气候因素对狍种群遗传多样性的影响

采用聚合酶链式反应(PCR)技术分析测定了6个狍(Capreolus Pygargus)种群的分子遗传特征.遗传分析表明:狍迎春种群具有较低的单倍型多样性(H=0.622±0.138)和核苷酸多样性(π=0.386±0.00383),图强种群具有较高的单倍型多样性(H=0.857±0.044)和核苷酸多样(π=2.580±0.01914),Tajima'sD和Fu and Li'sD值检测结果表明这6个狍种群相对于中性进化的歧异度并没有明显的偏离(P>0.1);相关性分析表明:狍遗传多样性与纬度(r=0.770)和海拔(r=0.719)呈显著正相关,与年平均气温(r=-0.519)和无霜期(r=-0.652)呈显著负相关,与经度(r=-0.258)和年平均降水量(r=-0.205)呈显著的不相关.     

基于线粒体Cyt b基因的雉鸡甘肃亚种的种群遗传结构

采用聚合酶链式反应(PCR)和直接测序法分析雉鸡甘肃亚种的种群遗传结构。测序获得了8个种群79个样本的长819bp的线粒体细胞色素b(Cytb)基因序列,发现7个变异位点,界定了6种单倍型(Haplotype),其中Hap-1是共享单倍型,占79.75%。在8个种群中,除ZJC和CHX种群外,其它种群的核苷酸多样性和单倍型多样性都很低,种群间遗传分化小,基因流大。ZJC种群由于亚种间的基因渗透,导致其遗传多样性最高。CHX种群受徽成盆地周边山地的森林隔离作用,单倍型最多。分子方差分析(AMOVA)表明,遗传变异主要发生在种群内,占86.44%。种群间和地理种群组间差异不显著。地理种群组的核苷酸多样性(π)同形态上的变异规律一致。FS值检测表明,雉鸡甘肃亚种曾发生过快速扩张。     

基于线粒体16S rRNA探讨渤海海区矮拟帽贝的种群生态遗传

采用聚合酶链式反应和直接测序的方法研究了渤海海区15个矮拟帽贝Patelloida pygmaea种群遗传多样性与环境因子的关系。180个个体的16S rRNA部分序列(615 bp)共发现264个多态性位点,153个转换,114个颠换,界定32个单倍型。所有个体碱基含量依次为C(18.12%)、T(27.74%)、A(33.07%)、G(21.07%);单倍型多样性为0.835 1±0.019 1,核苷酸多样性为0.449±0.214。矮拟帽贝大陆沿岸种群核苷酸多样性(0.191 8±0.091 7)高于岛屿种群(0.107 3±0.081 6)。种群历史动态结果显示,矮拟帽贝经历了种群近期扩张。与环境因子相关性研究发现,遗传距离、序列变异、核苷酸多样性与日照时数、日照百分率分别呈显著正相关(P0.05);形态相关分析结果表明,变异主成分(壳长、壳宽)与年均降水量呈显著负相关(P0.05);年均降水量、日照时数、日照百分率是影响矮拟帽贝形态变异、遗传多样性的主导因子,环境越稳定地区种群的遗传多样性越高。     

基于线粒体控制区的序列变异分析青海东部甘肃鼢鼠遗传多样性

甘肃鼢鼠(Myospalax cansus)是一种终年营地下独居生活的小型掘土类动物。本文通过测定mt DNA的控制区部分序列(530 bp)变异,分析青海东部地区8个甘肃鼢鼠地理种群遗传多样性与遗传结构。158个样本共发现26个变异位点,定义了39种单倍型,整体的平均单倍型多样性高(h=0.953 2)、核苷酸多样性低(π=0.006 36)。歧点分布和中性检验均说明青海东部甘肃鼢鼠种群在历史上存在着快速扩张的事件。基于邻接法构建的网络关系图中,单倍型呈星状分布,没有按地理位置形成对应类群。基因流(Nm)数据显示多数地理种群间基因交流贫乏,AMOVA结果显示种群内与种群间遗传变异分别为48.82%和51.18%,遗传分化明显。IBD分析表明,甘肃鼢鼠的遗传分化与地理距离呈正相关,说明距离隔离对甘肃鼢鼠种群分化具有重要作用。甘肃鼢鼠的这种遗传多样性与种群遗传结构特点,可能是地下生活方式靠挖掘迁移带来的较小扩散能力的结果。     

