呼吸道合胞病毒B亚型分离株的G蛋白基因分析

对一株长春地区B亚型分离株(CC169)的G蛋白基因进行了 序列分析,结果表明：我国呼吸道合胞病毒(RSV)分离株CC169同RSV B亚型原型株CH18537的 核苷酸同源性为94%,核苷酸的有义突变率达65%。由核苷酸推导出氨基酸序列的同源性为894%,氨基酸的变异全部发生在胞外区,并主要集中在一个高度保守区的两端,胞内区和跨 膜区保守不变。氨基酸的变异导致了分离株既有糖基化位点的改变,又有蛋白长度的变异。 此外还初步探讨了我国RSV B 亚型分离株CC169的G蛋白基因同原型株之间的变异与疫苗研制 中的意义。     

HGV广东株和香港株NS5区部分基因的克隆及序列分析

采用HGV NS5特异的2对引物,对两个香港株和一个广东株HGV-RNA进行逆转录套式PCR扩增,PCR产物克隆入pUC19,重组质粒转化DH5α和JM109菌株.PCR和酶切法鉴定阳性克隆,双脱氧链末端终止法测定核苷酸序列并进行同源性分析.结果发现核苷酸变异呈散在分布,三株间核苷酸和氨基酸序列同源性分别为93.3%～94%及97%～99.2%,与已报道的中国株(CN)相比,则同源性分别为90%～91.2%和94%～96.3%,与美国株(PNF2161及R10291)相比,为87.1%～89.5%和95.2%～97%,而与西非株(GBV-C)相比,则达91.4%～93.8%和97%～97.9%.提示HGV NS5区核苷酸和氨基酸序列相对保守,不同HGV株存在一定的地区差异.     

狂犬病病毒aG株全基因组序列测定及遗传稳定性分析

目的探究狂犬病病毒(Rabies virus,RV)aG株全基因组序列特征及遗传稳定性。方法严格按疫苗生产工艺进行传代,提取主种子批、工作种子批及疫苗原液病毒RNA,通过RT-PCR技术扩增全基因组各片段基因,然后分别将其克隆到p GEM-T载体中,并进行序列测定;采用DNAStar软件包对aG株与Gen Bank中4aGV参考株(JN234411)以及18株基因1型RV参考株进行同源性分析。结果 aG株全基因组由11 925个核苷酸组成,共编码3 600个氨基酸。疫苗原液与主种子批全基因组核苷酸和氨基酸同源性均为100%,而工作种子批与主种子批的核苷酸与氨基酸同源性分别为99.97%和99.92%;aG株与4aGV参考株全基因组核苷酸与推导的氨基酸同源性均为99.9%,其与18株基因1型参考株核苷酸与氨基酸序列同源性分别为84.2%~97.6%和93.7%~98.3%;aG株传代病毒与4aGV参考株全基因组氨基酸序列高度保守,且各主要功能区未发生变异。结论狂犬病病毒aG株在实验室长期生产传代过程中,全基因组遗传特性稳定。     

麻疹病毒S191疫苗株N基因稳定性研究及免疫细胞表位分析

研究麻疹病毒(Measles virus,MeV)疫苗株S191毒种和传代病毒核蛋白(Nucleoprotein,N)基因稳定性及其遗传与变异特点;对该序列一些重要位点的氨基酸进行比较,探讨其功能结构及生物学活性变化以及S191疫苗株的保护效果。利用RT-PCR方法扩增S191减毒株23、26、27、29、32、37不同代次N基因,测序进行比对分析。S191传代病毒N基因序列之间核苷酸同源性99.7%~100%,氨基酸同源性为99.6%~100%;S191株与7个疫苗株之间核苷酸序列同源性达99.1%~99.4%;S191和中国流行代表株序列同源性在95.0%~95.4%;S191与世界流行代表株同源性达94.7%~99.4%;S191疫苗株和中国流行代表株CHN93/7(H1a)的4个重要T细胞表位氨基酸保持一致。S191各传代病毒基因具有较高稳定性,该疫苗有一定的保护作用。     

