基于线粒体COI基因序列的文蛤属（软体动物门：帘蛤科）系统发育关系

测定了4种文蛤属贝类的15个个体的COI基因序列,并从GenBank下载了短文蛤(M petechialis)的相应序列.比对后的序列长度为574bp,包括93个简约信息位点,A、T、C和G的平均含量分别为21.15%、44.71%、14.05%和20.09%.通过对序列的分析,共定义了12个单倍型:文蛤(M.meretrix)4个,斧文蛤(M.lamarckii)2个,丽文蛤(M.lusoria)3个,琴文蛤(M.lyrata)1个,短文蛤2个.以青蛤(cylina sinensis)为外群,用MP法和贝叶斯法构建系统树.结果显示,短文蛤、丽文蛤和文蛤为亲缘关系较近的物种,支持短文蛤和丽文蛤为文蛤的同物异名的观点.     

黑龙江省蹄盖蕨科(Athyriaceae)植物的RAPD分析及其系统学意义

在形态分类研究的基础上,利用RAPD技术,对黑龙江省蹄盖蕨科植物6属9种共15个种群进行了遗传多样性分析,分析结果表明：（1）假冷蕨属应包括在蹄盖蕨属中（2）角蕨属与蹄盖蕨属,羽节蕨属与冷蕨属亲源关系较近（3）短肠蕨属为独立一属,与其它属亲源关系较远。根据黑龙江省蹄盖蕨科植物的DNA水平的研究结果,再结合其形态学特征,建议将黑龙江省蹄盖蕨科划分为3个亚科：冷蕨亚科(Cystopterioideae)包括2个属：冷蕨属(Cystopteris)和羽节蕨属(Gymnocarpium)。蹄盖蕨亚科(Athyrioideae)包括3个属：蹄盖蕨属(Athyrium)、假冷蕨属(Pseudocystopteris)和角蕨属(Cornopteris)。双盖蕨亚科(Diplazioideae)包括短肠蕨属(Allantodia)。     

蒙古栎群落交错带(ecotone)的研究

通过群落学的样地法对蒙古栎(Quercus mongolica)群落和核桃楸(Juglans mandshurica)群落、蒙古栎群落和长白落叶松(Larix olgensis)群落、蒙古栎群落和杂灌丛群落及其交错带进行了研究,分析了在三个地点的几种群落结构和物种组成方面的差异,计算了各群落的物种丰富度指数(d_Gl)、Simpson 物种多样性指数(D)、Shannon-Weiner物种多样性指数(H′)及Pielou均匀度指数(J)。研究发现在通化和大青沟两个地区群落交错带的物种丰富度及Shannnon多样性指数最高;而在桦甸群落交错带的物种丰富度和物种多样性指数要比核桃楸群落低,比蒙古栎群落高,没有表现出特别强烈的边缘效应。本文也分析了群落乔木层、灌木层和草本层盖度之间的关系。     

新疆罗布泊地区可培养嗜盐细菌多样性

采用纯培养方法从新疆罗布泊盐湖中分离得到168株嗜盐细菌, 采用核糖体DNA扩增片段限制性酶切分析(ARDRA)研究了罗布泊嗜盐细菌的群落结构和多样性。通过限制性内切酶HinfI对108个菌株的16S rDNA进行酶切分型, 根据ARDRA的酶切图谱, 将其划分为12个操作分类单元。16S rDNA序列测定和系统发育分析结果显示, 分离菌株分布于喜盐芽孢杆菌属(Halobacillus)、芽孢杆菌属(Bacillus)、短杆菌属(Brevibacterium)、嗜盐单胞菌属(Halomonas)、色盐杆菌属(Chromohalobacter)、盐水球菌属(Salinicoccus)、库克菌属(Kocuria)、葡萄球菌属(Staphylococcus)、微球菌属(Micrococcus)等9个属及1个可能的新分类单元。其中Halomonas为优势菌群, Chromohalobacter、Halobacillus为次优势菌群。采用ERIC-PCR分析优势菌群Halomonas各菌株的基因组特征, 显示出有21种指纹图谱。研究结果揭示, 罗布泊嗜盐细菌不仅具有丰富的多样性, 还蕴藏着具有地域特点的新菌种资源。     

