一株毒死蜱降解细菌的分离鉴定及其在土壤修复中的应用

从蔬菜大棚土壤中分离到一株能以毒死蜱为唯一碳源和能源生长的菌株DSP3,该菌在含毒死蜱（100mg/L）的酵母膏和蛋白胨与同样毒死蜱含量而无酵母膏蛋白胨的无机盐培养基中,18d对毒死蜱的降解率分别为986%和762%;在土壤实验中20d对毒死蜱（100mg/kg）的降解率接近100%,加入DSP3菌在蔬菜大棚新鲜土壤中能有效促进毒死蜱在土壤中的降解。根据生理生化特征、16S rDNA序列分析、（G+C）mol%测定和DNA同源性分析,将菌株DSP3鉴定为粪产碱杆菌（Alcaligenes faecalis）。     

一株新的胡萝卜软腐欧文氏菌的分离和鉴定

从大白菜软腐组织中分离出一株软腐病细菌BC1,经过形态观察、生理生化特性分析、致病性检测和16S rDNA序列分析,该分离物被鉴定为胡萝卜软腐欧文氏菌胡萝卜亚种（Erwinia carotovora subsp. carotovora, Ecc）的一个新菌株,编号为BC1。这是首次从16S rDNA序列水平上对在我国分布的软腐欧文氏菌进行鉴定。Ecc BC1的16S rDNA序列与其它软腐欧文氏菌株的16S rDNA序列之间同源性达987%～993%,而且在系统发育树中独立于Ecc其它菌株。序列分析结果表明,Ecc BC1具有至少2种不同的16S rDNA序列,它们都在第459位和473位（相对于大肠杆菌16S rDNA序列）发生碱基突变,同一基因中两个突变位点之间彼此互补,处于16S rRNA螺旋H17颈部,而且这两处碱基变异只存在于BC1菌株中。通过与其它软腐欧文氏菌亚种和菌株16S rDNA序列进行比对分析,还进一步鉴定出一些BC1菌株特异的16S rDNA碱基突变位点。本文报道的Ecc BC1两个16S rDNA序列在GenBank中的登录号分别为AY309068和AY309069。     

一株多菌灵降解细菌的分离、鉴定及系统发育分析

从被多菌灵污染的湖南红壤土中分离到一株能以多菌灵为唯一碳源和能源生长的菌株1_1,该菌在含酵母膏多菌灵(500mg/L)的无机盐培养基中与无酵母膏的多菌灵(500mg/L)无机盐培养基中,24d对多菌灵的降解率分别为95.56％和19.6％。根据表型特征、G+C含量及16S rDNA序列分析将菌株1-1鉴定为β-Proteobacteria中的Ralstonia sp.（罗尔斯通氏菌）。     

一种短杆状耐辐射菌的分离与鉴定

从北京地区公园湖岸土壤中分离到一株橙红色杆状耐辐射菌,细胞壁革兰氏染色为阴性,电镜显示菌体大小为06μm～16μm,略大于日本学者报道的Deinobacter grandis菌,过氧化氢酶的含量和分子量不同于D.radiodurans R1菌,分离菌的(G+C)mol%含量为707%, 16S rDNA序列分析表明,分离到的杆状耐辐射菌(RR5332)16S rRNA基因序列与Deinobacter grandis菌高度同源,提示RR5332归于Deinobacter菌属,并可能是该菌属中的一个新种。     

石油生物催化脱硫菌Agrobacterium tumefaciens UP3的分离筛选

从胜利油田被原油污染的土壤中筛选到一株能有效降解模型化合物二苯并噻吩（DBT）的菌株。根据常规的形态分析、生理生化性状及16S rDNA序列分析,将其鉴定为根癌土壤杆菌（Agrobacterium tumefaciens UP3）。该菌不能以十二烷、十六烷、液体石蜡和萘作为唯一碳源和能源生长,具有工业应用的潜力。对该菌株DBT降解能力的初步研究表明,54h内可将500mg/L的DBT降解至150mg/L。对降解产物的分析表明,根癌土壤杆菌降解DBT的途径与Kodama路线及4_S路线不同。     