贵州省25株狂犬病病毒核蛋白基因序列分析

分析贵州省25株狂犬病病毒的核蛋白基因(N基因)序列,探讨贵州省狂犬病流行特征与狂犬病病毒变异情况。以RT-nested PCR检测来自贵州省2005年至2010年不同地区的病人脑组织、病人唾液以及犬脑组织标本狂犬病病毒RNA,经测序与拼接后得到25条N基因全长序列,采用生物信息学软件对N基因序列进行分析。25株狂犬病病毒核蛋白在核苷酸及氨基酸水平上彼此的同源性分别为89.3%～100%和98.%～100%;与国内其他省已发表基因1型狂犬病病毒核苷酸和氨基酸序列同源性分别为88%～99.1%和88%～99.7%,与已知的基因1型狂犬病病毒比较,25株病毒核蛋白氨基酸序列发生了若干位点的取代。进化树分析显示,同一地区内与相邻地区,以及同一时间段与相邻时间段内狂犬病病毒N基因进化亲缘关系相近。25株贵州省狂犬病病毒流行毒株均属基因1型,其核蛋白在基因的核苷酸及推导的氨基酸水平上均有变异,且这些变异具有地域和时间分布特性。     

桃拉综合征病毒中国株ZHZC3全基因测序及分子结构预测

设计8对引物分片段扩增桃拉综合征病毒中国分离株ZHZC3全基因组,病毒两末端序列采用末端快速扩增方法(RACE)获取。扩增产物克隆到pMD18-T载体并测序,用DNAstar软件拼接全序列及同源性比较。结果显示ZHZC3全序列除去3′poly(A)尾,由10202个碱基组成,有两个开放阅读框,分别编码2107和1011个氨基酸的聚蛋白。与美国参考株HI94相比,在编码区没有核苷酸的缺失和插入,但在5′UTR缺失3个A,两者整体核酸同源性达97.9%。ORF1中ZHZC3与HI94及巴西株(BLZ01)的核酸同源性分别为97.6%、97.7%,在ORF2中ZHZC3与HI94、BLZ01的核酸同源性则分别为98.3、97%。与国外株ORF2的部分序列比较发现:ZHZC3和中国台湾株均与美国株HI94同源性最高。克隆分析6株TSV中国大陆株主要结构蛋白CP2基因,发现其编码的氨基酸存在三个高变区,中国大陆株更有其独特的氨基酸变异模式,312(S),449(A),451(Q)和468(H)。表明该病毒的整体变异性不高,但中国的流行株已形成其自己的遗传演变特征。在此基础上,利用生物学软件对CP2蛋白功能域和三维结构进行了预测,为进一步分析CP2蛋白结构与功能关系奠定了基础。ZHZC3株是第一个测定全序列的TSV中国株。     

桃拉综合征病毒中国株ZHZC3全基因测序及分子结构预测

设计8对引物分片段扩增桃拉综合征病毒中国分离株ZHZC3全基因组,病毒两末端序列采用末端快速扩增方法(RACE)获取.扩增产物克隆到pMD18-T载体并测序,用DNAstar软件拼接全序列及同源性比较.结果显示ZHZC3全序列除去3' poly (A)尾,由10202个碱基组成,有两个开放阅读框,分别编码2107和1011个氨基酸的聚蛋白.与美国参考株HI94相比,在编码区没有核苷酸的缺失和插入,但在5' UTR缺失3个A,两者整体核酸同源性达97.9%.ORF1 中ZHZC3与HI94及巴西株(BLZ01)的核酸同源性分别为97.6%、97.7%,在ORF2中ZHZC3与HI94、BLZ01的核酸同源性则分别为98.3、97%.与国外株ORF2的部分序列比较发现ZHZC3和中国台湾株均与美国株HI94同源性最高.克隆分析6株TSV中国大陆株主要结构蛋白CP2基因,发现其编码的氨基酸存在三个高变区,中国大陆株更有其独特的氨基酸变异模式,312 (S), 449 (A), 451 (Q) 和468 (H).表明该病毒的整体变异性不高,但中国的流行株已形成其自己的遗传演变特征.在此基础上,利用生物学软件对CP2蛋白功能域和三维结构进行了预测,为进一步分析CP2蛋白结构与功能关系奠定了基础.ZHZC3株是第一个测定全序列的TSV中国株.     

