丁型肝炎病毒抗原的表达纯化和抗原性分析

丁型肝炎病毒(Hepatitis D virus,HDV)是一种缺陷负链RNA病毒,其表面被乙肝病毒抗原(HBsAg)所包裹,内为丁型肝炎抗原(HDAg)及其基因组RNA.HDV基因组中有多个开放读码框架(ORF),其中只有抗基因组RNA链上的一个ORF编码的蛋白与HDAg相关[1,2].     

丁型肝炎病毒的分子生物学研究进展

丁型肝炎病毒(Hepatitis delta virus,HDV)是一种缺陷病毒,必须在嗜肝DNA病毒的辅助下才能复制并组装成有感染性的病毒颗粒。其毒粒为直径35～37nm,大小介于HBV的Dane颗粒和HBsAg颗粒之间的球形颗粒。病毒颗粒外层由脂双层和HBsAg组成,内包含由HDAg和HDV RNA基因组结合组成的核蛋白体。HDV是目前所知唯一具有     

表达猪繁殖与呼吸综合征病毒GP3基因的重组伪狂犬病病毒的构建

猪繁殖与呼吸综合征 (porcinereproductiveandrespiratorysyndrome ,PRRS)是引起怀孕母猪早产、流产、死胎及仔猪呼吸系统疾病的一种新发现的病毒性传染病[1] .该病毒的基因组为单股正链RNA ,约15kb ,含有 8个开放阅读框架 (ORFs) ,ORF1编码病毒非结构蛋白 (依赖RNA的RNA聚合酶 ) ,ORF2 ORF7编码病毒的结构蛋白 .其中ORF3含有 2 6 5个氨基酸 ,编码的GP3蛋白为高度糖基化的结构蛋白 ,有 7个糖基化位点 ,具有免疫原性[2 ,3 ] .目前 ,用于预防PRRS的疫苗主要是弱毒苗和灭活苗 ,虽然都有一定的免疫效果 ,但由于PRRS抗体依赖性…     

家蚕浓核病毒DNV-3（中国株）的VD2基因组序列分析

浓核病毒BmDNV-3(中国株)基因组中含有两种不同的单链线形DNA分子(VD1,VD2)。该病毒的VD2被分离、纯化、克隆到pUC119载体上,并完成了VD2全基因组序列的测定。序列分析显示:VD2全基因组长为6022个核苷酸,末端拥有524个核苷酸反向重复序列(ITRs)。VD2基因组正链含有2个大的开放阅读框,负链含有1个小的开放阅读框。计算机分析推测该基因组正链上开放阅读框(ORF1)及负链上开放阅读框(ORF3)主要编码病毒的非结构蛋白,而正链上开放阅读框(ORF2)主要编码病毒的结构蛋白。比较BmDNV-3 VD2和BmDNV-2(Yamanashiisolate)VD2基因组全序列,两者同源性达97.7%,并且有132个碱基的替代1、1个碱基的删除和2个碱基插入。研究结果显示BmDNV-3 VD2和BmDNV-2 VD2有很近的亲缘关系,但也发生一定的变异,这为更好地理解浓核病毒种类的多样性,也为研究家蚕浓核病毒进化提供了有益的线索。     

丁型肝炎病毒分子生物学研究现状

丁型肝炎病毒(HDV)是一种缺陷性嗜肝RNA病毒,从1977年Rizzetto发现δ抗原至今,HDV的研究已取得很大进展。特别是1986年Denniston等首次将HDV cDNA克隆成功,开始了HDV分子生物学研究的新阶段,而最近利用细胞转染技术建立了有HDV基因复制与表达的细胞培养系统,使HDV分子生物学的研究更加深入。     

侵染花生的辣椒褪绿病毒S RNA全序列分析

番茄斑萎病毒属(Tospovirus)是布尼亚病毒科(Bunyaviridae)中植物病毒组成的一个属, 病毒粒子为球状,直径80～110nm,粒体外层由一层脂质包裹.基因组属于负单链RNA,由三个片段组成,分别被称为L RNA、M RNA、和S RNA.L RNA为负链、含单个开放阅读框架(ORF),M RNA和S RNA均为双义RNA, 有2个ORF,反向相连.     

