密码子偏性对痘苗病毒载体表达效率影响的研究

为了研究密码子偏性对痘苗病毒载体表达效率的影响,分别采用痘苗病毒及其宿主细胞的优势密码子对绿色荧光蛋白基因进行改造,利用荧光、Western blot和FCM等方法分析其在痘苗病毒载体系统的表达水平。结果显示,全部采用痘苗病毒优势密码子(富含A T)和全部采用宿主细胞优势密码子(富含G C),以及部分使用宿主细胞优势密码子的三种绿色荧光蛋白基因都能够有效表达,表达水平相近,表明痘苗病毒载体对目的基因密码子的使用具有很好宽容性。为了探讨这种宽容性的机理,分别利用在胞核内和在胞浆内转录的质粒载体对不同密码子偏性的绿色荧光蛋白基因进行表达分析。结果显示,胞核内转录目的基因的pcDNA3质粒载体能有效表达富含G C的绿色荧光蛋白基因,不能有效表达富含A T的绿色荧光蛋白基因,而胞浆内转录目的基因的pSCA质粒载体能同样有效表达上述不同密码子偏性的目的基因。这些结果表明,位于胞浆内的富含A U的转录产物能够有效表达,细胞核内生成的富含A U的转录产物可能受核膜屏障或其它核内因素影响而不能有效表达。因此,胞浆内繁殖的特性是痘苗病毒载体具有密码子宽容性的主要原因。此研究为痘苗病毒载体和常用真核表达载体的选择使用提供了重要实验依据。     

HIV-1 B亚型gag基因密码子优化及其免疫原性的研究

从河南HIV-1流行区感染者中克隆HIV-1 B亚型gag基因,通过序列比对获得其一致性共有序列,对该共有序列按照哺乳动物优势密码子的使用原则进行优化,以Western blot方法比较优化前后gag基因体外表达量.发现对gag基因进行密码子优化可显著提高其表达水平.将优化后的mod.gag基因插入重组腺病毒载体,构建了重组病毒rAdV-mod.gag.在BALB/c小鼠体内分别以108PFIJ及108PFU rAdV-mod.gag疫苗单独免疫两次均可产生较高水平的gag特异性细胞免疫反应.由此得出结论,对gag基因的密码子优化是成功的;表达优化后gag基因的重组腺病毒疫苗,可以在小鼠体内诱导较强的gag基因特异性CTL应答.     

5个HIV基因修饰可明显提高其在不同系统中的表达

目的:确定HIV-1疫苗中有效的交叉保护性细胞免疫抗原,提高各个基因在相应疫苗载体中的表达水平,为研究不同抗原在DNA载体和痘苗病毒载体中的免疫原性奠定实验基础。方法:选择HIV B′/C亚型5个以细胞免疫为主的抗原(Gag、Pol、Rev、Tat和Nef),进行基因序列优化及表达结构改造,并分别构建以质粒DNA和重组痘苗病毒为载体的两大类HIV-1疫苗。结果:优化前后5个目的基因均能够在这2种载体中有效表达;虽然采用相同的基因修饰策略,但与痘苗病毒载体相比,在DNA载体中各基因表达水平的提高均较为明显;含有抑制性序列(INS)的gag、pol基因经密码子优化后,Gag、Pol蛋白的表达均明显提高,其中Pol蛋白的提高更为明显,单独pol基因比gagpol天然结构表达水平要高,而gag基因却变化不大;对于rev、tat、nef基因而言,优化后的单独基因结构要略高于优化后的融合结构(hRTN),且二者均高于未优化的融合结构(RTN)。结论:为进一步确定HIV-1疫苗中有效的交叉保护性细胞免疫抗原、研究不同抗原在DNA载体和痘苗病毒载体中的免疫原性奠定了实验基础,为进一步研究DNA疫苗和重组痘苗病毒疫苗联合免疫提供了实验依据。     