思茅地区咖啡天牛天敌的多样性调查和控制评价

作者在1994～1997年的调查研究中发现思茅地区拥有丰富的天敌资源。共鉴定出8种主要捕食和寄生于咖啡天牛的天敌,其中蚂蚁类4种：立毛举腹蚁(Crematogaster ferrarii)、黑褐举腹蚁(C.rogenhoferi)、中华小家蚁(Monomorium chinense )和法老家蚁(M.pharaonis );蠼螋2种：蠼螋(Labidura riparia)、锤角螋(Nesogaster sp.);寄生蜂2 种：间斑举腹姬蜂(Pristaulacus intermedius)和茶色茧蜂(Iphiaulax rufus)。饲养和调查结果显示,黑褐举腹蚁、立毛举腹蚁、间斑举腹姬蜂和蠼螋4种捕食或寄生性天敌,自然种群大、控制能力强,有很大的利用前景。建议生产中减少化学农药的施用,以保护天敌的生存环境,发挥天敌的自然控制作用。     

短柄枹种群遗传多样性的ISSR分析

利用ISSR分子标记方法对分布在浙江省境内的7个短柄枹种群的遗传多样性和遗传分化进行了分析。从100个引物中筛选出12个用于正式扩增的ISSR引物,在7个种群140个个体中共检测到132个位点,其中多态位点118个,多态位点百分率(P)为89.39%,各种群P平均为58.87%。短柄枹总的Shannon信息指数(I)为0.493 3、Nei指数(h)为0.334 7,各种群I平均为0.336 2、h平均为0.229 1。P、I、h均显示云峰种群最高,天台山种群最低。AMOVA分子差异分析表明,67.97%的变异存在于种群内,32.03%的变异存在于种群间,种群间的基因分化系数(G_ST)为0.315 4。短柄枹种群间的基因流为(N_m)为1.085 3。7个种群的平均遗传距离为0.173 9。利用UPGMA法对7个种群进行聚类,结果显示天台山和雪窦山种群聚成一类,其它5个种群聚成另一类。     

荒漠生境油蒿根围AM真菌多样性

为了阐明荒漠生境主要植被油蒿(Artemisia ordosica)根围AM真菌多样性, 2007年8月从毛乌素沙地和腾格里沙漠选取榆林、盐池、研究站和沙坡头4个样地, 按0–10、10–20、20–30、30–40、40–50 cm 5个土层采集油蒿根围土壤样品, 研究了油蒿根围AM真菌物种多样性和生态分布。在分离的4属28种AM真菌中, 球囊霉属(Glomus)16种, 无梗囊霉属(Acaulospora)7种, 盾巨孢囊霉属(Scutellospora)4种, 多孢囊霉属(Diversispora)1种。4个样地的共同优势种为摩西球囊霉(G. mosseae), 共同常见种为双网无梗囊霉(A. bireticulata)和网状球囊霉(G. reticulatum), 共同稀有种为缩球囊霉(G. constrictum)。地球囊霉(G. geosporum)仅出现在盐池, 蜜色无梗囊霉(A. mellea)、帚状球囊霉(G. coremioides)、浅窝无梗囊霉(A. lacunosa)和宽柄球囊霉(G. magnicaule)仅出现在研究站, 黑球囊霉(G. melanosporum)仅出现在榆林。盐池与研究站样地AM真菌种类最多, 榆林样地孢子密度最大, 沙坡头样地种类和孢子密度显著偏低。总体上, 孢子密度、分离频度、相对多度和重要值依Glomus >Acaulospora > Scutellospora> Diversispora呈现显著减小趋势。结果表明, 油蒿与AM真菌之间有良好共生性, 这对进一步利用菌根生物技术维护荒漠生态系统结构的完整性具有重要意义。     

栝楼属基于核糖体ITS序列的系统发育分析

栝楼属（Trichosanthes）是葫芦科(Cucurbitaceae)中一个种类较多、药用价值较大的属。本文基于ITS序列分析了栝楼属16个种的系统发育关系。聚类分析表明：在组的划分上,具有分类争议的截叶组(sect. Truncata)与大苞组(sect. Involucraria)形成一大支,处于一亚分枝位置,不支持独立成组。在属内分类地位上,在核酸水平不支持贵州栝楼(T.guizhouensis)为一独立种,结合形态特征建议并入双边栝楼(T.rosthornii)。大方油栝楼(T.dafangensis)与小苞组(sect. Trichosanthes)成为姊妹群,处于一个向叶苞组(sect. Foliobracteola)过渡位置,结合其形态特征,建议作为小苞组(sect. Trichosanthes)成员。     

