不同紫花苜蓿品种根瘤菌遗传多样性的PCR-SSCP分析

用PCR-SSCP方法对分离自23个紫花苜蓿品种的42株供试根瘤菌和2株苜蓿根瘤菌参比菌株Sinorhi-zobium meliloti、Sinorhizobium medica进行遗传多样性分析.结果表明,供试的紫花苜蓿根瘤菌存在丰富的遗传多样性,在16S rDNA的V2~V3区段中有12种不同的等位基因,V4~V5区段有13种不同的等位基因,基因型27个;大部分供试菌株的基因型各不相同,来自同一品种菌株之间表现出不同的基因型,来自不同品种的菌株却表现出相同的基因型;9株供试菌株在V2~V3区段的基因型与参比菌株S.meliloti相同,所有供试菌株的基因型与参比菌株S.medica都不同.     

如东田菁根瘤菌遗传多样性及高效促生菌株筛选

摘要:【目的】研究江苏如东沿海滩涂田菁根瘤菌的遗传多样性和系统发育,筛选高效促生田菁根瘤菌。【方法】采用16S rRNA基因、持家基因(recA、atpD、glnⅡ)、共生基因(nodA、nifH)的系统发育分析,并进行温室盆栽接种试验筛选高效菌株。【结果】分离到的32株田菁根瘤菌分布于Ensifer、Neorhizobium、Rhizobium,并与E. meliloti、N. huautlense、E. sesbaniae、R. pusense 亲缘关系最近。共生基因nodA、nifH的系统进化分析结果基本一致,均与E. saheli 最为相近。7株代表菌株均能耐受5%的NaCl(W/V)浓度,其中YIC5082耐盐性最强,能够耐受6%的NaCl。温室盆栽试验表明7 株代表菌株均能与田菁有效结瘤固氮,其中6株菌显著提高了植株的株高和鲜重。【结论】江苏如东沿海滩涂田菁根瘤菌具有较丰富的遗传多样性,其中N．huautlense、E．meliloti为优势种。该地区的田菁根瘤菌多数具有较好的共生有效性及耐盐性,YIC5077促生效果最为突出,并表现出较强的固氮及结瘤能力,具有良好的应用前景。     

丛枝菌根真菌和根瘤菌互作对苜蓿根际土壤细菌群落结构的影响及PICRUSt功能预测分析

【背景】紫花苜蓿是优良的豆科牧草,可以与丛枝菌根(Arbuscular mycorrhizae,AM)真菌和根瘤菌形成共生关系,接种AM真菌和根瘤菌可以促进土壤氮、磷循环以及提高苜蓿产量。【目的】探究接种AM真菌和根瘤菌对苜蓿根际细菌群落结构和功能的影响。【方法】采集6个不同处理组苜蓿根际、非根际土壤样品,基于细菌16S rRNA基因V3?V4区进行高通量测序,分析比较不同处理组苜蓿根际、非根际土壤中细菌群落分布的规律,并采用PICRUSt软件对不同处理组间菌群功能进行预测。【结果】36个土壤样品中共检测到3 849个OTU,分属于50门59纲132目249科595属398种。其中主要的优势菌门为Proteobacteria (52.81%?81.46%)、Bacteroidetes (7.83%?19.68%)及Actinobacteria (2.21%?16.4%)。与不接种相比,接种根内球囊霉和摩西球囊霉分别提高了Gammaproteobacteria和Bacteroidia有益菌的丰度,接种根瘤菌提高了固氮菌(Alphaproteobacteria)的丰度。PICRUSt功能预测表明,细菌菌群共有35个子功能,菌群功能丰富,代谢为最主要的功能,并且接种根瘤菌可增加氨基酸代谢,从而有利于植株N素循环,而接种AM真菌可能对于N循环有一定的抑制作用,相比于单接种AM真菌,双接种AM真菌和根瘤菌处理组碳水化合物代谢更强,从而更有益于植株的氮、磷循环。【结论】接种AM真菌和根瘤菌可分别提高苜蓿根系与氮、磷循环有关的不同有益菌的丰度,从而更有益于植株的氮、磷循环,该结果为提高植株养分吸收、提高苜蓿产量以及菌肥开发利用提供了科学依据。     

