Computational analysis and prediction for exons of PAC579 genomic sequence

To isolate the novel genes related to human hepatocellular carcinoma (HCC), we se-quenced P1-derived artificial chromosome PAC579 (D17S926 locus) mapped in the minimum LOH (loss of heterozygosity) deletion region of chromosome 17p13.3 in HCC. Four novel genes mapped in this genomic sequence area were isolated and cloned by wet-lab experiments, and the exons of these genes were located. 0-60 kb of this genomic sequence including the genes of interest was scanned with five different computational exon prediction programs as well as four splice site recognition programs. After analyzing and comparing the computationally predicted results with the wet-lab experiment results, some potential exons were predicted in the genomic sequence by using these programs.     

Computational analysis and prediction for exons of PAC579 genomic sequence

To isolate the novel genes related to human hepatocellular carcinoma (HCC), we sequenced P1-derived artificial chromosome PAC579 (D17S926 locus) mapped in the minimum LOH (loss of heterozygosity) deletion region of chromosome 17p13.3 in HCC. Four novel genes mapped in this genomic sequence area were isolated and cloned by wet-lab experiments, and the exons of these genes were located. 0–60 kb of this genomic sequence including the genes of interest was scanned with five different computational exon prediction programs as well as four splice site recognition programs. After analyzing and comparing the computationally predicted results with the wet-lab experiment results, some potential exons were predicted in the genomic sequence by using these programs.     

复制型HBV转基因小鼠的遗传与繁育研究

本文采用类似系祖建系的方法,对复制型ＨＢＶ转基因小鼠模型的１７、２１、２５三个系列进行了繁育,通过ＰＣＲ和Ｓｏｕｔｈｅｒｎ分子杂交的方法,检测三个系列小鼠尾组织和血清的ＤＮＡ样品,以确定ＨＢＶ基因的整合和复制情况。结果表明,ＨＢＶ基因已稳定地遗传至第五代（Ｆ５）,且各世代小鼠血清中都存在ＨＢＶＤＮＡ,此外,整合阳性小鼠的血清中能测出ＨＢＶＤＮＡ的比率很高,Ｆ１代为９４．４４％（１０２／１０８）,Ｆ２、Ｆ３代为９５．３１％（６１／６４）,故在繁育中可以通过测血清中的ＨＢＶＤＮＡ来确定小鼠是否整合。     

噬菌体DNA的快速抽提

介绍一种噬菌体DNA的快速抽提方法.用聚乙二醇沉淀噬菌体颗粒,然后经DEAE纤维素纯化处理和酚抽提.与传统的噬菌体DNA纯化方法相比,改进后的方法方便、快速、经济,可获得高纯度的噬菌体DNA.     

逆转录病毒运载的人乙肝病毒（adr）X基因在辅助细胞中…

本文报道以人ａｄｒ亚型ＨＢＶ ＤＮＡ（３．２ｋｂ）为模板,经多聚酶链反应（Ｐｏｌｙｍｅｒａｓｅ Ｃｈａｉｎ Ｒｅａｃｔｉｏｎ,ＰＣＲ）扩增Ｘ基因片段（９４９ｂｐ）,以逆转录病毒体ｆＰＧＶ１为运载体,在它的克隆位点上插入Ｘ基因片段,由此获得逆转录病毒重组体ｆＰＧＶ１－Ｘ,并同时以含反向Ｘ基因顺序ｆＰＧＶ１－ａｎｔｉ－Ｘ及ｆＰＧＶ１为对照,通过对ψ２及ＰＡ３１７细胞的转染和感染,获得了高于１０＾４ｐｆ     

病毒ki-ras表达质粒的构建

用重组DNA技术构建了病毒ki-ras表达质粒,用Eco R Ⅰ和Bam H Ⅰ酶解pUC-9DNA,小牛肠碱性磷酸酶脱磷酸,病毒ki-ras编码基因来源于Hi-Hi-3质粒DNA的Sat Ⅱ和Eco R Ⅰ酶切的0.6kb片段,用连接酶和DNA聚合酶Klenow片段将两个片段连接,转化大肠杆菌JM103,免疫筛选表达质粒,从156个转化克隆中得到两株表达质粒,其中一株pKras83的p21蛋白表达量为细菌总蛋白量的10％。     

PAC579基因组序列外显子计算机分析与预测

为了寻找肝癌相关基因,选择位于人原发性肝细胞肝癌染色体17p13.3杂合性缺失最小共同缺失区内含有D17S926位点的PAC579克隆进行了基因组测序,通过实验分离和克隆了位于PAC579上的4个全长新基因,并将它们在该基因组上进行了外显子定位.使用5种计算机预测外显子的方法和4种剪接位点识别的方法对PAC579前60 kb序列(含上述4个基因)进行扫描,将得到的外显子预测结果和剪切位点结果与实验结果进行了对照与评析,又对未获得基因的区域加以预测.     