环渤海红条毛肤石鳖种群遗传多样性研究

以线粒体细胞色素c氧化酶亚基Ⅰ(COⅠ)为遗传标记分析了环渤海红条毛肤石鳖Acanthochiton rubrolineatus 9个种群的遗传多样性及遗传结构。126只个体经PCR扩增测序获得654 bp的COⅠ基因序列,41个多态位点产生29种单倍型,单倍型多样性为0. 899±0. 013,核苷酸多样性为0. 013 3±0. 006 8。种群遗传多样性与纬度(r=-0. 808,P <0. 05)及年平均温度变异系数(r=-0. 795,P <0. 05)呈显著负相关,表明红条毛肤石鳖适应低纬度及温度稳定的海洋环境。分子方差分析表明,遗传变异主要发生在种群内(83. 26%,P <0. 001)。系统发生树与单倍型网络图没有呈现明显的谱系地理结构。种群历史动态结果显示,红条毛肤石鳖在早更新世晚期(第二温暖期)间冰期经历了种群扩张。     

中国南方茶棍蓟马地理种群遗传分化分析

【目的】基于mtDNA COI和COⅡ的联合序列,探讨中国南方茶棍蓟马Dendrothrips minowai地理种群的遗传多样性与遗传分化。【方法】利用MEGA 6.0, DnaSP 5.10和Arlequin 3.5.2.2等软件对中国南方茶棍蓟马8个地理种群遗传多样性、遗传分化、基因流、分子变异及地理距离与遗传距离的相关性进行分析,并推断群体演化历史。【结果】茶棍蓟马mtDNA COI和COⅡ序列均具有明显的AT偏好性,COI和COⅡ联合序列的长度为1 146 bp,共有22个单倍型。中国南方茶棍蓟马总群体遗传多样性较高,表现出高单倍型多样性(Hd=0.924)和低核苷酸多样性(π=0.00600)。8个地理种群总群体的遗传分化程度高(F_ST=0.84830),基因交流水平低(Nm=0.040),群体可能由于遗传漂变而发生明显分化。AMOVA分析显示,茶棍蓟马种群的遗传变异主要来自组间种群(F_CT=0.84922);Mantel检测显示地理距离与遗传距离存在显著的正相关(r=0.5029, P<0.01)。中性检验结果表明,除云南两个地理种群外的其他地理种群近期可能经历了种群扩张。【结论】中国南方茶棍蓟马地理种群遗传多样性较高,具有明显的遗传分化,基因交流较少;地理距离可能是影响茶棍蓟马地理种群遗传分化的主要因素之一。     

峨眉山藏酋猴mtDNA控制区序列变异及种群遗传多样性

为更有效地保护藏酋猴Macaca thibetana野生种群,本文测定了来自峨眉山藏酋猴8个亚群体的47个样品mtDNA控制区5'端505 bp的序列,发现了27个变异位点(5.74%),定义了4种单倍型,其单倍型多样性(h)为0.236±0.079、核苷酸多样性(π)为0.00902±0.00354,单倍型之间的序列差异平均为0.623%,平均核苷酸差异(K)为4.274,单倍型序列之间变异较大,种群中的核苷酸多样性较高;将峨眉山的藏酋猴看成一个种群与同为四川地区的马边群体及安徽的黄山群体的相应序列进行比较,结果显示峨眉山藏酋猴种群mtDNA控制区序列与马边群体间的差异性较小,而与黄山群体间的差异性较大。分子方差分析(AMOVA)表明,90.04%的遗传变异发生在种群之间,仅有9.96%的变异发生在种群内。进一步分析表明,藏酋猴各地理种群间均不同程度地存在着一定的遗传分化(Fst=0.9004,P<0.05),种群间基因交流较贫乏(Nm<1)。基于最大似然法和邻接法构建的系统发生树均支持四川地区的藏酋猴种群和安徽黄山种群分别聚为不同的类群,支持将它们归入各自的管理单元;而本研究中的四川地区藏酋猴在系统发生树上也分为2个亚支,但这2个亚支并未与地理分布成完全的对应关系,应归为一个管理单元加以保护。     