一株能在大豆上结瘤的苜蓿中华根瘤菌

苜蓿中华根瘤菌(Sinorhizobium meliloti)XJ96077分离自新疆的苜蓿根瘤中,其原宿主为紫花苜蓿(Medicago sativa)。交叉结瘤试验发现,它既可在苜蓿上又能在大豆上结瘤固氮。DNA(G C)mol％分析表明,XJ96077的DNA(G C)mol％为61．9％,与已报道的根瘤菌属的DNA(G C)mol％范围(59％-64％)相符。DNA同源性分析表明,XJ96077与苜蓿中华根瘤菌USDA1002^T和042BM的同源性分别达到93％和80％,说明XJ96077归属于苜蓿中华根瘤菌。应用绿色荧光蛋白基因标记XJ96077,得到重组菌株XJ96077(G)。将其接种普通紫花苜蓿,通过激光共聚焦荧光显微镜可以检测到标记基因的表达。接种北引1号大豆上,同样可以清楚地观察到标记基因在根瘤中的表达,从而确证了XJ96077能同时在苜蓿和大豆上结瘤。通过不同品种大豆的结瘤试验,发现XJ96077对大豆品种的结瘤能力不同。     

不同施钾水平对苜蓿营养物质及抗蓟马性的影响

【目的】明确施钾是否能有效提高苜蓿对蓟马的抗性以及钾-营养物质-抗虫性之间的关系。【方法】以感蓟马紫花苜蓿Medicago sativa品种甘农3号(Gannong No.3)和抗蓟马紫花苜蓿品种甘农9号(Gannong No.9)为材料,设0,6,9,12和15 g/m2(K2O)5个钾水平,在大田蓟马为害高峰期,评价和测定了不同钾水平处理下苜蓿的受害指数、虫口数量、叶片钾含量、碳氮比和游离氨基酸变化。【结果】在第2茬中,随着钾水平的升高,甘农3号和甘农9号老叶和心叶的钾含量上升,可溶性糖和碳氮比升高,游离氨基酸含量下降,虫口数量无显著性差异,受害指数显著降低(P0.05),且在9 g/m2(K2O)水平下最低。在第3茬中,甘农3号和甘农9号的受害指数、叶片钾含量、碳氮比及游离氨基酸的变化规律和第2茬相同,但虫口数量上升。第2茬和第3茬中,不同施钾水平下,苜蓿叶片钾含量与受害指数负相关但不显著(P0.05)。施钾后甘农3号的受害指数均低于未施钾甘农9号的受害指数。【结论】钾元素可通过提高苜蓿碳氮比,降低游离氨基酸的含量来提高苜蓿对蓟马的耐害性。在大田条件下,通过施钾管理来提高苜蓿品种对蓟马的耐害性是一种有效的措施。     

禾本科植物内生真菌研究20：基于NRPS5基因的我国东部早熟禾亚科植物内生真菌系统发育学分析

【背景】冷季型禾草-Epichloae真菌内生共生体在我国广泛存在,Epichloae内生真菌具有遗传多样性。【目的】选取来自江苏、山东和安徽等6省共8地的早熟禾亚科植物中的21个Epichlo?sp.菌株,检测菌株的NRPS5基因;分析不同宿主内Epichlo?属内生真菌NRPS5基因多样性。【方法】提取Epichlo?spp.菌株DNA,利用特异性引物对菌株中NRPS5基因进行PCR检测和序列分析,并基于NRPS5基因构建最大简约法系统发育树。【结果】NRPS5基因可能广泛分布于我国东部冷季型禾本科植物Epichloae内生真菌中。在同种内生真菌和同一宿主(除鹅观草)中的不同种内生真菌中NRPS5基因相对保守,但不同宿主的内生真菌其碱基序列差异大,与宿主植物采集地点、采集时间和子座的有无均无相关性,NRPS5基因的差异主要与宿主植物有关。这说明NRPS5基因序列比较保守,推测属于NRPS蛋白的功能核心区。【结论】NRPS5基因序列相对保守,可作为真菌遗传多样性分析的一种辅助手段。     

云南省德宏州含羞草β-根瘤菌多样性及系统发育研究

【目的】通过对分离自云南德宏州的含羞草β-根瘤菌进行遗传与表型多样性研究,揭示我国含羞草β-根瘤菌的物种多样性。【方法】应用16S rDNA PCR-RFLP、全细胞蛋白SDS-PAGE电泳及16S rDNA全序列分析对分离得到的60株含羞草根瘤菌进行多样性研究。【结果】16S rDNA PCR-RFLP及全细胞蛋白SDS-PAGE图谱分析将供试菌株分为2个遗传型群和2个表型群,分别与贪铜菌属(Cupriavidus)和伯克霍尔德菌属(Burkholderia)参比菌株聚群。经16S rDNA全序列分析,供试菌株被归到台湾贪铜菌(Cupriavidus taiwanensis)、含羞草伯克霍尔德菌(Burkholderia mimosarum)及结瘤伯克霍尔德菌(Burkholderia phymatum)等3个种群。【结论】云南德宏州的含羞草β-根瘤菌主要为贪铜菌及伯克霍尔德菌类群,其中贪铜菌占绝对优势,且存在遗传和表型的丰富多样性,该研究揭示了含羞草β-根瘤菌的物种多样性并丰富了我国β-根瘤菌菌种资源。     