六六六（HCH）降解菌Sphingomonas sp. BHC_A的分离与降解特性的研究

从长期受六六六污染的土壤中分离得到一株能以HCH为唯一碳源的高效降解菌株 BHC_A。通过对其主要生理生化特征分析,以及16S rDNA序列的测定和同源性比较分析,将BHC_A鉴定为鞘氨醇单胞菌属（Sphingomonas sp.）。BHC_A菌株在12h以内能够完全矿化浓度分别为5mg/L的α_、β_、γ_、δ_HCH 4种异构体,特别是对β_HCH的降解在国际上也属少例。而前人所报道的γ_HCH降解菌Sphingomonas paucimobilis UT26菌株对β_HCH和δ_HCH不产生降解作用,即使经过24h的培养,对5mg/L的α_HCH的降解率也只有12.6%。在黄瓜的盆钵试验中发现,15d后BHC_A在土壤中对α、β_、γ_、δ_HCH 4种异构体的降解率为84.3%,能够有效地消除土壤中六六六的污染,缓解植株受药害症状。     

适冷海洋细菌交替假单胞菌（Pseudoalteromonas sp.）MB-1内切葡聚糖酶基因的克隆和表达

从黄海深海海底淤泥中筛选出一株产纤维素酶的适冷革兰氏阴性杆菌MB1,克隆和分析了MB1的16S rDNA序列（GenBank接受号：AY551321）,经鉴定为交替假单胞菌（Pseudoalt eromonas）,命名为Pseudoalteromonas sp.MB1。克隆了该菌适冷内切葡聚糖酶基因celA（GenBank接受号：AY551322）,并在大肠杆菌（Escherichia coli）BL21中进行了表达。重组E.coli菌体破碎后,获取上清液,其中融合蛋白GSTCelA浓度约为78.5mg/L。分析了融合酶GSTCelA的性质,其最适反应温度为35℃,最适反应pH值为72,为中性适冷酶。实验结果为交替假单胞菌低温纤维素酶的基础理论和应用研究奠定了基础。     

产顺式环氧琥珀酸水解酶的红球菌M1菌株的分离鉴定及其产酶条件优化

从土壤中筛选到一株产顺式环氧琥珀酸水解酶（ESH）的菌株,经生理生化、Biolog碳源利用试验和16S rDNA序列分析系统发育研究,菌株可能为赤红球菌(Rhodococcus ruber) M1。摇瓶试验确定了最佳碳源、氮源、顺式环氧琥珀酸二钠添加时间和添加量。正交优化试验的最佳培养基和培养时间为：葡萄糖12%,硫酸铵06%,酵母膏05%;顺式环氧琥珀酸二钠投加时间为30h,投加量为358%;菌体培养时间70h。摇瓶试验ESH酶活达750U/g湿细胞。目前该菌株已经应用于固定化细胞连续生产L(+)酒石酸。     

斑点叉尾(鱼回)一株致病菌的分离鉴定及系统发育分析

从发生急性流行性传染病的斑点叉尾NFDA5肝、肾分离到一高致病性的菌株（CCF00024）,经人工感染实验证实其为该病的病原菌。对该菌的形态、生理生化及16S rDNA序列分析结果表明,其为非发酵型,严格需氧,革兰氏阴性杆菌,极生多鞭毛,对除麦芽糖和甘露糖以外的多种糖类不能利用产酸,氧化酶阴性,DNA酶、蛋白酶、脲酶、赖氨酸脱羧酶阳性,MR阴性。在以该菌16S rDNA序列（GenBank登录号AY970826）和GenBank及RDP数据库内同源性较高的细菌16S rDNA序列构建的系统发育树中,分离菌CCF00024与嗜麦芽寡养单胞菌（Stenotrophomonas maltophilia）聚在一簇,特别是与S. maltophilia M51的同源性最高,其序列相似性达99.6%,结合形态和生理生化特点将其鉴定为嗜麦芽寡养单胞菌（Stenotrophomonas maltophilia）。     

