Isolation and characterization of 16 tetranucleotide microsatellite loci in the red panda (Ailurus fulgens)

A total of 15 polymorphic tetranucleotide microsatellite loci in the red panda, Ailurus fulgens, were characterized in this study. Based on evaluations of 33 red pandas, the number of observed alleles for each locus ranged from seven to 17 and the expected and observed heterozygosities were 0.412–0.897 and 0.121–0.909, respectively. The mean polymorphic information content was 0.721. These markers would greatly strengthen the utilization of microsatellite tools in genetic variation studies in red panda populations.     

A study on giant panda recognition based on images of a large proportion of captive pandas

1. As a highly endangered species, the giant panda (panda) has attracted significant attention in the past decades. Considerable efforts have been put on panda conservation and reproduction, offering the promising outcome of maintaining the population size of pandas. To evaluate the effectiveness of conservation and management strategies, recognizing individual pandas is critical. However, it remains a challenging task because the existing methods, such as traditional tracking method, discrimination method based on footprint identification, and molecular biology method, are invasive, inaccurate, expensive, or challenging to perform. The advances of imaging technologies have led to the wide applications of digital images and videos in panda conservation and management, which makes it possible for individual panda recognition in a noninvasive manner by using image‐based panda face recognition method.
2. In recent years, deep learning has achieved great success in the field of computer vision and pattern recognition. For panda face recognition, a fully automatic deep learning algorithm which consists of a sequence of deep neural networks (DNNs) used for panda face detection, segmentation, alignment, and identity prediction is developed in this study. To develop and evaluate the algorithm, the largest panda image dataset containing 6,441 images from 218 different pandas, which is 39.78% of captive pandas in the world, is established.
3. The algorithm achieved 96.27% accuracy in panda recognition and 100% accuracy in detection.
4. This study shows that panda faces can be used for panda recognition. It enables the use of the cameras installed in their habitat for monitoring their population and behavior. This noninvasive approach is much more cost‐effective than the approaches used in the previous panda surveys.

     

Nucleotide Sequences of an Important Functional Gene hnRNPA2/B1 from Ailuropoda melanoleuca and Ursus thibetanus mupinensis and Its Potential Value in Phylogenetic Study

The cDNA fragments of hnRNPA2/B1 were cloned from the giant panda and black bear using RT-PCR method, which were, respectively, 1029bp and 1026bp in length encoding 343 and 341 amino acids. Analysis indicated the cDNA cloned from the giant panda encoded variant B1 while the cDNA cloned from black bear encoded variant A2.

Analyzing the hnRNPA2B1 peptide of the giant panda and black bear, 76 glycine residues and 86 glycine residues were, respectively, found, and moreover, most glycine are concentrated in the latter halves of the hnRNPA2B1 peptides. Functional sites prediction also showed many N-myristoylation sites existed in the glycine-rich domain, which is probably related to the role of telomere maintenance.

From base bias and substitution analysis, we can conclude that the ORF of hnRNPA2/B1 biased G while hated C, and transition of the third site did not achieve the level of saturation.

Orthology analysis indicated that both the nucleotide sequence and the deduced amino acid sequence showed high identity to other 26 hnRNPA2/B1 sequences from mammals and nonmammals reported. These sequences were used to construct phylogenetic trees employing the NJ method with 1000 bootstrap, and the obtained tree demonstrated similar topology with the classical systematics, which suggested the potential value of hnRNPA2/B1 in phylogenetic analysis.

This report will be the first step to the study function of hnRNPA2/B1 in the giant panda and black bear, and will provide a scientific basis to disease surveillance, captive breeding, and conservation of the endangered species.     

微卫星标记在大熊猫研究中的应用进展

大熊猫是我国保护最为成功、研究最为深入的珍稀动物之一,可以为其它珍稀濒危物种的保护研究工作提供参考。20世纪70年代末期借助无线电颈圈,大熊猫的生态学研究工作取得了突破性进展,近20年来微卫星标记和非损伤性遗传取样技术的联合使用,将大熊猫的保护研究工作提升到一个崭新的高度。本文在综合所有已发表大熊猫微卫星标记的基础上,梳理了微卫星标记在圈养大熊猫亲子鉴定与遗传管理,野生大熊猫个体识别与种群数量调查、遗传多样性评估、扩散和种群遗传结构研究中的应用情况,并着重介绍了其中29个重要的微卫星标记。同时指出目前微卫星标记的使用存在标记选择不统一、等位基因读数无统一规程等问题,并对应用前景进行了前瞻。     

道路影响下野生动物廊道的选址——以大熊猫保护廊道为例

沿道路设置供野生动物迁徙、扩散和连接栖息地的廊道是应对道路干扰最有效的措施,科学选址则是野生动物廊道建设的前提,也是廊道研究的薄弱领域。以大熊猫廊道为例对野生动物廊道选址指标体系、方法和程序进行了探索,将栖息地特征、地形因素、植被可转化性、工程成本作为大熊猫廊道选址指标,基于Arcgis和栖息地格局、海拔、坡度、植被数据,为四川306省道椅子垭口段确定了两处大熊猫廊道位置,并用监测数据证明了所选位置具有较大的可行性和准确性。研究表明栖息地格局是廊道选址的重要基础,应侧重对地形因素的研究。研究为廊道选址方法和流程进行了示范,还对选址指标体系优化、提高选址的科学性进行了探讨,有助于推动野生动物廊道研究从理论探索走向实际应用。     