西部地区动物资源现状及持续发展对策

中国西部地区包括陕西、 宁夏、 青海、 新疆、 西藏和内蒙古西部, 其总面积占国土总面积的46.52％,人口占全国总人口的8.33％。共有陆生脊椎动物1273种,占国内2414种的52.73％。其中：两栖类81种,占国内两栖类的28.52％;爬行类119种,占34.69%;鸟类781种,占62.83％;兽类292种,占53.66%。有259种仅分布在西部地区,占西部地区陆栖脊椎动物种数的20.35％,我国大型有蹄类几乎全部集中在西部地区。这里有国家保护的陆栖脊椎动物174种,占全国333种的52.25％; 我国特有鸟、兽54种,占国内特有鸟、兽的60.67%。西部地区丰富的动物资源蕴藏着巨大的经济价值、科学研究价值和生态效益。因环境破坏,乱捕滥猎,近一个世纪以来确知已有普氏野马(Equus przewalskii)、高鼻羚羊(Saiga tatarica)、虎(Panthera tigris)和灰冠鸦雀(Paradoxornis przewalskii)4个物种在西部地区消失。朱(Napponia nippon)已成为极危种类,大熊猫(Ailuropoda melanoleuca)、普氏原羚(Procapra przewalskii)也已接近极危种的界限。一些主要经济动物种群数量逐年下降,马麝(Moschus sifanicus)和林麝(M. berezovskii)分别以年均8.97％和8.44％的速率下降(n=12)。马鹿(Cervus elaphus),白唇鹿(C. albirostris),野牦牛(Bos gruniens)、野驴(Asinus spp.)、藏原羚(Procapra picticaudata)、藏羚（Pantholops hodgsoni)、岩羊(Psendois nayaur)、鹅喉羚(Gazella subgutturosa)等大中型有蹄类遭大肆捕杀。1963年以后得以休养生息正在恢复的动物资源再次遭到破坏。有的种类,如盘羊(Ovis ammon)、野骆驼(Camelus ferus)种群数量分别以年10.06%和10.89％的速率增加(n=16)。为达到持续利用的目的,本文提出六项持续发展对策：加强自然保护区建设、管理;建立各省、自治区自然保护基金;保护栖息环境;迁地保护珍稀濒危物种;人工复壮孤隔种群;提倡人工驯养野生经济动物;人为扩大某些珍稀和经济动物分布区。     

新疆赖草属(Poaceae)两个新变种

报道了新疆赖草属2个新变种,即北疆赖草(Leymus tianschanicus (Drob.) Tzvel. var. borealus L. B. Cai)和短穗赖草(Leymus angustus (Trin.) Pilger var. brevistachyus L. B. Cai)。     

基于线粒体细胞色素c氧化酶亚基I基因序列的帘蛤科贝类分子系统发育研究

对21种帘蛤科贝类线粒体细胞色素c氧化酶亚基Ⅰ(cytochrome c oxidase subunit I,COI)基因核苷酸序列进行了分析,以探讨这一序列在种质鉴定、分子系统发生研究中的应用价值。测序结果表明,所有物种扩增片段长度均为707 bp(含引物),序列A+T含量(62.4%—67.8%)明显高于G+C含量。物种间共有变异位点379个,其中简约信息位点334个;此区段共编码235个氨基酸,种间共有氨基酸变异位点100个。以COI基因片段序列为标记,用中国蛤蜊(Mactra chinensis)作外群,构建了35种帘蛤科贝类(其中14种贝类COI序列从GenBank下载)的系统发生树,结合拓扑结构分析和序列比对分析,结果表明:支持将短文蛤(Meretrix petechinalis)和丽文蛤(M.lusoria)订为文蛤(M.meretrix)的同物异名的观点,建议将丽文蛤和短文蛤订为文蛤的地理亚种;支持将薄片镜蛤(Dosinia corrugata)和D.angulosa订为2个独立种的观点;认为将波纹巴非蛤(Paphia undulata)和织锦巴非蛤(P.textile)订为2个独立种是合适的。COI基因序列含有丰富的遗传信息,适合作为帘蛤科贝类种群遗传结构和系统发生研究的分子标记。     

The complete mitochondrial genome of the hard clam <Emphasis Type="Italic">Meretrix meretrix</Emphasis>