一株牙鲆皮肤溃烂症病原菌的鉴定

从山东荣成养鱼场发病牙鲆分离到一株病原菌M3,革兰氏阴性,杆状,能运动,菌落半透明,用BIOLOG细菌鉴定系统不能鉴定。通过16S rDNA序列分析和同源性检索发现M3菌株与弧菌属的同源性较高,为94%～98%。系统发育学分析表明菌株M3与鳗弧菌关系最近,相似性为996%,其生化性状也和鳗弧菌的特征相似,故可把M3定为鳗弧菌(Vibrio anguillarum)。     

Paracoccus bengalensis sp. nov., a novel sulfur-oxidizing chemolithoautotroph from the rhizospheric soil of an Indian tropical leguminous plant

Paracoccus versutus-like isolates from the rhizosphere of Clitoria ternatea, a slender leguminous herb (family--Papilionaceae), found ubiquitously in waste places and village forests of the Lower Gangetic plains of India, presented a case of graduated infraspecific variation that was capped by the identification of a new species Paracoccus bengalensis (type strain JJJ(T) = LMG 22700(T) = MTCC 7003(T)). The diverged phenetic and genetic structure of these sulfur-oxidizing chemolithoautotrophs presented a case of apparent nonconformity of 16S rRNA gene sequence similarities with results of DNA-DNA hybridization. Despite high 16S rRNA gene sequence similarity with P. versutus one of the newly isolated strains, viz., JJJ(T) was identified as a new species of Paracoccus by virtue of its explicitly low DNA-DNA hybridization (42-45%) with the type strain of the closest species P. versutus (), distinct G + C content (65.3 mol%), physiological and biochemical differences amounting to <60% phenetic similarity with strains of P. versutus as well as new isolates akin to the species. The newly described species also had a unique fatty acid profile that was distinguished by the absence of 18:1 omega9c, unique possession of Summed feature 3 (16:1omega7c & 15:0 iso 2-OH), 19:0 10 methyl, and a much higher concentration of 19:0 cycloomega8c.     

一株好氧反硝化菌的分离及特性研究

从土壤中分离得到一株好氧反硝化细菌CY1, 该菌株在厌氧和好氧条件下均具有反硝化能力。硝酸盐氮初始浓度为137.25 mg/L, 30 h内硝酸盐氮去除率分别为99.98%(厌氧)和60.16%(好氧)。通过形态学特征、生理生化特性及16S rDNA同源性比较对菌株CY1进行鉴定, 初步判断CY1为泛养副球菌(Paracoccus pantotrophus)。     

Nitrate-dependent [Fe(II)EDTA]2- oxidation by Paracoccus ferrooxidans sp. nov., isolated from a denitrifying bioreactor

Enrichments with [Fe(II)EDTA]2- as electron donor and nitrate or nitrite as electron acceptor were established using an inoculum from a bioreactor performing denitrification. A nitrate-reducing, [Fe(II)EDTA]2- oxidizing strain was isolated and named strain BDN-1. The G + C content of strain BDN-1 was 67%, and the organism was closely affiliated to Paracoccus denitrificans, P. pantotrophus and P. versutus by 16S rRNA sequence comparison. Results from DNA-DNA hybridization, rep-PCR, and whole cell protein analysis gave congruent results confirming the genotypic and phenotypic differences between strain BDN-1 and the other species of Paracoccus. From these results, we considered strain BDN-1 as a novel species for which we propose the name Paracoccus ferrooxidans. Apart from [Fe(II)EDTA]2-, BDN-1 could also use thiosulfate and thiocyanate as inorganic electron donors. Nitrate, nitrite, N2O, [Fe(II)EDTA.NO]2- and oxygen could be used by strain BDN-1 as electron acceptors. Repeated transfer on a culture medium with bicarbonate as the sole carbon source confirmed that strain BDN-1 was a facultative autotroph. [Fe(II)EDTA]2- oxidation dependent denitrification was also performed by other Paracoccus species, that were closely affiliated to P. ferrooxidans.     