应用BOX分子标记技术筛选南苜蓿高效根瘤菌菌株

【目的】应用BOX-PCR技术对12株南苜蓿(Medicago polymorpha)接种根瘤菌菌株在土壤中的竞争结瘤能力进行研究,以占瘤率的高低配合植物生长性状最终确定与南苜蓿共生的高效根瘤菌菌株。【方法】对接种根瘤菌产生的南苜蓿根瘤进行分离培养,选择部分结瘤菌株和12株全部供试接种菌株进行BOX分子指纹图谱研究,经过对图谱的比较与分析获得了各接种菌株的占瘤率。【结果】在供试菌株中,来自于云南盈江的菌株SWF67523占瘤率最高,为93.33%,说明菌株SWF67523具有较强的竞争结瘤能力,该菌株对南苜蓿干重增幅也较高,为100%;菌株SWF67409来自于云南楚雄,其占瘤率略低于菌株SWF67523,但其对提高植物干重的贡献最大(增幅106.5%);来自于云南楚雄的菌株SWF67394占瘤率较低,但其结瘤率高,对植物生长的影响作用也较明显。【结论】将根瘤菌菌株的竞争结瘤能力纳入南苜蓿高效根瘤菌菌株的筛选中,研究获得了一株竞争结瘤能力强、显著提高植物生物量的菌株SWF67523,以及促生根瘤菌菌株SWF67409和SWF67394,为生产高效根瘤菌菌剂提供了物质基础。     

攀枝花地区烤烟可培养内生固氮菌的多样性

【目的】认识烤烟(Flue-cured tobaccos)内生固氮菌多样性,挖掘内生固氮菌资源,丰富内生固氮菌基因库。【方法】运用纯培养法、重复因子扩增(BOX-PCR)分析技术、16S r RNA基因测序和系统发育分析对内生固氮菌多样性和系统发育进行研究,并测定分离菌株的固氮酶活性、溶磷溶钾特性、吲哚乙酸(IAA)含量等指标。【结果】通过Ashby培养基共分离得到62株固氮菌。基于BOX-PCR图谱选取16株代表菌株进行16S r RNA基因序列测定。16S r RNA基因序列系统发育分析显示,62株菌株分属于芽孢杆菌属(Bacillus)、泛菌属(Pantoea)、短小杆菌属(Curtobacterium)等3个属,其中芽孢杆菌属(Bacillus)为优势菌属。62株菌株中有20株菌株(占总分离菌株的32.3%)具有固氮酶活性,8株菌株(占总分离菌株的12.9%)能产IAA,有4株(占总分离菌株的6.5%)表现溶磷活性,有3株(占总分离菌株的4.8%)表现溶钾活性。【结论】攀枝花烤烟有较为丰富的内生固氮菌,具有潜在应用价值。     

宁夏枸杞深色有隔内生真菌的侵染特征及多样性

【背景】枸杞是享誉中外的名贵药材,深色有隔内生真菌(Dark septate endophytes,DSE)是枸杞内生真菌的重要组成部分。【目的】从宁夏枸杞栽培品种和野生品种的根系分离获得DSE菌株,研究枸杞DSE的群落组成、物种多样性及在宿主植物内的侵染定殖情况。【方法】从宁夏枸杞栽培园采集栽培品种宁杞1号、宁杞3号、宁杞5号、宁杞6号、宁杞7号、宁杞8号以及野生品种黄果枸杞和黑果枸杞共8个枸杞品种的根系,分离DSE菌株,运用形态学特征、r DNA-ITS序列分析进行菌株鉴定,采用回接试验方法确定DSE真菌。【结果】DSE在枸杞根系能形成大量"微菌核"典型结构。从8个枸杞品种根系中共分离获得DSE菌株279株,分属于18个属,具有丰富的物种多样性。镰刀菌属(Fusarium)为各品种的共有属和优势属,相对频率最高达85%。Monosporascus、蓝状菌属(Talaromyces)和俄氏孔菌属(Earliella)为枸杞内首次报道的DSE。枸杞不同品种中DSE群落物种多样性指数、均匀度指数和Simpson指数差异显著。【结论】DSE在枸杞栽培品种及野生品种中具有丰富的生物多样性,能够与枸杞根系形成良好的共生关系,增强了枸杞对生态环境的适应性。     