急性弛缓性麻痹病例中Ⅱ型脊髓灰质炎疫苗病毒变异株基因特征分析

研究Ⅱ型脊髓灰质炎(脊灰)疫苗变异株的基因特征,为我国使用口服脊灰减毒活疫苗/脊灰灭活疫苗使用策略,维持无脊灰状态和全球最终消灭脊灰提供科学依据。根据型内鉴定的检测结果,从2000~2001年AFP病例分离到的Ⅱ型脊灰疫苗变异株中选取有聚集性的5株病毒进行全基因组序列测定(贵州省3株、山东省2株),并进行核苷酸、氨基酸同源性分析。贵州省3株病毒全基因组序列完全一致,但与SabinⅢ型病毒发生重组,重组区域在3A区(nt5343~5353);与疫苗株相比,Ⅱ型区域变异10个碱基,其中VP1区变异4个,与SabinⅡ型株核苷酸同源性为99·56%,氨基酸同源性99·34%;Ⅲ型区域变异9个碱基。山东省2株病毒全基因序列共享16个突变位点,没有发生重组,与SabinⅡ型株相比,VP1区分别变异7个和4个碱基,核苷酸同源性分别为99·22%和99·56%,氨基酸同源性分别为99·0%和99·67%。上述5株病毒在重要的减毒位点nt481、nt2909均发生突变。此研究中5株病毒分属于两个不同的传播链,但是共享nt481、nt2909、nt2992三个突变位点,这3个突变位点不在重组区域内,他们的共同作用可能是影响病毒传播力的重要因素,但目前尚无证据证明脊灰疫苗病毒型间重组会增加病毒的毒力及传播力。     

广东省10株乙型脑炎病毒的分子特征研究

了解广东省目前流行的乙型脑炎病毒的基因型别,以及新分离毒株与P3和SA14-14-2疫苗株E蛋白的氨基酸差异,推测疫苗株的可能保护效果。本研究对广东省2017年从蚊虫和蠓虫标本分离的10株乙型脑炎病毒基因组序列测定,利用MEGA软件登录GenBank下载乙型脑炎病毒代表株序列并绘制进化树,同时用ClustalW2软件与疫苗株进行氨基酸同源性比对和E蛋白的序列分析。10株乙型脑炎病毒均属基因I型GI-b组,但分别位于2个不同的、小的进化分枝中。10株新分离病毒与P3和SA14-14-2疫苗株的E蛋白氨基酸同源性分别位于97.40%~97.60%和97.20%~97.40%之间。E基因区段500个氨基酸中,P3株与新分离乙型脑炎病毒株之间共存在17个氨基酸位点的差异(包括12个共同氨基酸的改变),略高于SA14-14-2疫苗株的16个氨基酸位点变异(包括11个共同氨基酸的改变)。其中在DI区的P3和SA14-14-2株分别有1个和3个共同氨基酸变异,DⅡ区各有5个共同氨基酸改变,DⅢ区分别有5个和2个共同氨基酸改变,结构域之外各有1个共同氨基酸的变异。绝大多数变异发生在非关键位点,只在E306和E388处观察到的氨基酸位点变异与疫苗P3株关键位点的改变有关,这两个位点(G306E,E388G)均发生在DⅢ区,而疫苗SA14-14-2未观察到关键位点的改变。总之,广东省流行的乙型脑炎病毒基因型别可能已由Ⅲ型变为I型;疫苗SA14-14-2株及P3株与新分离毒株均具有很高的同源性,绝大多数关键氨基酸位点未发生变异,对新分离病毒均具有良好的免疫保护价值。     

我国蚊虫体内感染的Wolbachia的wsp基因序列测定与分析

测定了我国尖音库蚊复合组和白纹伊蚊蚊虫体内感染的Wolbachia株的wsp基因序列。核苷酸和氨基酸的同源性及系统关系分析表明,我国尖音库蚊复合组和白纹伊蚊中Wolbachia株的wsp基因序列与Pip组其它株的核苷酸及氨基酸同源性分别为98%～100%和97%～100%, 属B大组Wolbachia中的Pip组。     

Cinnamyl Alcohol Dehydrogenase from Aralia cordata: Cloning of the cDNA and Expression of the Gene in Lignified Tissues