一株高耐镉硫酸盐还原菌的分离及脱硫性能研究

本研究从镉污染稻田水稻根际土壤中分离、纯化出一株硫酸盐还原菌SRB1-1,并对该菌株的生理生态特征、镉和盐耐受性、16S rDNA、脱硫性能及影响因子进行了系列分析。结果表明,该菌为革兰氏阴性菌,菌体弧状,对镉离子的耐受浓度可达200 mg/L,在2%的氯化钠浓度下仍可生长。对其16S rDNA的序列分析表明该菌株属于脱硫弧菌属(Desulfovibrio)。单因子实验考察温度、pH及SO_4~(2-)浓度对该菌脱硫效率的影响,正交实验确定了该菌最佳脱硫工艺条件及影响因子顺序。结果表明最佳脱硫工艺条件为pH 7.5、温度40℃、SO_4~(2-)浓度为1 000 mg/L、培养时间56 h。     

锐劲特降解菌株R-2的分离、鉴定及降解特性

从长期受锐劲特污染的农药厂活性污泥中分离到一株锐劲特降解菌株R-2, 根据其生理生化特征和16S rRNA基因序列同源性分析, 将该菌株鉴定为Paracoccus sp.。菌株R-2能以锐劲特为唯一碳源生长, 在含有50 mg/L的锐劲特的基础盐培养基中, 3 d的降解率达到85%。菌株R-2降解锐劲特的最适温度为30 °C, 最适pH值为6.0?7.0, 其降解锐劲特的效率与锐劲特初始浓度呈负相关。添加0.1 mmol/L的Zn2+或Fe3+能够显著促进菌株对锐劲特的降解。灭菌与非灭菌土壤降解试验表明, 菌株R-2均可以在10 d内降解63.4%?71.2%的100 μg/g的锐劲特。     

日本三宅岛火山土壤中硫代硫酸盐氧化菌的分离、生物学特性及鉴定

【目的】利用培养法从日本三宅岛火山土壤(堆积年限131年)中分离到一株能氧化分解硫代硫酸盐的细菌MU2A-22T。【方法】用培养法对该菌株MU2A-22T进行了生理生化性质以及分类学位置上的确定。【结果】菌株MU2A-22T为革兰氏阴性,短杆状或球状。理化性质表明该菌株能利用葡萄糖、L-阿拉伯糖、葡萄糖酸盐、己二酸酯、dL-苹果酸钠、硫代硫酸钠(最适浓度为2.5 mmol/L)为唯一碳源进行自养生长。最适生长温度为25°C 30°C,最适pH为6.0 8.0。菌株MU2A-22T的16S rRNA序列与菌株Paracoccus solventivorans 6637T亲缘关系最近,序列相似性为97%,编码核酮糖-1,5-二磷酸羧化酶/加氧酶(Rubisco)的基因也被确定。对Paracoccus属内几种近缘菌的脂肪酸分析,证明菌株MU2A-22T中含有Paracoccus属的特征氨基酸,其中含量大于10%的分别为C18:1(74.7%)和C18:0(12.1%)。DNA-DNA杂交实验表明,菌株MU2A-22T与Paracoccus solventivorans 6637TDNA的相似度为49.3%。MU2A-22T菌株G+C含量为66.5%66.7%。【结论】菌株MU2A-22T为Paracoccus属内的一新种菌(登录号GQ452286),命名为Paracoccus scorialis sp.nov.。     