Rarity facets of biodiversity: Integrating Zeta diversity and Dark diversity to understand the nature of commonness and rarity

Measuring commonness and rarity is pivotal to ecology and conservation. Zeta diversity, the average number of species shared by multiple sets of assemblages, and Dark diversity, the number of species that could occur in an assemblage but are missing, have been recently proposed to capture two aspects of the commonness‐rarity spectrum. Despite a shared focus on commonness and rarity, thus far, Zeta and Dark diversities have been assessed separately. Here, we review these two frameworks and suggest their integration into a unified paradigm of the “rarity facets of biodiversity.” This can be achieved by partitioning Alpha and Beta diversities into five components (the Zeta, Eta, Theta, Iota, and Kappa rarity facets) defined based on the commonness and rarity of species. Each facet is assessed in traditional and multiassemblage fashions to bridge conceptual differences between Dark diversity and Zeta diversity. We discuss applications of the rarity facets including comparing the taxonomic, functional, and phylogenetic diversity of rare and common species, or measuring species'' prevalence in different facets as a metric of species rarity. The rarity facets integrate two emergent paradigms in biodiversity science to better understand the ecology of commonness and rarity, an important endeavor in a time of widespread changes in biodiversity across the Earth.     

功能、谱系多样性在机场鸟类群落研究中的应用——以扬州泰州国际机场为例

随着航空业的发展,野生动物与飞机之间的冲突愈发密集,机场鸟类群落多样性研究引起了大量关注。研究鸟类群落对生境类型的使用状况,可以掌握生境类型与鸟击风险的潜在关系,为机场环境改造提供理论依据。本研究于2019年7月至2021年11月,采用样点法对扬州泰州机场及周边8 km范围内的农田、湿地、林地和城镇4种生境中30个样点的鸟类群落进行调查。利用鸟类群落多样性指数,包括丰富度、多度、香农威纳多样性指数、辛普森多样性指数以及均匀度指数来表征群落的物种多样性,以及功能和谱系多样性,阐明机场周边4种生境的鸟类群落多样性差异。同时,基于多度加权的平均成对功能距离（MFD）和平均成对谱系距离（MPD）来表征群落的功能和谱系结构,探究群落构建机制,量化各多样性指标间的相关性。研究共记录扬州泰州国际机场鸟类88种,分别隶属于14目36科,目、科中数量最多的为雀形目（Passeriformes）和鹬科（Scolopacidae）。谱系和功能多样性在生境间差异显著,功能分散度在农田最高,城镇最低;谱系多样性指数在城镇最高,湿地最低。标准化效应值分析表明,随机生态过程影响了湿地鸟类群落功能和谱系的构建过程,农...     

Net primary productivity and seasonality of temperature and precipitation are predictors of the species richness of the Damselflies in the Amazon

Several hypotheses have been proposed to explain the mechanisms that generate temporal and spatial species richness patterns. We tested four common hypotheses (water, energy, climatic heterogeneity and net primary productivity) to evaluate which factors best explain patterns of Zygoptera species richness. Of these, we predicted that climatic heterogeneity would be the most important predictor for Zygoptera richness patterns. We sampled communities of adult Zygoptera in 100 small Amazonian streams. Based on generalized linear mixed models (GLMM), we found that net primary productivity and climatic heterogeneity comprised the best model of Zygoptera species richness in Amazonian streams, with an pseudo r² of 39.5%. Results indicate that species richness increases by one species per 1 kg of biomass per square meter in NPP, or with an increase of 2 °C in air temperature variability. Our work corroborates a recent study with other taxa in Brazilian Bioms. This suggests that temporal variation in climate and net primary productivity are important predictors of the macroecological patterns of richness for aquatic organisms in tropical regions.     

