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991.
992.
Shen R Meng G Ochsenbauer C Clapham PR Grams J Novak L Kappes JC Smythies LE Smith PD 《PLoS pathogens》2011,7(5):e1002060
Tissue macrophages are derived exclusively from blood monocytes, which as monocyte-derived macrophages support HIV-1 replication. However, among human tissue macrophages only intestinal macrophages are non-permissive to HIV-1, suggesting that the unique microenvironment in human intestinal mucosa renders lamina propria macrophages non-permissive to HIV-1. We investigated this hypothesis using blood monocytes and intestinal extracellular matrix (stroma)-conditioned media (S-CM) to model the exposure of newly recruited monocytes and resident macrophages to lamina propria stroma, where the cells take up residence in the intestinal mucosa. Exposure of monocytes to S-CM blocked up-regulation of CD4 and CCR5 expression during monocyte differentiation into macrophages and inhibited productive HIV-1 infection in differentiated macrophages. Importantly, exposure of monocyte-derived macrophages simultaneously to S-CM and HIV-1 also inhibited viral replication, and sorted CD4+ intestinal macrophages, a proportion of which expressed CCR5+, did not support HIV-1 replication, indicating that the non-permissiveness to HIV-1 was not due to reduced receptor expression alone. Consistent with this conclusion, S-CM also potently inhibited replication of HIV-1 pseudotyped with vesicular stomatitis virus glycoprotein, which provides CD4/CCR5-independent entry. Neutralization of TGF-β in S-CM and recombinant TGF-β studies showed that stromal TGF-β inhibited macrophage nuclear translocation of NF-κB and HIV-1 replication. Thus, the profound inability of intestinal macrophages to support productive HIV-1 infection is likely the consequence of microenvironmental down-regulation of macrophage HIV-1 receptor/coreceptor expression and NF-κB activation. 相似文献
993.
Deng Y Wong H Graham RA Liu W Shen HS Shi Y Wang L Meng M Malhi V Ding X Dean B 《Journal of chromatography. B, Analytical technologies in the biomedical and life sciences》2011,879(22):2119-2126
A rapid equilibrium dialysis (RED) assay followed by a solid phase extraction (SPE) high-performance liquid chromatography tandem mass spectrometry (LC-MS/MS) assay for the quantitative determination of unbound vismodegib in human plasma was developed and validated. The equilibrium dialysis was carried out using 0.3 mL plasma samples in the single-use plate RED system at 37°C for 6h. The dialysis samples (0.1 mL) were extracted using a Strata-X-C 33u Polymeric Strong Cation SPE plate and the resulting extracts were analyzed using reverse-phase chromatography and positive electrospray ionization (ESI) mass spectrometry. The standard curve, which ranged from 0.100 to 100 ng/mL for vismodegib, was fitted to a 1/x(2) weighted linear regression model. The lower limit of quantitation (LLOQ, 0.100 ng/mL) was sufficient to quantify unbound concentrations of vismodegib after dialysis. The intra-assay precision of the LC-MS/MS assay, based on the four analytical QC levels (LLOQ, low, medium and high), was within 7.7% CV and inter-assay precision was within 5.5% CV. The assay accuracy, expressed as %Bias, was within ±4.0% of the nominal concentration values. Extraction recovery of vismodegib was between 77.9 and 84.0%. The assay provides a means for accurate assessment of unbound vismodegib plasma concentrations in clinical studies. 相似文献
994.
Identification of genes regulating fat accumulation is important for basic and medical research; genetic screening for those genes in Caenorhabditis elegans, a widely used model organism, requires in vivo quantification of lipids. We demonstrated RNA interference screening based on quantitative imaging of lipids with label-free stimulated Raman scattering (SRS) microscopy, which overcomes major limitations of coherent anti-Stokes Raman scattering microscopy. Our screening yielded eight new genetic regulators of fat storage. 相似文献
995.
Digital image analysis of expansion growth of cultured cotton ovules with fibers and their responses to ABA 总被引:1,自引:0,他引:1
Ling Fan Meng Lü Zhi-Yong Ni Wen-Ran Hu Juan Wang 《In vitro cellular & developmental biology. Plant》2011,47(3):369-374
Cotton ovule cultures have obvious advantages over whole plants when experimental protocols call for inhibitors, radio-labeled
precursors or controlled environmental conditions to be tested. The responses of ovule expansion growth and attached fiber
elongation to external factors require accurate measurement techniques. This paper presents a new method for digital image
analysis of the growth area of cotton ovules with fibers at high resolution. The method was characterized under constant conditions
and during dynamic responses to different levels of ABA (abscisic acid) treatment. The growth area was treated as area occupied
within the outline of the Petri dish image of the growing ovule with fibers. Growth area increase showed the same trends as
fiber length increase and was significantly correlated with the fiber length increase under different levels of ABA treatment
(r
2 = 0.97). This new analysis method provides a simple, noninvasive, and more accurate approach for growth analysis in the cotton
ovule culture system. Using this method, the effects of ABA on expansion growth of ovule with fibers were characterized. 相似文献
996.