Veneridae is a diverse, commercially important, and cosmopolitan family. Here we present the complete mitochondrial genome of the hard clam Meretrix meretrix (Bivalvia: Veneridae). The entire mitochondrial genome (mitogenome) sequence of M. meretrix is 19,826 bp in length, and contains 37 genes including 12 protein-coding genes, 2 ribosomal RNAs, and 23 tRNAs. All genes are encoded on the heavy strand. In contrast to the typical animal mitochondrial genome, it lacks the protein-coding gene ATP8, and has only one copy of the tRNA^Ser gene, but three duplications of the tRNA^Gln, which is the first report among the present molluscan mtDNAs. We observed that the gene arrangement between M. meretrix and M. petechialis is same except one more tRNAGln gene in M. meretrix., and the sequence similarity is as high as 99%, indicating that M. petechialis and M. meretrix could be treated as a junior synonym of M. meretrix. Maximum Likelihood and Bayeslan analysis of 12 concatenated protein-coding amino acid sequences place the Unionidae as a sister group to other bivalves, which reflects the general opinion that the Unionidae deverged very early in Bivalvia evolution.     

不同地理种群银杏大蚕蛾COI基因序列变异与遗传分化

银杏大蚕蛾Caligula japonica是亚洲东部的特有种, 既是一种重要的林业害虫, 也是一种珍贵的野生蚕类资源。为了揭示银杏大蚕蛾地理种群间的内在联系, 测定了我国分布的12个地理种群的线粒体细胞色素氧化酶C亚基I（COI）基因部分序列（GenBank登录号: FJ358506-FJ358517）, 对地理种群间的序列变异和遗传分化进行了分析。结果表明: 银杏大蚕蛾地理种群间的COI序列同源性高达99%~100%, 显示出比较小的遗传差异。序列对准后从供试COI序列中仅鉴定出9个变异位点和6个单元型, 其中3种是共享单元型。系统发育分析结果表明种群间已经按地理位置形成了一定的地理格局, AMOVA分析显示北方组和南方组之间已经具有明显的遗传分化（FST=0.478, P<0.001）。综合分析, 我们认为北方组和南方组之间的遗传分化可能与差异巨大的生态条件有关。研究结果为银杏大蚕蛾的种群遗传学和生态学研究提供了一个基本的分子生物学线索。     

基于rDNA ITS1和ITS2序列的褐飞虱、白背飞虱和灰飞虱的分子鉴定

本研究测定了褐飞虱Nilaparvata lugens、白背飞虱Sogatella furcifera和灰飞虱Laodelphax striatellus的rDNA ITS1和ITS2的序列, 以探讨这3种稻飞虱的分子鉴定方法。3种飞虱的ITS1和ITS2侧翼区（18S, 5.8S和28S）序列相对稳定, 但ITS1和ITS2序列在3种飞虱中变异较大。 ITS1在所分析的438个位点中可变位点达294个, ITS2在分析的403个位点中可变位点为177个。根据3种飞虱rDNA的ITS1和ITS2序列设计了特异性引物, 应用特异性引物对样品进行了PCR扩增, 分析发现3种飞虱ITS1区的特异性引物扩增效果不理想, 而ITS2区的特异性引物可以稳定地扩增出明显的目的DNA条带. 因此, 采用ITS2区的特异性引物可以对3种飞虱进行快速的分子鉴定。     

Climate Change and the Distribution of Neotropical Red-Bellied Toads (Melanophryniscus,Anura, Amphibia): How to Prioritize Species and Populations?

We used species distribution modeling to investigate the potential effects of climate change on 24 species of Neotropical anurans of the genus Melanophryniscus. These toads are small, have limited mobility, and a high percentage are endangered or present restricted geographical distributions. We looked at the changes in the size of suitable climatic regions and in the numbers of known occurrence sites within the distribution limits of all species. We used the MaxEnt algorithm to project current and future suitable climatic areas (a consensus of IPCC scenarios A2a and B2a for 2020 and 2080) for each species. 40% of the species may lose over 50% of their potential distribution area by 2080, whereas 28% of species may lose less than 10%. Four species had over 40% of the currently known occurrence sites outside the predicted 2080 areas. The effect of climate change (decrease in climatic suitable areas) did not differ according to the present distribution area, major habitat type or phylogenetic group of the studied species. We used the estimated decrease in specific suitable climatic range to set a conservation priority rank for Melanophryniscus species. Four species were set to high conservation priority: M. montevidensis, (100% of its original suitable range and all known occurrence points potentially lost by 2080), M. sp.2, M. cambaraensis, and M. tumifrons. Three species (M. spectabilis, M. stelzneri, and M. sp.3) were set between high to intermediate priority (more than 60% decrease in area predicted by 2080); nine species were ranked as intermediate priority, while eight species were ranked as low conservation priority. We suggest that monitoring and conservation actions should be focused primarily on those species and populations that are likely to lose the largest area of suitable climate and the largest number of known populations in the short-term.     