基于线粒体COⅡ基因序列的中华蜜蜂地理种群的遗传多样性研究

通过分析我国20个不同地理种群中蜂线粒体COⅡ序列的变异,对中华蜜蜂群体遗传分化程度遗传多样性进行全面研究。结果表明:COⅡ基因部分序列中共发现16个变异位点和18个单倍型,核苷酸差异数的平均值为0.939,核苷酸分歧度(Dxy)在0.1%~0.965%之间变化,核苷酸遗传距离为-0.007%~1.489%。总种群的Fst为0.4978,差异均极显著(P0.001)。研究结果显示种群总体单倍型多样性较为丰富,种群间核苷酸分歧度差异很大。20个东方蜜蜂不同地理种群间存在显著的遗传分化。     

云南4个地区高山姬鼠线粒体细胞色素b遗传分化的研究

基于云南昆明、中甸、丽江和剑川4个种群(n=43)的线粒体细胞色素b(Cyt b)基因全序列的遗传变异分析,探讨了该地区高山姬鼠种群的遗传分化。在1 140 bp Cyt b基因序列中,有50个变异位点(占全变异的4.38%),定义了22个单倍型。在4个种群中,昆明种群单倍型多样性和核苷酸多样性最高。分子变异分析表明,种群间的遗传变异占30.2%,种群内的遗传变异占69.8%。FST分析表明,除中甸种群和丽江种群之间差异不显著(P>0.05),其它种群间的差异均极显著(P<0.01)。22个单倍型在系统发生树中明显聚为两支(A和B),进化网络关系显示昆明种群处于进化分支最末端,推测种群进化方向可能从横断山地区到昆明地区,支持了姬鼠属从北向南扩散的理论。     

黄山短尾猴mtDNA控制区序列变异及种群的遗传多样性

短尾猴属灵长目(Primates)猴科(Cercopithecidae)猕猴属(Macaca),是我国特有的国家二级保护动物。为了更有效地保护其野生种群,本文研究了黄山短尾猴种群内的遗传多样性,并对黄山短尾猴与四川短尾猴种群间的遗传差异进行了分析。共测定了黄山短尾猴7个群体中的30个样本的mtDNA控制区5′端493bp的序列,只发现了7个变异位点,定义了3种单倍型,单倍型序列之间缺乏变异,种群中的核苷酸多样性很低(0.006);3种单倍型相应地将黄山种群分为了3个亚群,不同亚群之间呈现出一定的片断化分布,从分子水平上初步揭示了短尾猴黄山种群的遗传多样性。与四川短尾猴的相应序列比较,黄山短尾猴控制区序列存在很大差异,共有59个变异位点,而且存在大片段的碱基插入/缺失,有78%的遗传变异发生在两个种群之间,两个种群间的核苷酸歧异度已达8.21%。进一步分析表明,黄山短尾猴与四川短尾猴之间存在着极显著的遗传分化(FST=0.399,P<0.001),基于最大似然法和邻接法构建的系统发生树均将两者聚为不同的类群,支持将它们归入各自的管理单元。     

Correlation between Climatic Factors and Genetic Diversity of Phrynocephalus forsythii

Global climate change is a threat to animals in nearly all biomes and ecosystems, especially for ectotherm whose life activities highly depend on environmental thermal regime. Population genetic diversity which is essential for adaptation to environmental change is a useful index for long-term species survival. In this paper, genetic diversity of eight Phrynocephalus forsythii population which distributed in Tarim Basin, China, were evaluated based on three mtDNA gene and its correlation with environment factors were investigated using RDA. Our result revealed that, the level of genetic diversity of P. forsythii populations was related to its location but there was no significant correlation between genetic distances and geographic distances in P. forsythii. However, we find that mtDNA of P. forsythii was subjected to selection pressure during evolution and population genetic diversity was significantly positively related to variation coefficient of rainfall(VCR) and altitude(AL), while significantly negatively related to longitude(N) and annual average temperature(AAT). Our result supported the previous prediction that excessive ambient heat is a threat to P. forsythii.     

