. A distance between fibers of up to 200 microm was also observed to be the maximum gap that could be bridged by cell aggregates--a behavior not seen in conventional 2D culture. This approach has identified some basic micro-architectural parameters for electrospun scaffold design and some key differences in fibroblast growth in 3D. We suggest the findings will be of value for optimizing the integration of cells in these scaffolds for skin tissue engineering.     

Electrospun PLGA�Csilk fibroin�Ccollagen nanofibrous scaffolds for nerve tissue engineering

Electrospun nanofibrous scaffolds varying different materials are fabricated for tissue engineering. PLGA, silk fibroin, and collagen-derived scaffolds have been proved on good biocompatibility with neurons. However, no systematic studies have been performed to examine the PLGA-silk fibroin-collagen (PLGA-SF-COL) biocomposite fiber matrices for nerve tissue engineering. In this study, different weight ratio PLGA-SF-COL (50:25:25, 30:35:35) scaffolds were produced via electrospinning. The physical and mechanical properties were tested. The average fiber diameter ranged from 280 + 26 to 168 + 21 nm with high porosity and hydrophilicity; the tensile strength was 1.76 ± 0.32 and 1.25 ± 0.20 Mpa, respectively. The results demonstrated that electrospinning polymer blending is a simple and effective approach for fabricating novel biocomposite nanofibrous scaffolds. The properties of the scaffolds can be strongly influenced by the concentration of collagen and silk fibroin in the biocomposite. To assay the cytocompatibility, Schwann cells were seeded on the scaffolds; cell attachment, growth morphology, and proliferation were studied. SEM and MTT results confirmed that PLGA-SF-COL scaffolds particularly the one that contains 50% PLGA, 25% silk fibroin, and 25% collagen is more suitable for nerve tissue engineering compared to PLGA nanofibrous scaffolds.     

纤维蛋白和高分子混合支架的研究及其对大鼠骨髓间充质干细胞增长的影响

通过混合纤维蛋白原和凝血酶溶液与不同量(0、1、2、4 mg)的PLGA无纺丝制得力学强度提高的生物混合支架,检测各组支架对大鼠骨髓间充质干细胞(rMSC)增长的影响.用扫描电镜观察各组支架都具有多孔且孔间相通的特性.根据收缩溶胀的测量,混入PLGA的纤维蛋白支架收缩率明显小于未混合PLGA的支架.检测各组的压缩模量,混合PLGA的支架压缩模量大于未混合的支架,其差异均具有统计学意义.选择具有多向分化潜能的rMSC在混合支架上的生长,进行DNA荧光检测法测得细胞增长值,在混合PLGA无纺丝1 mg的支架上rMSC增长效果最好.实验证明纤维蛋白混合三维支架维持原纤维蛋白支架内部多孔隙三维结构,而且增大了支架的力学强度,在一定程度上提高了骨髓间充质干细胞在支架上的增长,在组织工程中是具有潜力的细胞生长三维支架.     

Nanostructured biocomposite scaffolds based on collagen coelectrospun with nanohydroxyapatite

Nanofibrous biocomposite scaffolds of type I collagen and nanohydroxyapatite (nanoHA) of varying compositions (wt %) were prepared by electrostatic cospinning. The scaffolds were characterized for structure and morphology by Fourier transform infrared spectroscopy (FT-IR), scanning electron microscopy (SEM), atomic force microscopy (AFM) and X-ray diffraction (XRD) techniques. The scaffolds have a porous nanofibrous morphology with random fibers in the range of 500-700 nm diameters, depending on the composition. FT-IR and XRD showed the presence of nanoHA in the fibers. The surface roughness and diameter of the fibers increased with the presence of nanoHA in biocomposite fiber as evident from AFM images. Tensile testing and nanoindendation were used for the mechanical characterization. The pure collagen fibrous matrix (without nanoHA) showed a tensile strength of 1.68 +/- 0.10 MPa and a modulus of 6.21 +/- 0.8 MPa with a strain to failure value of 55 +/- 10%. As the nanoHA content in the randomly oriented collagen nanofibers increased to 10%, the ultimate strength increased to 5 +/- 0.5 MPa and the modulus increased to 230 +/- 30 MPa. The increase in tensile modulus may be attributed to an increase in rigidity over the pure polymer when the hydroxyapatite is added and/or the resulting strong adhesion between the two materials. The vapor phase chemical crosslinking of collagens using glutaraldehyde further increased the mechanical properties as evident from nanoindentation results. A combination of nanofibrous collagen and nanohydroxyapatite that mimics the nanoscale features of the extra cellular matrix could be promising for application as scaffolds for hard tissue regeneration, especially in low or nonload bearing areas.     