A full-length cDNA clone encoding a subunit of cinnamyl alcoholdehydrogenase (CAD) was isolated from a perennial dicot, Araliacordata. The identity of the clone was demonstrated by two criteria:(i) the amino acid sequences of peptides derived from the purifiedCAD protein of A. cordata were highly homologous to regionsof the amino acid sequence deduced from the nucleotide sequenceof the cDNA; and (ii) a fusion protein expressed from     

Serine proteinase over-expression in relation to deltamethrin resistance in Culex pipiens pallens

Two serine proteinase genes were isolated from Culex pipiens pallens as significantly up-regulated genes in a deltamethrin-resistant strain through a combination of suppression substractive hybridization and gene expression profiling by macroarrays. These two genes were found to be expressed at least threefold higher in the resistant strain than in the susceptible one. By using rapid amplification of cDNA ends to screen the constructed cDNA library, we cloned these two sequences. There were 909 bp with an open reading frame of 786 bp in the sequence of trypsin cDNA (GenBank/NCBI AF468495), the deduced protein had 261 amino acids, which was most similar to the trypsin gene of Anopheles gambiae. There were 992 bp with an open reading frame of 816 bp in the chymotrypsin cDNA (GenBank/NCBI AY034060), and its deduced amino acid sequence had 271 amino acids, which was most similar to the chymotrypsin-like protein from Aedes aegypti. The two genes were stably expressed in mosquito C6/36 cells, and the expected 29 and 30 kDa bands were shown with Western blot, respectively. In these cells, after deltamethrin treatment, they had protective effects on the viability. The results indicate that trypsin and chymotrypsin were more highly expressed in the deltamethrin-resistant strain, and was related to insecticide resistance in mosquitoes, Cx. pipiens pallens.     

Sequence Analysis of Cloned cDNA and Proteolytic Fragments for Nitrate Reductase from Spinacia oleracea L.

Proteolytic fragments were obtained by limited proteolysis of120 kDa nitrate reductase from Spinacia oleracea L. using trypsinand Staphylococcus aureus V8 protease. Determination of NH₂-terminalsequences in 9 to 14 Edman degradation steps allowed the exactlocalization of the fragments within the amino-acid sequenceof spinach nitrate reductase was deduced from the nucleotidesequence of cDNA clone pSPNR117 which was initially identifiedby hybridization to squash nitrate reductase cDNA clone [Crawford,¹N. M., Campbell, W. H. and Davis, R. W. (1986) Proc. Natl. Acad.Sci. USA 83: 8073] and anti spinach nitrate reductase polyclonalantibodies. This clone has a 2324 base insert, and the aminoacid sequence deduced from its open reading frame, which contains640 residues. The predicted sizes 42.5 and 30 kDa were in reasonableagreement with previous determination of the apparent molecularsizes of the FAD-cyt-chrome b557-binding, and FAD-binding fragments,respectively. Arginine residue was the cleavage site for trypsin and glutamicacid was for S. aureus V8 protease. The amino acid residueswithin the linker regions which connect the functional domains,could be cleaved with trypsin or S. aureus V8 protease may bewell conserved in the amino acid sequences deduced from thenitrate reductase cDNA sequences. A sequence identity of 61.2-80.1 % was found in the amino acidsequences deduced from the cDNA sequences as obtained by spinachand other higher plant nitrate reductases. However, the aminoacid sequences surrounding the proteolytic cleavage sites ofnitrate reductase had poor homology. (Received March 30, 1991; Accepted July 24, 1991)     

Molecular cloning of a cDNA that encodes a serine protease with chymotryptic and collagenolytic activities in the hepatopancreas of the shrimp Penaeus vanameii (Crustacea, Decapoda).