可降解吡啶的全食副球菌B21-3的筛选鉴定及降解特性

【背景】吡啶作为一种难降解的有机污染物普遍存在于焦化、炼油、皮革和制药等行业的废水中,并对环境造成危害。【目的】治理废水中残留的有机污染物吡啶,筛选高效降解菌。【方法】采用富集培养和选择培养,以石家庄某污水处理厂的活性污泥为材料进行吡啶降解菌的筛选,通过形态特征、生理生化特性、(G+C)mol%测定及16S rRNA基因序列系统发育分析对筛选到的降解菌进行鉴定,并分析其对吡啶的降解特性。【结果】分离筛选到一株能以吡啶为唯一碳源和氮源生长代谢的降解菌B21-3,经鉴定该菌株为全食副球菌(Paracoccuspantotrophus)。菌株B21-3对吡啶的最适降解温度为32°C,最适降解pH为7.0,吡啶浓度为100mg/L时降解率为48.50%±0.02%;通过逐步提高吡啶初始浓度对菌株进行驯化,驯化后菌株可耐受较高浓度吡啶且吡啶降解率显著增加,吡啶浓度为100 mg/L时驯化后菌株B21-3对吡啶的降解率为90.26%±1.70%。驯化后菌株在含吡啶的无机盐平板上传代培养15代后,对吡啶的降解率为89.39%±2.03%。【结论】菌株B21-3具有较强的吡啶降解能力及降解稳定性,该菌株可作为吡啶污染水体生物修复的潜在资源。     

Biodegradation of Isopropanol by a Solvent-Tolerant Paracoccus denitrificans Strain

The biodegradation of high concentration isopropanol (2-propanol, IPA) at 16 g/L was investigated by a solvent-tolerant strain of bacteria identified as Paracoccus denitrificans for the first time by 16S rDNA gene sequencing. The strain P. denitrificans GH3 was able to utilize the high concentration of IPA as the sole carbon source within a minimal salts medium with a cell density of 1.5 × 10⁸ cells/mL. The optimal conditions were found as follows: initial pH 7.0, incubation temperature 30°C, with IPA concentration 8 g/L. Under the optimal conditions, strain GH3 utilized 90.3% of IPA in 7 days. Acetone, the major intermediate of aerobic IPA biodegradation, was also monitored as an indicator of microbial IPA utilization. Both IPA and acetone were completely removed from the medium following 216 hr and 240 hr, respectively. The growth of strain GH3 on IPA as a sole carbon and energy source was well described by the Andrews model with a maximum growth rate (μ _max ) = 0.0277/hr, a saturation constant (K _S ) = 0.7333 g/L, and an inhibition concentration (Ki) = 8.9887 g/L. Paracoccus denitrificans GH3 is considered to be well used in degrading IPA in wastewater.     

Isolation and identification of Paracoccus sp. FD3 and evaluation of its formaldehyde degradation kinetics

A formaldehyde-degrading bacterium strain, FD3, was isolated from contaminated soil and identified as Paracoccus sp. based on partial 16S rRNA gene sequence analysis. In batch culture, the bacterium metabolized 5,000 and 8,000 mg/L formaldehyde completely within 16 and 18 h, respectively, at 30°C (pH 7.0) with agitation at 150 rpm. The degradation kinetics was found to follow a first-order model at all initial formaldehyde concentrations with regression values greater than 0.99. Formaldehyde degradation rates increased from 532.37 to 2283.04 mg/L/h as the initial concentration of formaldehyde was increased from 1,000 to 8,000 mg/L. The growth of strain FD3 on formaldehyde as a sole carbon and energy source was well described by the Luong model with a maximal specific growth rate of 0.1754/h, a half-saturation constant of 309.02 mg/L, and a maximum substrate concentration of 3875.53 mg/L. Due to its high tolerance and degradation capacity to formaldehyde, Paracoccus sp., FD3 is considered an excellent candidate for use in degrading formaldehyde in wastewaters.     

抗锌细菌Sphingomonas sp. DX-T3-03分离、鉴定及性质

从江西德兴铜矿重金属污染土壤中筛选得到一株对重金属锌具有极强抗性的菌株,命名为DX-T3-03。对该菌株进行形态观察、生理生化试验,采用16S rRNA序列分析,鉴定该菌为鞘氨醇单胞菌属(Sphingomonas sp.)。研究其最佳生长条件及抗重金属特性。试验结果表明:该菌株的最适应生长条件为温度35°C,pH约6.7,转速150r/min;对重金属锌有极高抗性,可以达到25mmol/L及以上,并能够在多种单一及复合重金属(Cu70mg/L、Cd300mg/L、Pb400mg/L、Ni60mg/L)中生长。