Preparation and Characterization of Silver Nanoparticles-Loaded Calcium Alginate Beads Embedded in Gelatin Scaffolds

Silver nanoparticles (AgNPs)-loaded alginate beads embedded in gelatin scaffolds were successfully prepared. The AgNPs-loaded calcium alginate beads were prepared by electrospraying method. The effect of alginate concentration and applied voltage on shape and diameter of beads was studied. The diameter of dry AgNPs-loaded calcium alignate beads at various concentrations of AgNO₃ ranged between 154 and 171 μm. The AgNPs-loaded calcium alginate beads embedded in gelatin scaffolds were fabricated by freeze-drying method. The water swelling and weight loss behaviors of the AgNPs-loaded alginate beads embedded in gelatin scaffolds increased with an increase in the submersion time. Moreover, the genipin-cross-linked gelatin scaffolds were proven to be nontoxic to normal human dermal fibroblasts, suggesting their potential uses as wound dressings.     

血管内皮生长因子(VEGF)乳液法电纺纤维膜的体外研究

目的:研究担载血管内皮生长因子(VEGF)的乳液法电纺纤维膜的亲水性能、外观形态和机械性能,纤维膜中VEGF的包封率和体外释放动力学,为评价其能否应用于血管再生领域的研究奠定基础。方法:将VEGF水溶液通过W/O乳液法制备成缓释VEGF的生物可降解的丙交酯-乙交酯共聚物(PLGA)静电纺丝纤维膜,对该纤维膜的接触角、外观形态、机械性能进行表征,Elisa法测定该纤维膜的体外14天的释放行为,分别观察纤维膜释放0天、7天、14天后的电镜图。结果:加入VEGF后,纤维膜的接触角由140.0°减小到136.1°,亲水性增强,具有类似细胞外基质(ECMs)网状结构和良好的力学性能,纤维膜第1天的突释不超过载药量的50%,电镜图下显示纤维膜释放1周时纤维发生断裂。结论:通过乳液法制备的担载VEGF的电纺纤维膜具有良好的物理性能,能够持续缓释VEGF,可作为血管再生的组织工程支架进行深入研究。     

Functional Electrospun Poly (Lactic Acid) Scaffolds for Biomedical Applications: Experimental Conditions,Degradation and Biocompatibility Study

The electrospinning technique is a method used to produce nano and microfibers using the influence of electrostatic forces. Porous three dimensional networks of continuous and interconnected fibers as scaffolds were obtained from a poly (lactic acid) solution. The concentration of the polymeric solution, 12.5% m/w, as well as the conditions of voltage (V=11kV) and tip-metallic collector distance (H=13cm) were established to develop these scaffolds through the electrospinning process. The characteristics of the scaffolds, such as fiber diameter, sintering and the biomimetics of the characteristics of a native extra cellular matrix were verified by Scanning Electron Microscopy (SEM). The orientation induced in the material as a consequence of the electrospinning forces was studied by Differential Scanning Calorimetry (DSC) and X-Ray Diffraction (XRD).The same techniques were used to study the hydrolytic degradation of samples in a ringer solution (pH=7-7.4 at 37oC) for 12 weeks and showed evidences of superficial degradation on the microfibers. The suitability of these scaffolds for tissue engineering was studied through the primary cell culture of chondrocytes, by observing adhesion and cellular proliferation developed during 14 days of assay.     

The Preparation and Performance of a New Polyurethane Vascular Prosthesis

We investigated the performance of small-caliber polyurethane (PU) small-diameter vascular prosthesis generated using the electrospinning technique. PU was electrospun into small-diameter, small-caliber tubular scaffolds for potential application as vascular grafts. We investigated the effects of electrospinning conditions (solution concentration, mandrel rotation speed) on the microstructure and porosity of the scaffolds for the purpose of preparing scaffolds with optimum microstructures and properties. We evaluated the mechanical properties of the scaffolds by tensile tests and the cytotoxicity of the PU small-diameter, small-caliber PU synthetic vascular graft by the MTT assay. The adhesion of endothelial cells to the PU scaffold was characterized by Hoechst staining and fluorescence microscopy, and we measured endothelial cell proliferation on the PU scaffold by the CCK-8 assay. We analyzed the prosthesis microstructure and endothelial cell morphology using scanning electron microscopy. With increasing PU concentration in the electrospinning solution, the fiber diameter of the vascular graft increased and the porosity decreased. In addition, with increasing electrospinning time, the wall thickness increased and the porosity decreased. We found that regular fiber orientation can be obtained by adjusting the rotation speed of the mandrel. Cell proliferation was not inhibited as the small-caliber PU synthetic vascular grafts showed little cytotoxicity. The endothelial cells had faster adherence to the PU scaffolds than to the PTFE surface during the initial contact. After prolonged cell culture, significantly higher endothelial cell proliferation rate was observed in the PU scaffold groups than the PTFE group. We obtained small-caliber PU vascular grafts with optimal fiber arrangement, excellent mechanical properties, and optimal biocompatibility by optimizing the electrospinning conditions. This study provides in vitro biocompatibility data that is helpful for the clinical application of the PU small-diameter, small-caliber PU vascular grafts.