人巨细胞病毒糖蛋白52kD抗原编码区段在大肠杆菌中高效表达

采用聚合酶链反应,从人巨细胞病毒重组质粒克隆pBH中扩增并分离了含糖蛋白52kD抗原编码区段;扩增产物经纯化和EcoR Ⅰ酶切后,与相同酶切的高效表达质粒pBV-220重组,构成含人巨细胞病毒糖蛋白52kD抗原编码区段的高效表达质粒pHcMV 52;用此重组表达质粒转化大肠杆菌JM101,经增殖和42℃温度诱导以及筛选。阳性克隆经12.5％SDS-PAGE表明,外源基因表达蛋白质量占菌体溶解液中蛋白质总量20％。蛋白质印迹(western blot)杂交证实该表达产物具有免疫原性。     

人类组织特异性DNA聚合酶POLλ2基因的克隆、表达纯化和鉴定

发现并克隆了一个肝脏特异的人类DNA聚合酶基因, 是POLλ的一个剪接体, 命名为POLλ2. 该剪接本的cDNA长2206 bp, 包含一个1452 bp的开放阅读框, 编码482个氨基酸, 位于人10号染色体长臂24区, 长约7.9 kb, 包含8个外显子和7个内含子. 生物信息学分析表明, POLλ2蛋白和DNA聚合酶X家族成员高度同源, 并含有这个家族特有结构域POLx, 因此是一个DNA聚合酶X家族的新成员. 该剪接本的核苷酸序列和相应蛋白质氨基酸序列已提交至GenBank, 登录号为AY302442. 亚细胞定位实验证实, POLl2蛋白定位于细胞核; 人16种组织表达谱实验表明, POLl2在肝组织和睾丸组织中特异性高表达, 在卵巢组织中低表达, 而在其他组织中没有检测到表达. 癌和癌旁表达实验表明, 与正常肝组织和癌旁组织相比, 在15个肝癌组织的样本中有80%样本的POLλ上调表达, 导致POLλ2 和POLλ的mRNA分子的比例异常, 可能和肝癌的病理过程有关. 通过筛选菌株, E.coli BL21(DE3)CONDON Plus可以高效地表达可溶性POLλ2蛋白; 通过Ni-NTA resin 和Superdex-75纯化了POLλ2重组蛋白. 经过同位素α-32P-dCTP掺入实验, 证实了POLλ2具有DNA聚合酶活性.     

人细胞生长相关5个新基因的染色体定位及其基因结构

基因的染色体定位对我们研究基因相互关系、基因的组织与进化及理解基因与疾病关系具有重要的意义。本文采用RH-PCR方法及生物信息学方法对PP3898、PP1158、PP753、SP260、HC56等5条人细胞生长相关新基因进行染色体定位,并分析了其基因结构。PP3898及PP1158定位于19p13.3,PP753及SP260定位于1q21.1,HC56定位于17p13.3。PP3898含有19个外显子和18个内含子,可读框为2565bp;PP1158含有7个外显子和6个内含子,可读框为1218bp;SP260含有10个外显子和9个内含子,可读框为690bp;HC56为单外显子,可读框为3141bp。另外,对染色体定位获得的信息进行了分析。 Abstract:Five novel human genes related to cell growth control were newly isolated and identified by high-throughput functional screening.In this paper,the chromosomal localization of these five genes is reported.Radiation hybrid mapping and in silico mapping,and their genomic organization were analyzed respectively.PP3898 and PP1158 were assigned to chromosome 19p13.3,SP260 and PP753 to chromosome 1q21.1,and HC56 to chromosome 17p13.3.PP3898 contains nineteen exons and eighteen introns,PP1158 seven exons and six introns,SP260 ten exons and nine introns,and HC56 only one exon.The implications of chromosomal localization are discussed.