Characterization and physical mapping of ribosomal RNA gene families in Plantago

• Background and Aims The organization of rRNA genes incultivated Plantago ovata Forsk. and several of its wild allieswas analysed to gain insight into the phylogenetic relationshipsof these species in the genus which includes some 200 species. • Methods Specific primers were designed to amplify theinternal transcribed spacer (ITS1 and ITS2) regions from sevenPlantago species and the resulting fragments were cloned andsequenced. Similarly, using specific primers, the 5S rRNA genesfrom these species were amplified and subsequently cloned. Fluorescencein-situ hybridization (FISH) was used for physical mapping of5S and 45S ribosomal RNA genes. • Results The ITS1 region is 19–29 bp longer thanthe ITS2 in different Plantago species. The 5S rRNA gene-repeatingunit varies in length from 289 to 581 bp. Coding regions arehighly conserved across species, but the non-transcribed spacers(NTS) do not match any database sequences. The clone from thecultivated species P. ovata was used for physical mapping ofthese genes by FISH. Four species have one FISH site while threehave two FISH sites. In P. lanceolata and P. rhodosperma, the5S and 45S (18S-5·8S-25S) sites are coupled. • Conclusions Characterization of 5S and 45S rRNA geneshas indicated a possible origin of P. ovata, the only cultivatedspecies of the genus and also the only species with x = 4, froma species belonging to subgenus Psyllium. Based on the studiesreported here, P. ovata is closest to P. arenaria, althoughon the basis of other data the two species have been placedin different subgenera. FISH mapping can be used as an efficienttool to help determine phylogenetic relationships in the genusPlantago and show the interrelationship between P. lanceolataand P. lagopus.     

Nucleotide Sequences of Genes Coding for Photosynthetic Reaction Centers and Light-Harvesting Proteins of Acidiphilium rubrum and Related Aerobic Acidophilic Bacteria

The nucleotide sequences of the puf operons of the Zn-bacteriochlorophylla(Zn-BChl a)-containing photosynthetic aerobic bacteria, Acidiphiliumrubrum and Acidiphilium angustum, were determined. The nucleotidesequences of the pufL and –M of Acidiphilium cryptum,Acidiphilium multivorum, and Acidiphilium organovorum were alsodetermined. The puf operons of A. rubrum and A. angustum containedpufB, –A,–L, –M, and –C as seen in otherpurple bacteria with an unknown gene directly upstream of pufB.Comparing the deduced amino acid sequences of the puf genesof the Acidiphilium species with those of other purple bacteriashowed that His L168, which is highly conserved in other bacteria,is replaced by a glu-tamic acid in the Acidiphilium species.The three-dimensional structures of the reaction centers ofBlastochloris (Rhodopseudomonas) viridis and Rhodobacter sphaeroidessuggest that this residue locates closely to a special pairof bacteriochlorophylls and may be involved in the stabilizationand function of "Zn-BChl a". The relative content of chargedamino acid residues in the L and M subunit is a little lowerin A. rubrum (10%of total) than in B. viridis (12%), and thetendency is more pronounced in the cyto-chrome subunit: 12.5%in A. rubrum and 18.8% in B. viridis. (Received July 24, 1997; Accepted September 9, 1997)     

A Comparison of the Growth, Photosynthesis, Stomatal Conductance and Water Use Efficiency of Moricandia and Brassica Species

When grown in pots and well-watered, the relative growth ratesof the above ground parts of two species of Moricandia (M. arvensis,an intermediate C₃–C₄ species, and M. moricandioides,a C₃ species) were inferior to those of two cultivated Brassicaspecies (B. campestris and B. napus). The Moricandia specieshad thicker leaves (greater d.wt per unit leaf area) with morechlorophyll than the Brassica species and had slightly greaterrates of photosynthesis per unit leaf area at an irradiance(400–700 nm) of 2000 µmol quanta m^–2 s ^–1.Leaves of M. arvensis, known to have a CO₂ compensation pointbetween that of C₃ and C₄ species, had a lower ratio of theintercellular to atmospheric partial pressure of CO₂ (C₁/C_a)and a greater instantaneous water use efficiency (WUE) thanthose of M. moricandioides and the Brassica species. Carbon isotope discrimination (