一种简单高效扩增人杯状病毒ORF2区RT-PCR方法的建立及其意义

人杯状病毒(human calicivirus,HuCV)属于杯状病毒科(Caliciviridae),是单股正链RNA病毒,长约7·5 kb,其3′末端有poly(A)结构。它可分为两个属:诺如病毒(Norovirus)和札如病毒(Sapovirus)[1],根据病毒抗原性和核苷酸序列的多样性,目前将诺如病毒和札如病毒分别划分为三个遗传组(group),每一遗传组依据RNA多聚酶及衣壳蛋白区域序列的差异,可进一步划分为不同群或基因型(cluster or genotype)。病毒基因组包括3个开放读码框(open reading frame,ORF),5′端和3′端各有一个小的非编码区。ORF1编码非结构蛋白的前体聚蛋白,其中包括RNA…     

负链不分节段RNA病毒反向遗传系统中通用型真核表达载体的构建

本研究选择pVAX1作为供体载体,通过分子克隆方法,分别用人工合成的锤头型核酶、丁型肝炎核酶序列(用于获得转录后病毒基因组RNA的精确末端)和含有9个常用限制性酶切位点的linker序列(用于病毒基因组插入的多克隆酶切位点)取代真核表达载体pVAX1的多克隆酶切位点,将其改造成负链不分节段RNA病毒反向遗传系统的通用型表达载体。通过酶切鉴定和序列测定表明,pVAX1载体中插入的核酶及linker序列正确无误,并将CTN株狂犬病病毒全长基因组cDNA插入pVAX-R中,通过与辅助质粒的共转染成功拯救CTN株狂犬病毒,证明通用型真核表达载体构建成功,为快速建立负链不分节段RNA病毒反向遗传系统奠定基础。     

猪繁殖与呼吸综合征病毒华东地区分离株RT-PCR-RFLP分析

猪繁殖与呼吸综合征病毒(Porcine reproductive and respiratory syndrome virus,PRRSV)是猪的一种重要传染性疾病病原,已给世界养猪业带来了巨大的经济损失.其主要临床表现为妊娠期母猪的早产、流产、产死胎、弱胎、木乃伊胎,新生仔猪肺炎、生长迟缓.PRRSV为动脉炎病毒科动脉炎病毒属成员.病毒有囊膜、呈球形,基因组为单股正链RNA,大小约15kb,含有8个开放阅读框(ORF),其中ORF1(包括ORF1a和ORF1b)编码病毒RNA复制酶;ORF2-7分别编码病毒结构蛋白:GP2、GP3、GP4、GP5、M和N蛋白.     

云南五个不同地区烟草花叶病毒外壳蛋白基因的序列比较

烟草花叶病毒(Tobacco mosaic virus,TMV)是烟草花叶病毒属(Tobamovirus)中的典型成员,具有极广的寄主范围,可以侵染30个科的310多种植物,为单组份正链ssRNA病毒,TMV基因组RNA由6395个核苷酸组成,共有4个ORF,分别编码183kDa、126 kDa、30 kDa和17.5 kDa蛋白[1,2].     

HBsAg携带者重叠感染HCV、HDV的血清学调查

对３６２名无症状高滴度ＨＢｓＡｇ携带者用ＲＩＡ法检测ＨＢｅＡｇ、Ａｎｔｉ－ＨＢｅ、Ａｎｔｉ－ＨＣＶ、Ａｎｔｉ－ＨＤＶ。结果表明,ＨＢｅＡｇ阳性率随ＨＢｓＡｇ滴度的增高而增加,且有显著性差异（Ｐ＜０．０５）。重叠感染以ＨＢＶ＋ＨＣＶ最高,占２７．６％;其次是ＨＢＶ＋ＨＤＶ,占９．１％;ＨＢＶ＋ＨＣＶ＋ＨＤＶ最少,占６．４％。但是,以上重叠感染率均与ＨＢｓＡｇ滴度及／或ＨＢｅＡｇ阳性率高低无关（Ｐ＞０．０５）。调查显示,无症状ＨＢｓＡｇ携带者中ＨＢＶ＋ＨＣＶ,或ＨＢＶ＋ＨＤＶ,或ＨＢＶ＋ＨＣＶ＋ＨＤＶ的重叠感染均可发生。     