Genotypic and symbiotic diversity of native rhizobia nodulating red pea (Lathyrus cicera L.) in Tunisia

Nodulation and genetic diversity of native rhizobia nodulating Lathyrus cicera plants grown in 24 cultivated and marginal soils collected from northern and central Tunisia were studied. L. cicera plants were nodulated and showed the presence of native rhizobia in 21 soils. A total of 196 bacterial strains were selected and three different ribotypes were revealed after PCR-RFLP analysis. The sequence analysis of the rrs and two housekeeping genes (recA and thrC) from 36 representative isolates identified Rhizobium laguerreae as the dominant (53%) rhizobia nodulating L. cicera. To the best of our knowledge, this is the first time that this species has been reported among wild populations of the rhizobia-nodulating Lathyrus genus. Twenty-five percent of the isolates were identified as R. leguminosarum and isolates LS11.5, LS11.7 and LS8.8 clustered with Ensifer meliloti. Interestingly, five isolates (LS20.3, LS18.3, LS19.10, LS1.2 and LS21.20) were segregated from R. laguerreae and clustered as a separate clade. These isolates possibly belong to new species. According to nodC and nodA phylogeny, strains of R. laguerreae and R. leguminosarum harbored the symbiotic genes of symbiovar viciae and clustered in three different clades showing heterogeneity within the symbiovar. Strains of E. meliloti harbored symbiotic genes of Clade V and induced inefficient nodules.     

中国温带荒漠区的植物多样性及其易地保护*

^{荒漠植物多样性研究及其保护是生物多样性保护的重要组成部分。 中国荒漠区植物种类贫乏（约1000余种）,分布稀疏,生物量小,起源古老,地理成份复杂（有14个地理分布型）, 特有成份多（80余种）,珍稀濒危植物种类相对较多（50～60种）,在荒漠气候和特殊的土壤基质条件下, 形成了多种生态型和特殊的生活型,为荒漠植物多样性易地保护提供了可能性和必要性。 处于亚洲荒漠区的吐鲁番沙漠植物园的研究工作,正从传统的植物引种驯化和经济植物栽培,向荒漠区系植物多样性保护领域转移,现园内保存的荒漠区系植物成份已达42.2％,特有种和珍稀濒危植物也占相当比例。 长期适应荒漠环境的各类植物具有多种多样的抗逆性基因,因而有着潜在的开发利用前景。}     

Genomic and physiological diversity amongst strains of Thiobacillus ferrooxidans,and genomic comparison with Thiobacillus thiooxidans

Twenty-three strains of Thiobacillus ferrooxidans of known pedigree were examined. Thirteen strains survived 65° C for 5 min and 7 of these for 10 min, but sporulation was never observed. All strains grew between 25° C and 35° C and some strains grew at 5° and 40° C. They were genomically diverse, comprising 7 DNA homology groups, and the GC content varied from 55–65 mol %. Correlation between genomic group and growth temperature was noted. All strains grew on ferrous sulfate as energy source, but some failed to utilize elemental sulfur. Acidified thiosulfate supported growth of most of the strains examined but it was judged to be a poor substrate upon which to base taxonomic conclusions because of decomposition of thiosulfate in acid. Six strains of Thiobacillus thiooxidans showed negligible genomic affinity to T. ferrooxidans, and they comprised 2 DNA homology groups and their GC content varied from 52–62 mol%. Anomalies due to contaminants in cultures of T. ferrooxidans were resolved, and the contaminants were identified.     

菌根多样性及其对植物生长发育的重要意义

菌根多样性是生物多样性的重要组成部分。主要包括形态多样性、物种多样性和功能多样性．大量试验表明。菌根多样性对植物物种的起源与进化、分布与生存、生长和发育等方面起着至关重要的作用。而植物多样性又决定了菌根多样性．认为菌根多样性与植物多样性是相辅相成、相互制约的。随着分子生物学技术的不断发展和完善。必将使菌根多样性的研究得到快速发展．     

The relationship between the concepts of genetic diversity and differentiation

Summary Diversity as a measure of individual variation within a population is widely agreed to reflect the number of different types in the population, taking into account their frequencies. In contrast, differentiation measures variation between two or more populations, demes or subpopulations. As such, it is based on the relative frequencies of types within these subpopulations and, ideally, measures the average distance of subpopulations from their respective lumped remainders. This concept of subpopulation differentiation can be applied consistently to a single population by regarding each individual as a deme (subpopulation) of its own, and it results in a measure of population differentiation _T which depends on the relative frequencies of the types and the population size. _T corresponds to several indices of variation frequently applied in population genetics and ecology, and it verifies these indices as measures of differentiation rather than diversity. For any particular frequency distribution of types, the diversity is then shown to be the size of a hypothetical population in which each type is represented exactly once, i. e. for which _T =1. Hence, the diversity of a population is its differentiation effective number of types. This uniquely specifies the link between the two concepts. Moreover, again corresponds to known measures of diversity applied in population genetics and ecology. While population differentiation can always be estimated from samples, the diversity of a population, particularly if it is large, may not be. In such cases, it is recommended that population differentiation is estimated and the corresponding sample diversity merely computed. Finally, a solution to the problem of measuring multi-locus diversities is provided.