Two clones were isolated by screening a shrimp hepatopancreas cDNA library with a DNA fragment obtained by PCR amplification using two oligonucleotides based on the partial protein sequence of Penaeus vanameii chymotrypsin purified earlier. One of these clones, PVC 7 contains a complete cDNA coding for a serine protease. The deduced amino acid sequence shows the existence of a 270 residue-long preproenzyme containing a highly hydrophobic signal peptide of 14 amino acids. This suggests the existence of a putative zymogen form of the enzyme containing a 30 amino acid-long peptide which is cleaved to give a mature protein of 226 residues. A highly preferred codon usage is observed for this protein. The other obtained cDNA was found to encode the less predominant variant of the protein. Sequence alignments show that shrimp chymotrypsin is highly homologous with crab collagenase (77% homology taking into account the same amino acid at the same position, and 83% homology taking into account amino acids with conserved function) and that it is more similar to mouse trypsin (41% homology of strictly conserved amino acids) than to hornet chymotrypsin (35% homology).     

甜菜夜蛾泛素延伸蛋白基因cDNA的3′RACE-PCR扩增及其克隆和表达

根据已知的草地夜蛾Spodoptera frugiperda的泛素延伸基因 5'端核苷酸序列设计引物,应用3'RACE-PCR技术,从甜菜夜蛾S. exigua脂肪体组织总RNA中反转录扩增泛素基因的cDNA片段。扩增得到的片段全长513 bp,3'末端有123 bp的非翻译区,翻译区编码一个长为129个氨基酸残基的蛋白质,预测分子量为14.8 kD。同源分析表明,此cDNA序列为ubiquitin-53aa extension protein(ubi-53) 基因,在泛素蛋白后融合了一个核糖体L40蛋白（ribosomal L40 protein）。用MagAlign和Genedoc软件对cDNA编码的氨基酸序列进行了同源性分析,结果表明： 甜菜夜蛾的ubi-53基因与真核生物家蚕Bombyx mori、草地夜蛾、果蝇Drosophila melanogaster和人Homo sapienes泛素的同源性分别为96.9%、98.5%、95.3%和93.0%,与甜菜夜蛾核型多角体病毒(SeNPV)泛素的同源性为78.8%,说明真核生物的泛素基因与核型多角体病毒的泛素基因可能存在不同的分子进化途径。将甜菜夜蛾的ubI-53基因克隆到原核表达载体pET-28a上,转化至BL21（DE3）中,用IPTG进行诱导表达,用异源泛素单克隆抗体进行Western blot检测,证明原核表达蛋白是目的蛋白。     

辣根过氧化物酶同功酶C基因克隆及其在大肠杆菌中的表达

无论从应用还是从理论研究角度,辣根过氧化物酶（ＨＲＰ）是一种非常重要的酶．ＨＲＰ基因克隆与表达将有利于更深入研究ＨＲＰ的结构与功能．利用反转录ＰＣＲ从天然植物辣根中分离和克隆编码辣根过氧化物酶同功酶Ｃ（ＨＲＰ－Ｃ）一个ｃＤＮＡ,并测定其序列．结果发现,从基因推导出的氨基酸序列与Ｗｅｌｉｎｄｅｒ报道的辣根过氧化物酶序列有９０．６％的同源性．将该基因连接到表达载体ｐＥＴ－２４ｂ上,利用抗ＨＲＰ多克隆抗体进行Ｗｅｓｔｅｒｎｂｌｏｔ,检测有少量目标产物表达．在诱导表达过程中,没有发现细菌生长受抑制或受明显的毒害     

Molecular cloning of complementary DNA encoding one of the human pancreatic protease E isozymes

We have cloned a DNA from a human pancreatic cDNA library using a cloned rat pancreatic elastase 1 cDNA as a probe, and determined its nucleotide sequence. This cDNA contains a coding region of 810 nucleotides which encodes a 270-amino-acid protein. The deduced amino acid sequence shows less than 60% homologies with rat and porcine pancreatic elastase 1, although its substrate binding region is homologous with those of the above elastases 1. When this deduced amino acid sequence was compared with known amino acid sequences of pancreatic proteases other than elastases, it was found to contain an amino acid sequence which was highly homologous with the N-terminal amino acid sequence of porcine pancreatic protease E. We also purified human pancreatic protease E isozymes from human pancreatic juice, and determined their N-terminal amino acid sequences. One of the isozymes does not hydrolyze elastin but does hydrolyze a synthetic substrate. Endoglycosidase F digests glycoside bonds of the isozyme. These results suggest that the cDNA cloned by us corresponded to one of the human protease E isozymes.     