传统DNA疫苗载体与Semliki森林病毒复制子对HIV-1 Pr55gag表达与体液免疫原性的比较性研究

为探索Semliki森林病毒(SFV)衍生的复制型DNA载体可否用于HIV疫苗的候选载体,对该载体与传统DNA疫苗载体对HIV-1Pr55gag的表达与体液免疫原性进行了系统比较研究.将野生型(wtgag)及密码子改造(syngag)的HIV-1 ⅢB gag基因分别克隆于SFV DNA载体及传统DNA疫苗载体[pCDNA3.1(+)],对其Pr55gag细胞内表达水平、Pr55gag病毒样颗粒释放、以及在BALB/c鼠的体液免疫原性进行了比较.在293T、H1299、C2C12和BHK细胞系中,SFV-wtgag可以Rev非依赖方式有效表达Pr55gag,而pC-wtgag转染的细胞不能有效表达Pr55gag,从而不能诱导小鼠产生免疫反应.虽然SFV质粒的细胞转化效率明显低于pCDNA载体,SFV-wtgag和SFV-syngag在细胞内Pr55gag的表达量与pC-syngag相似,而Pr55gag病毒样颗粒的释放明显低于pC-syngag.在肌内注射免疫的小鼠中,低剂量(0.1和1.0μg)的SFV及pCDNA gag表达质粒均未诱导出GAG特异性免疫反应.在高剂量(10,30,100μg)免疫组中,与SFV gag表达质粒相比,pC-syngag可诱导出较高水平的TH1型GAG特异性抗体.SFV-syngag较SFV-wtgag可诱导出高水平的体液免疫反应.结果提示,SFV衍生的复制子单独使用不能在小鼠诱导出优于传统DNA疫苗载体的HIV-1 GAG特异性体液免疫反应,其原因可能与病毒样颗粒的释放有关.密码子改造的gag基因的优势在SFV载体系统中得到了进一步证实.     

痘苗病毒基因组密码子使用频率分析

密码子使用的差别是普遍存在的现象,每一个密码子被某些生物偏爱,而在另一些生物中则很少使用.以往这方面的研究多集中在自养生物中,而对纯寄生的病毒本身及其与宿主细胞基因密码子使用频率关系的研究则很少.分析痘苗病毒哥本哈根株189个基因的密码子使用频率发现:总体上痘苗病毒偏爱使用以A/U为结尾的密码子;基因的异质性不强,没有影响密码子使用的主要趋势;在不同转录方向上和表达时相上,基因密码子使用略有不同;不同功能的基因其密码子使用上差别较大;晚期基因比早期基因与宿主密码子使用频率的差别大.上述结果表明:密码子是影响病毒和细胞相互作用、保证其自身生存的重要机制.     

表达HIV-1六种基因的非复制型重组痘苗病毒在CEF细胞中遗传稳定

本研究目的是了解表达HIV-1六种基因的非复制型重组痘苗病毒(rNTV-C)的遗传稳定性(包括病毒载体和六种外源基因:gp160、gag、polr、evt、at和nef)。我们将rNTV-C在原代鸡胚成纤维细胞(CEF)中连续传代至25代,对第9、12、15以及25代病毒载体基因的稳定性、六种外源基因的稳定性、外源基因表达的稳定性以及外源基因的丢失率进行研究。结果显示:各代病毒均保持了非复制型天坛株痘苗病毒载体特点且传代稳定;HIV-1目的基因序列与原设计序列相符、重组位点正确且遗传稳定,连续传25代核苷酸突变率低于万分之一;目的蛋白在各代rNTV-C中均能有效表达,而且各代病毒之间表达量和分子量无明显差别;以Gag和Nef蛋白表达为标记,rNTV-C各代病毒的基因丢失率均在5%以下。本研究结果为疫苗生产提供了确保毒种稳定的关键资料。     

HIV-1gag/IFNα-2b的构建与表达鉴定

目的：构建艾滋病病毒核心蛋白(gag)与干扰素(IFNα-2b)融合基因表达质粒,观察其在痘苗病毒中共表达结果,研究其意义。方法：利用基因重组技术,将IFNα-2b基因片段插入到gag基因的nt531位点,经脂质体转染与血凝素阴性蚀斑筛选,挑出重组痘苗病毒。经免疫荧光、Western blot和Dot-ELISA鉴定表送产物。结果：间接免疫荧光实验结果显示,转染重组质粒的细胞表面有绿色荧光。免疫印迹实验与Dot-EILSA结果均显示重组质粒转染细胞的裂解物中存在表达的gag／IFNα-2b蛋白。结论：成功地构建了重组真核细胞表达质粒,表达的蛋白具有良好的免疫原性与免疫反应性。     

嗜酸热古菌病毒STSV2密码子偏嗜性及其对dUTPase外源表达的影响

病毒和宿主之间的密码子使用频率差异是病毒在宿主中生存的重要调控机制之一。利用生物学软件Editseq和RSCU算法统计病毒STSV2及其宿主Sulfolobussolfataricus P2中的6个不同基因的遗传密码偏嗜性,并对病毒STSV2的dUTPase在大肠杆菌BL21和Rosetta中分别进行外源表达并分析其差异。结果表明,病毒STSV2密码子的偏嗜性总体与其宿主菌P2相似,STSV2基因组的不同蛋白编码基因的密码子偏嗜性有区别,病毒和宿主的相似蛋白编码序列密码子偏嗜性也有差异。分别以BL21(DE3)和Rosetta(DE3)为宿主表达STSV2的dUTPase基因显示,以BL21(DE3)为宿主时表达量大于以Rosetta(DE3)为宿主时目的蛋白表达量,进一步说明了病毒STSV2的密码子的偏嗜性对其蛋白的外源表达影响。     