古田山国家级自然保护区白颈长尾雉的分布格局及其季节变化

为了解浙江省古田山国家级自然保护区内白颈长尾雉(Syrmaticus ellioti)的分布格局和季节变化, 2014年5月至2016年4月, 我们对其进行了为期2年的网格化监测。共有44个公里网格拍摄到白颈长尾雉, 独立探测数量为211次, 雌雄性比为1 : 1.64。白颈长尾雉主要分布在实验区和缓冲区, 其探测率在常绿落叶阔叶混交林、杉木(Cunninghamia lanceolata)林、针阔叶混交林、人工油茶(Camellia oleifera)林和常绿阔叶林中依次递减, 主要分布在海拔600-800 m。冬、春两季, 白颈长尾雉活动强度和区域相对较小, 而夏、秋两季活动强度和区域相对增加, 其分布在海拔段(F_4,12 = 3.76, P < 0.05)和季节间(F_3,12 = 3.34, P < 0.05)都存在显著差异。对海拔和气候因子进行回归分析发现, 日平均气温和海拔对白颈长尾雉是否出现均有极显著影响(P < 0.01); 白颈长尾雉月探测率和探测到白颈长尾雉位点的海拔均与月平均气温呈极显著正相关(P < 0.001), 而与月平均降水量无显著线性关系(P > 0.05)。这表明白颈长尾雉的活动在很大程度上受海拔和气温影响, 随月平均气温的升高有向高海拔迁移的趋势。模型选择和多模型推断显示, 最优模型仅保留“100 m内水源”这一个变量, 次优模型是“100 m内水源 × 海拔”, 最优和次优模型的权重分别为0.18和0.14, “100 m内水源”和“海拔”是影响白颈长尾雉在保护区内分布的重要因子, 重要值分别为0.82和0.51。因此, 白颈长尾雉的分布并非仅由某一个或几个环境变量决定, 而是由多个环境变量共同决定。气温的变化和对不同海拔段的选择是导致白颈长尾雉形成不同季节分布格局的原因。     

中国典型森林生态系统乔木层群落物种多样性的空间分布格局及其影响因素

物种多样性地理分布格局及其成因是生物地理学和宏观生态学研究的核心问题之一,基于中国13个典型森林生态系统乔木层群落植物的调查数据,分析物种多样性随经纬度的变化规律,探讨物种多样性空间分布格局的影响因素。结果表明:(1) 13个典型森林生态系统的4个物种多样性指数均随经纬度上升而下降,其中物种丰富度变化更为显著,而Shannon-Wiener指数、Simpson指数和Pielou指数随经度上升变化不显著;(2)相关性分析结果显示,物种多样性指数与植物特性、能量和水分因子的单因素相关关系并不一致。其中,物种丰富度、Shannon-Wiener指数和Simpson指数与年均温、最冷月均温、温度年较差和潜在蒸散量的相关性最显著(P0.01),Pielou指数与年均温、最冷月均温、实际蒸散量、潜在蒸散量和郁闭度有显著相关关系(P0.05);(3)方差分解结果表明,能量和水分的共同作用对物种多样性指数空间分布格局的解释率最高,达到15%—42%;植物特性、能量和水分因子三者共同作用对物种多样性指数空间分布格局解释率次之,为14%—27%;植物特性与能量因子或水分因子两者之间的共同作用以及植物特性和水分因子独立作用对物种多样性指数空间分布格局的解释率较小,其中能量因子对物种多样性指数空间分布格局的单独解释率高于植物特性或水分因子。研究表明能量和水分共同作用是影响大尺度森林乔木层物种多样性空间分布格局形成的主要因素,但植物特性的差异对物种多样性空间分布格局影响也不可忽视。     

Genetic and alkaloid analysis of Menispermum dauricum DC. by RAPD and HPLC

The aim of the present work was to determine whether dauricine could be used as a taxonomic marker for Menispermum dauricum DC., and to explore the correlation among RAPD, ecological markers and chemical markers. To this end, the chemical and genetic differences of 173 individual samples of M. dauricum from nine different sources were studied based on the relevant ecological factors including longitude, latitude, annual precipitation, mean temperature, annual accumulated temperature and mean sea level. The contents of dauricine in the sample rhizomes were assayed by HPLC with photodiode array detection. The leaves from the same sample were assayed using randomly amplified polymorphism DNA (RAPD). The genetic distances were then compared. Hierarchical cluster analysis and multiple linear stepwise regression analysis were used in the statistical analysis. The results indicated that the contents of dauricine were respectively correlated with the genetic distance (r = 1.000), longitude (r = 0.849), latitude (r = 0.861), annual precipitation (r = 0.903), mean temperature(r = 0.912), annual accumulated temperature (r = 0.919) and mean sea level (r = 0.925). It is concluded that the content of dauricine in M. dauricum is significantly correlated with genetic distance and ecological factors, and may be used as the taxonomic marker.     