J. Y. Zhang W. J. Wang X. H. Meng J. Kong Q. Y. Wang Q. Q. Zhang 《Russian Journal of Marine Biology》2011,37(5):401-408
This study introduced a kind of new SNP genotyping strategy in genetic analysis of Chinese shrimp (Fenneropenaeus chinensis). Twenty SNP tetra-primer ARMA-PCR primer sets were validated and used to investigate the genetic structure of six selected
families of marine shrimp F. chinensis. The effective number of alleles ranged from 1.127 to 1.993, with an average value of 1.600. The average values of expected
and observed heterozygosities of the SNPs ranged from 0.505∼0.609 and 0.373∼0.487, respectively. Polymorphism information content (PIC) values ranged from 0.145 to 0.373. Among 120 population-locus cases (six populations × twenty loci), only 8 (6.7%) showed
significant deviation (P < 0.05), while the other 112 (93.3%) were in Hardy-Weinberg equilibrium (HWE) (P > 0.05). The frequencies of minor alleles ranged from 0.378 to 0.497. For the six families, the wild genotype and its allele
frequency were significantly higher than that of the mutant genotype and its allele frequency. Fifty five point forty two
percent of the population-locus showed heterozygosity. The results indicated that tetra-primer ARMA-PCR is a simple, rapid
and efficient method for SNP genotyping which make it useful in a broad aspects of F. chinensis genetic and breeding studies. 相似文献
997.
Yan G Zhang G Fang X Zhang Y Li C Ling F Cooper DN Li Q Li Y van Gool AJ Du H Chen J Chen R Zhang P Huang Z Thompson JR Meng Y Bai Y Wang J Zhuo M Wang T Huang Y Wei L Li J Wang Z Hu H Yang P Le L Stenson PD Li B Liu X Ball EV An N Huang Q Zhang Y Fan W Zhang X Li Y Wang W Katze MG Su B Nielsen R Yang H Wang J Wang X Wang J 《Nature biotechnology》2011,29(11):1019-1023
The nonhuman primates most commonly used in medical research are from the genus Macaca. To better understand the genetic differences between these animal models, we present high-quality draft genome sequences from two macaque species, the cynomolgus/crab-eating macaque and the Chinese rhesus macaque. Comparison with the previously sequenced Indian rhesus macaque reveals that all three macaques maintain abundant genetic heterogeneity, including millions of single-nucleotide substitutions and many insertions, deletions and gross chromosomal rearrangements. By assessing genetic regions with reduced variability, we identify genes in each macaque species that may have experienced positive selection. Genetic divergence patterns suggest that the cynomolgus macaque genome has been shaped by introgression after hybridization with the Chinese rhesus macaque. Macaque genes display a high degree of sequence similarity with human disease gene orthologs and drug targets. However, we identify several putatively dysfunctional genetic differences between the three macaque species, which may explain functional differences between them previously observed in clinical studies. 相似文献
998.
Knockout rats generated by embryo microinjection of TALENs 总被引:3,自引:0,他引:3
Tesson L Usal C Ménoret S Leung E Niles BJ Remy S Santiago Y Vincent AI Meng X Zhang L Gregory PD Anegon I Cost GJ 《Nature biotechnology》2011,29(8):695-696
999.
Conversion of 3-hydroxypropionate (3HP) from 1,3-propanediol (PDO) was improved by expressing dehydratase gene (dhaT) and aldehyde dehydrogenase gene (aldD) of Pseudomonas putida KT2442 under the promoter of phaCAB operon from Ralstonia eutropha H16. Expression of these genes in Aeromonas hydrophila 4AK4 produced up to 21 g/L 3HP in a fermentation process. To synthesize homopolymer poly(3-hydroxypropionate) (P3HP), and copolymer poly(3-hydroxypropionate-co-3-hydroxybutyrate) (P3HP4HB), dhaT and aldD were expressed in E. coli together with the phaC1 gene encoding polyhydroxyalkanoate (PHA) synthase gene of Ralstonia eutropha, and pcs' gene encoding the ACS domain of the tri-functional propionyl-CoA ligase (PCS) of Chloroflexus aurantiacus. Up to 92 wt% P3HP and 42 wt% P3HP4HB were produced by the recombinant Escherichia coli grown on PDO and a mixture of PDO+1,4-butanediol (BD), respectively. 相似文献
1000.
Hailin Meng Zhiguo Lu Yong Wang Xiaoning Wang Siliang Zhang 《Biotechnology and Bioprocess Engineering》2011,16(3):445-456
The heterologous biosynthesis of 6-deoxyerythronolide B (6dEB), a key intermediate in the biosynthesis of erythromycin, has recently been achieved in Escherichia coli, but the experimental product yield remains low. In this study, in silico strategies were adopted to evaluate and improve the biosynthesis of 6dEB in this strain. The theoretical capability of E. coli to produce 6dEB was first evaluated by analyzing the maximum theoretical molar yield (MTMY) of 6dEB utilizing three carbon sources, glucose, propionate and glycerol. Although propionate is presently most often used experimentally, our results indicated that glucose would be the most feasible substrate for 6dEB production from economic and long-term standpoints. Compared with Saccharomyces cerevisiae and Bacillus subtilis, E. coli was found to be a better heterologous host for the biosynthesis of 6dEB due to the higher MTMY value under the same conditions. Two strategies, including a flux distribution comparison analysis (FDCA) and linear minimization of metabolic adjustment based (LMOMA-based) methods, were proposed and employed for in silico strain improvement of 6dEB production, which yielded several potential gene targets for future experimental validation. In a further analysis, increasing the specific growth rate (SGR) or the non-growth associated maintenance (NGAM) was found to decrease the MTMY; while increasing the specific oxygen uptake rate (SOUR) or the specific carbon source uptake rate (SCUR) increased the MTMY. Taken together, our findings identified key factors directly affecting the MTMY of 6dEB production, which will guide future experimental research or even the industrial production of 6dEB. 相似文献