马铃薯X病毒外壳蛋白的表达水平与变偶密码子使用频率的相关性

把经密码子修饰的马铃薯X病毒（Potato Virus X, PVX）外壳蛋白（Coat Protein, CP）基因和未修饰的野生型外壳蛋白基因与CaMV 35S启动子融合后,构建成相应的植物表达载体,利用农杆菌介导转化烟草。分别对修饰CP和野生CP的转基因烟草进行Western blot和ELISA分析,结果表明经密码子修饰的PVX外壳蛋白的表达量是野生型蛋白表达量的1/3～1/5。Northern blot结果表明修饰和未修饰的外壳蛋白在转录水平上是一致的。以上结果暗示外源基因中稀有密码子的数量可能是限制外源基因表达的一个因素。改变基因中稀有密码子的数量有可能成为控制基因表达的一种有效途径。     

HIV-2 Gag蛋白的表达研究

HIV-2是引起艾滋病的主要病原之一,与HIV-1相比,其致病性弱,感染的潜伏期长,有的甚至不发展成艾滋病。但HIV-2的易感宿主较HIV-1广,除人和猩猩之外,HIV-2还能感染猴等灵长类动物,这将为艾滋病疫苗和实验动物模型的研究提供有利条件。 我们应用原核高效表达载体pBV220在大肠杆菌中分别表达了HIV-2gag全部和部分蛋白(去掉与pol重叠序列)。在此基础上我们又将gag全部和部分序列置于痘苗病毒P7.5和     

Codon usage-mediated inhibition of HIV-1 gag expression in mammalian cells occurs independently of translation

Codon usage is considered one of the critical factors that limit the expression rate of heterologous genes. Impaired translation efficiency, specifically insufficient amount of corresponding tRNAs and changed startcodon context, are believed to account for the low translation initiation and elongation rates during the protein biosynthesis in unicellular organisms. Translational efficiency is probably not the primary factor influencing codon usage diversity in mammalian cells. However, the other possible mechanisms preventing expression of genes with low-usage such as mRNA stability, processing and nucleocytoplasmic transport, are not adequately explored. In our work, we addressed the question of whether codon usage differences affect exclusively translational efficiency of mammalian gene products. We demonstrated that the CMV-induced expression of gag-reporter in human H1299 cell line was influenced by the nucleotide composition of the mRNA, and the limitation of gag expression appeared to be inversely related to the level of codon optimization. However, cytoplasmic expression of the gag-reporter driven by vaccinia virus/T7 RNA polymerase hybrid system rescued its expression independently of HIV-1 gag mRNA nucleotide content. We concluded that impaired HIV-1 gag expression may be caused by translation-independent mechanisms, which probably play a major role in codon usage-mediated defects in heterologous gene expression in mammalian cells.     

HIV-1 gag expression is quantitatively dependent on the ratio of native and optimized codons

There is a significant variation of codon usage bias among different species and even among genes within the same organisms. Codon optimization, this is, gene redesigning with the use of codons preferred for the specific expression system, results in improved expression of heterologous genes in bacteria, plants, yeast, mammalian cells, and transgenic animals. The mechanisms preventing expression of genes with rare or low-usage codons at adequate levels are not completely elucidated. Human immunodeficiency virus (HIV) represents an interesting model for studying how differences in codon usage affect gene expression in heterologous systems. Construction of synthetic genes with optimized codons demonstrated that the codon-usage effects might be a major impediment to the efficient expression of HIV gag/pol and env gene products in mammalian cells. According to another hypothesis, the poor expression of HIV structural proteins even without HIV context is attributed to the so-called cis-acting inhibitory elements (INS), which are located within the protein-coding region. They consist of AU-rich sequences and may be inactivated through the introduction of multiple mutations over the large regions of gag gene. In our work, we evaluated expression of hybrid HIV-1 gag mRNAs where wild-type (A-rich) gag sequences were combined with artificial sequences. In such "humanized" gag fragments with adapted codon usage, AT-content was significantly reduced in favor of G and C nucleotides without any changes in protein sequence. We show that wild-type gag sequences negatively influence expression of gag-reporter, and the addition of fragments with optimized codons to gag mRNA partially rescues its expression. The results demonstrate that the expression of HIV-1 gag is determined by the ratio of optimized and rare codons within mRNA. Our data also indicates that some wtgag fragments counteract the influence of the other wtgag sequences, which cause the inhibition of gag expression. The presented data do not contradict the concept of INS; yet, it makes the definition of INS more complex. This supports the idea of a broader role of the selected codon usage in influencing the expression of HIV proteins in mammalian cells.     