RAPD-PCR analysis of genetic diversity in the Manchurian pheasant

The genetic diversity of a local population of the Manchurian pheasant Phasianus colchicus pallasi was studied using RAPD-PCR. Based on the DNA patterns obtained in PCR with five arbitrary decanucleotide primers, we assessed genetic polymorphism of this population, estimated genetic distances between individuals, and constructed an NJ phylogenetic tree, and an UPGMA dendrogram of genetic similarity. The population was shown to exhibit high average genetic polymorphism (P = 79.4%) and genetic distances (D = 0.267). Possible reasons for the high genetic diversity of this local population are discussed.     

RAPD–PCR Analysis of Genetic Diversity in the Manchurian Pheasant

The genetic diversity of a local population of the Manchurian pheasant Phasianus colchicus pallasi was studied using RAPD–PCR. Based on the DNA patterns obtained in PCR with five arbitrary decanucleotide primers, we assessed genetic polymorphism of this population, estimated genetic distances between individuals, and constructed an NJ phylogenetic tree, and an UPGMA dendrogram of genetic similarity. The population was shown to exhibit high average genetic polymorphism (P = 79.4%) and genetic distances (D = 0.267). Possible reasons for the high genetic diversity of this local population are discussed.     

Genetic variation and clonal diversity of <Emphasis Type="Italic">Bromus ircutensis</Emphasis> Kom. in the Otingdag sandy land detected by <Emphasis Type="Italic">ISSR markers</Emphasis>

Genetic variation and clonal diversity of nine populations of Bromus ircutensis Kom. from the Otingdag sandy land were investigated using Inter Simple Sequence Repeat (ISSR) markers. A total of 102 bands were amplified by using 11 ISSR primers chosen for the study. Among those 99% were polymorphic indicating high level of genetic variation at the species level with a mean genetic diversity (H) of 0.292 and Shannon information index (I) of 0.450. Percentage of polymorphic loci (PPL) of nine populations was 76.48% on average, which provides more evidence of considerable genetic variation at the population level. AMOVA analysis revealed that total genetic variation was higher within populations (87.06%) than between populations (12.94%), which is mainly the result of the extensive gene flow (Nm = 1.682) among B. ircutensis populations. UPGMA cluster analysis divided the nine populations into two groups. There was significant or moderate negative correlations between genetic diversity parameters (PPL, H, I) and longitude or latitude. Mantel test also showed a significant correlation between geographical distance and genetic distance (r = 0.681, p = 0.002). Our findings indicated that distribution of B. ircutensis populations was influenced by geographical and ecological factors. Clonal diversity was also high with 108 individuals identified by 11 ISSR primers being all of different genets. Our results provide a molecular basis for sustainable management and conservation of B. ircutensis in the study area.     

中日5个岛屿山茶种群遗传多样性研究

运用ISSR分子标记法对中、日两国5个岛屿天然山茶种群共150个个体进行遗传多样性分析。结果表明:筛选出的20条引物扩增得到205条清晰条带,其中183条为多态性条带,多态位点百分比(PPB)为89.27%。经POPGENE软件分析,山茶种群平均多态位点百分比(PPB)为72.00%,Nei’s基因多样性指数(HE)为0.2743,Shannon信息多态性指数(H)为0.4023,种群水平遗传多样性较高。基因分化系数Gst=0.2033,表明遗传变异主要存在于种群内个体间。Mantel检验(r=0.7989,P<0.05)和UPGMA聚类表明岛屿地理隔离对山茶种群遗传分化具有重要影响。基于岛屿山茶种群遗传结构的分析,建议加强我国岛屿自然种群的就地保护力度。