大熊猫取食竹笋期间的昼夜活动节律和强度

采用内置记录活动水平传感器的GPS项圈研究了卧龙自然保护区3只野生大熊猫春季取食竹笋期间的昼夜活动节律和强度,并分析了太阳辐射、温度因子对大熊猫活动节律与强度的影响。3只大熊猫的平均活动率为68.05%,受孕雌性大熊猫的活动率(70.86%)和活动强度(范围:0-255;水平方向/垂直方向,23.82±0.30/ 17.63±0.22)均比其它两只大熊猫(70.55%, 14.71±0.17/13.52±0.15 ;62.76%,17.74±0.23/13.61±0.18)高。大熊猫有3次活动高峰,分别出现在6:00-7:00,18:00-21:00和23:00-3:00,一个明显的活动低谷,出现在9:00-12:00。大熊猫白天的活动率(68.32%)和活动强度(19.59±0.20/ 15.45±0.15)比夜间(67.67%,17.63±0.19/14.21±0.15)高。大熊猫的活动强度与太阳辐射之间存在显著负相关(r=-0.822, P<0.001),与空气温度之间不存在显著的相关性。     

Nature reserve group planning for conservation of giant pandas in North Minshan, China

Formation of nature reserve groups (NRGs) is an important approach for optimising spatial patterns in nature reserves and for improving the efficiency of nature reserve networks. In this study, based on habitat evaluation and connectivity analysis, the approach and method for optimising spatial patterns and functional zoning of reserves were analysed using the case study of giant panda (Ailuropoda melanoleuca) reserves in North Minshan. Results indicated that five panda nature reserves had been established, which formed a reserve group and covered 48.4% of panda habitat and three of five population components. Although the nature reserves were connected to each other, core zones were divided into seven isolated areas. These divisions can reduce the efficiency of protecting giant pandas in reserve systems. To optimise spatial patterns in nature reserves, one new reserve is proposed and it is recommended that core zones be expanded and merged into two areas, in accordance with the spatial distribution of the panda population. Three linkage areas are also proposed—for facilitating panda exchange and movement among different populations. The study is expected to provide a scientific basis for planning the development of nature reserves in this mountain range, to promote the establishment of nature reserve groups in other areas, and to optimise entire nature reserve systems in China.     

大熊猫国家公园四川片区自然保护地空间关系对大熊猫分布的影响

理清自然保护地的空间关系与分布格局是加强空间管控、整合优化自然保护地体系的基础。以大熊猫国家公园四川片区内的自然保护地为案例,基于ArcGIS空间数据的处理、分析与可视化表达等功能,结合韦恩(Venn)图在空间层面上量化分析了公园范围内各类自然保护地的空间关系,并进一步揭示了不同保护情景下大熊猫(Ailuropoda melanoleuca)的分布格局。研究结果表明:(1)研究区内含有6类自然保护地,占研究区总面积的75.13%,其中40.68%为交叉重叠区域。(2)各类自然保护地皆存在大面积的交叉重叠。自然保护区为研究区面积最大的自然保护地类型,占自然保护地总面积的72.53%,其中45.89%为交叉重叠区域;其他类自然保护地占自然保护地总面积的60.87%,其中66.48%为交叉重叠区域。(3)猫点密度与自然保护地的交叉重叠程度呈现逆向增长趋势,区域的重叠水平越高,猫点密度越低。(4)自然保护地整体非重叠区的猫点密度高于重叠区。自然保护区是整体猫点密度最高的自然保护地类型,其非重叠区密度明显高于重叠区;森林公园非重叠区与水利风景区重叠区呈现较高的猫点密度。(5)与自然保护区交叉重叠的自然保护地中,位于自然保护区的猫点密度远高于其他重叠区。由此可见,大熊猫国家公园四川片区内原有自然保护地体系体量大但空间关系复杂,不同区域间的保护效能既不平衡也不充分。建议将研究区内自然保护区的非重叠区、位于自然保护区的世界遗产地区域、森林公园的非重叠区以及水利风景区的重叠区等作为大熊猫的核心保护区,施行严格保护;将自然保护区的重叠区、世界遗产地的其他区域作为生态保育区,恢复受损退化的大熊猫栖息地及所在的自然生态系统;将其他区域作为一般控制区,在有效维护大熊猫种群及其栖息地的前提下适度开展人为活动。同时,建议对空间重叠和邻近相接的区域开展科学评估,明确自然保护地的唯一属性。另一方面,我们期待健全自然保护地管理体制,统筹自然保护地的空间布局,为以国家公园为主体的自然保护地体系建设"松体制之绑"。     

四川省大熊猫保护地生态安全及其时空演变

大熊猫是生态保护的旗舰物种,保护大熊猫及其栖息地具有重要的示范作用和科学价值。中国致力于建设以国家公园为主体的自然保护地体系,分析大熊猫保护地生态安全,为建立大熊猫国家公园提供理论依据,具有重要意义。以四川省为例,选取被划入或将来可能被划入大熊猫保护地的典型县域,构建大熊猫保护地生态安全评价指标体系,采用熵权法、层次分析法进行综合评价,并结合空间相关性分析,从时间和空间两个维度对大熊猫保护地生态安全状况进行时空动态分析。结果表明：（1）2003-2017年四川省大熊猫保护地生态安全综合指数呈波动性上升趋势,生态环境改善显著,但仍有部分县域出现不同程度的环境恶化现象。（2）各县域生态安全状况表现出较强的差异性,并且相邻县域生态安全指数存在显著的空间正相关性和空间集聚性。（3）大熊猫保护地生态安全与周边社会经济发展之间矛盾依然尖锐,相邻县域之间的经济发展和生态保护状况相互影响的作用明显,需联合治理,共同促进生态平衡,提高大熊猫及其栖息地保护效果。