HIV—1长末端重复序列对重组痘苗病毒表达Gag蛋白的影响

将系列缺失的ＨＩＶ１长末端重复序列（ＬＴＲ）和全长的ｇａｇＯＲＦ置于痘苗病毒载体中,经同源重组和血球吸附试验,成功地构建了６株重组痘苗病毒。免疫印迹和免疫酶试验检测均表明,６株重组病毒的Ｇａｇ蛋白表达量因ＬＴＲ不同而有明显差异,表明ＨＩＶ１的ＬＴＲ及其下游基因置于痘病毒启动子控制下,在痘苗病毒中表达时有下述特点：（１）不同的痘苗病毒启动子与全长ＬＴＲ相互作用,对ｇａｇ基因表达有显著不同的调控效果;（２）ＮＲ序列对Ｇａｇ蛋白表达没有明显影响;（３）ＥＮ序列不能被重组痘苗病毒表达系统识别;（４）ＴＡＲ序列可提高Ｇａｇ蛋白的表达量;（５）Ｕ５区及下游非翻译序列不影响Ｇａｇ蛋白的表达。     

表达HIV-1 gag重组鸡痘病毒的构建与筛选

构建并筛选表达HIV-1 gag蛋白的重组鸡痘病毒,并对其进行鉴定。首先设计引物通过PCR技术扩增HIV-1 gag基因,将其连接到pMD18-T载体上,测序正确后将其克隆入本实验室自行构建的鸡痘病毒穿梭载体pTKET中,获得重组质粒pTKET-HIV gag。然后将其与鸡痘病毒FPV282E4株共转染原代鸡胚成纤维细胞(CEF)进行同源重组,以增强型绿色荧光蛋白(EGFP)为筛选标记,通过噬斑筛选获得重组病毒,应用PCR,RT-PCR,Western blot方法对重组病毒进行鉴定和遗传稳定性分析。结果:通过10次噬斑筛选,PCR检测表明目的基因已整合到重组鸡痘病毒基因组中,RT-PCR,Western blot结果表明HIV-1 gag在感染细胞内成功表达且具有抗原性。连续传代20次,PCR,RT-PCR,Western blot均能检测到外源基因的整合、转录和表达,且未能扩增出FPV-TK基因,表明重组病毒遗传稳定性良好,而且病毒已经纯化。结论:成功获得表达HIV-1gag的重组鸡痘病毒,为进一步免疫试验研究奠定基础。     

An HLA-C-restricted CD8+ cytotoxic T-lymphocyte clone recognizes a highly conserved epitope on human immunodeficiency virus type 1 gag.

A unique epitope on the gag protein of human immunodeficiency virus type 1 (HIV-1), located at amino acid 145 to 150, has been mapped by using a CD8+ cytotoxic T-lymphocyte (CTL) clone. This epitope is highly conserved among 18 HIV-1 strains. The HIV-1 gag-specific human leukocyte antigen (HLA) class I-restricted CD8+ CTL clone was generated from fresh peripheral blood mononuclear cells of an HIV-seropositive donor by stimulation with gamma-irradiated allogeneic peripheral blood mononuclear cells in the presence of an anti-CD3 monoclonal antibody and recombinant interleukin-2. This gag-specific CTL clone killed autologous target cells infected with a recombinant vaccinia virus containing the gag gene of HIV-1 and target cells pulsed with an authentic p24gag construct expressed in Escherichia coli. Fine specificity was determined by using a panel of overlapping 30-amino-acid-long synthetic peptides and subsequently using smaller peptides to precisely map the CTL domain on p24. The epitope is on a highly conserved region, and it overlaps with a major B-cell epitope of gag. This CD8+ T-cell epitope is restricted by HLA-Cw3, which has not been previously identified as a restricting element for human CTL responses.     

Defective Vaccinia Virus as a Biologically Safe Tool for the Overproduction of Recombinant Human Secretory Proteins

We have described recently the construction of a defective vaccinia virus (VV) lacking the essential D4R open reading frame and have shown furthermore the selection of a complementing cell line providing the essential D4R gene product. The D4R gene belongs to the group of early transcribed vaccinia genes preventing a virus defective in D4R from entering into the intermediate and late phase of replication under noncomplementing conditions. Here we show that this property, which is unique among the group of so called nonreplicating poxviruses, is helpful for the production of (secretable) recombinant human proteins. Recombinant VV based on a D4R-defective parental strain expressing cDNAs coding for the human blood coagulation factors VII and XI produced significantly more recombinant protein than the corresponding recombinants based on wild-type VV. Moreover, the complementing cell line RK-D4R-44.20 was a more effective production cell system for both vD4 and wild-type VV recombinants compared to wild-type RK-13 cells. Surprisingly, recombinant human factor VII was more efficiently produced with the defective vaccinia recombinant even under noncomplementing conditions, suggesting that persistence of the early phase of vaccinia replication in combination with a delayed host shutoff is advantageous for the overproduction of certain recombinant proteins using the VV expression system.