STUDY ON THE DIVERSITY OF CYTOCHROME P450 GENES FROM AEDES ALBOPICTUS*

Abstract Several pairs of specific primers according to the obtained cDNA sequence fragment from deltamethrin‐resistant Aedes albopktus were designed to amplify new CYP6 genes from total RNA of Aedes albopictus by rapid amplification of cDNA ends (RACE) technique. The products of RACE were cloned and selected for sequencing. The deduced amino acid sequences were subjected to homologous analysis. The results indicated that the identities of clone GZS331 sequence from 5′‐RACE products and clone GZG033 sequence from 3′‐RACE products to CYP6N3vl ‐ v3 are 83.9% ‐ 84.3% and 98.2% ‐ 99.1% respectively; while the identities of the others from 3′‐RACE products to CYP6N3v1 ‐ v3 are 84.3% ‐ 85.6%. All of these obtained cDNA sequences have a higher homology to CYP3A1 in mouse and CYP9A1 in moth. The dendrogram constructed by PC/GENE software showed similar results to homologous analysis. These obtained sequences were submitted and named by the P450 Nomenclature Committee. The diversity of cytochrome P450 genes in Culicidae species was discussed.     

淡色库蚊抗药性相关胰蛋白酶基因cDNA全长克隆与序列分析

用逆Northern印迹和Northern印迹法进一步鉴定淡色库蚊对溴氰菊酯抗药性和敏感性品系胰蛋白酶的表达差异 ,结果显示 ,胰蛋白酶基因在抗药性品系中的表达量分别是敏感性品系的 4.3和 3.9倍。采用RACE法筛选cDNA文库 ,获得总长度为 90 9bp的淡色库蚊胰蛋白酶基因的全长序列 ,其中开放阅读框为 786bp ,推导出编码 2 6 1个氨基酸的蛋白质 (GenBank/NCBIAY0 34 0 6 0 ) ,其与冈比亚按蚊胰蛋白酶同源性最高 ,为 5 5 %     

一个新的家蚕转录相关锌带蛋白基因的克隆及序列分析

锌带蛋白(zinc ribbon protein )是锌指类蛋白的一种,它的Cys4 Zn(2+)结合位点由3个β₂片层折叠而成,而不是α螺旋结构。锌带结构与锌指结构同为转录因子结合核酸的结构域,锌带蛋白作为转录相关因子在调节基因表达活性等方面具有重要作用。在对家蚕 Bombyx mori蛹cDNA文库测序中,发现一个新的编码家蚕锌带蛋白基因的EST序列（GenBank 登录号DY230964）,以此序列为信息探针检索家蚕EST数据库,通过同源筛选,获得一个新的家蚕锌带蛋白基因cDNA全序列并经RT-PCR检测和克隆、测序验证,结果表明与电子克隆序列完全一致。我们将其命名为 BmZNRD1 (Zinc Ribbon Domain Containing 1)（GenBank登录号DQ432055）。该基因全长为675 bp,由363 bp的开放阅读框序列(ORF)、10 bp的5′端非翻译区序列(5′UTR)和302 bp 的3′端非编码区序列(3′ UTR)组成,其编码的120个氨基酸序列与其他真核生物间具有较高的同源性（达60%左右）,预测分子量为13.54 kD, 等电点为6.8。BmZNRD1编码的氨基酸序列是一种锌带蛋白,推测有2个功能结构域,分别是位于N-端的Cx₂Cx₁₄Cx₂C和C-端的Cx₂Cx₂₄Cx₂C,其中C-端保守氨基酸序列Cx₂Cx₆Yx₃QxRSADEx₂TxFx₂Cx₂C在生物进化中保守性很高,从酵母、果蝇、线虫到两栖类、哺乳类都有发现该结构域的存在,与酵母RNA聚合酶A亚单位9和转录相关蛋白有很高的相似性,推测其具有相同的功能。将BmZNRD1基因cDNA序列与家蚕基因组序列进行比对,结果表明该基因具有3个外显子,2个内含子,外显子/内含子边界符合经典的GT-AG规则。 关键词： 家蚕; 锌带蛋白基因; 电子克隆; 基因克隆; 序列分析