丁型肝炎病毒核酶的结构特点与催化作用机制

丁型肝炎病毒(HDV)核酶是小核酶的一种,在分子结构和作用机制等方面都有许多不同于其它核酶的特性。以其晶体结构的揭示为基础,近几年对其立体构型及催化机制方面的研究取得了很大进展,尤其是发现HDV核酶的胞嘧啶侧链在生理条件下能发挥一般酸碱催化作用(generalacidbasecatalysis),引起了极大关注。对HDV核酶结构和催化机制的研究,将使核酶被有目的地改造,并极大地推动它在应用方面的研究。     

病毒性肝炎HAV，HBV，HCV，HDV和HEV重叠感染的研究

采用ＥＬＩＳＡ法检测了１０８例乙型肝炎病毒（ＨＢＶ）感染者血清中的五种肝炎病毒──甲型（ＨＡＶ）、乙型（ＨＢＶ）、丙型（ＨＣＶ）、丁型（ＨＤＶ）和成型（ＨＥＶ）肝炎病毒的标志物,并采用ＰＣＲ技术检测了患者血清ＨＢＶＤＮＡ、ＨＣＶＲＮＡ及ＨＤＶＲＮＡ。结果五种肝炎病毒重叠感染者３５例（３２．４％）,单纯ＨＢＶ感染者７３例（６７．６％）。ＨＢＶ、ＨＡＶＭ重感染率为４．６％,ＨＢＶ、ＨＣＶ二重感染率为９．２％,ＨＢＶ、ＨＤＶＭ重感染率为１４．８％,ＨＢＶ、ＨＥＶ二重感染率为１．９％,ＨＢＶ、ＨＣＶ和ＨＤＶ三重感     

Initiation of RNA replication of cloned Taiwan-3 isolate of hepatitis delta virus genotype II in cultured cells

Hepatitis delta virus (HDV) genotype II is the predominant genotype in Taiwan and is associated with less progressive disease than genotype I. Although the Taiwan-3 (T3) clone was the first genotype II HDV isolated in Taiwan, its replication in cultured cells has not previously been established. Here, we demonstrate that cloned T3 HDV is capable of replicating in cultured cells. Furthermore, we show that: (1). the replication level of T3 clones is 100-fold lower than that of a genotype I HDV prototype of Italian origin; (2). both forms of the genotype II T3 delta antigen are expressed; and (3). T3 HDV undergoes RNA editing during replication, with 4.8% of the T3 genomes showing evidence of editing. The low level of RNA replication may be related to the milder clinical outcomes of genotype II HDV infections.     

Addition of an Extra Substrate Binding Site and Partial Destabilization of Stem Structures in HDV Ribozyme Give Rise to High Sequence-Specificity for its Target RNA

Because the substrate binding site (P1) of HDV ribozyme consists of only seven nucleotides, cleavage of undesired RNA is likely to occur when applied for a specific long RNA target such as mRNA. To overcome this problem, we designed modified trans-acting HDV ribozymes with an extra substrate-binding site (P5) in addition to the original binding site (P1). By inserting an additional seven base-pair stem (P5 stem) into the J1/2 single-stranded region of the ribozyme core system and partial destabilization of the P2 or P4 stem, we succeeded in preparation of new HDV ribozymes that can cleave the target RNA depending on the formation of P5 stem. Moreover, the ribozyme with a six-nucleotide P1 site was able to distinguish the substrate RNA with a complete match from that with a single mismatch in the P1 region. These results suggest that the HDV ribozyme system is useful for the application in vivo.     

Activation of PKR by RNA misfolding: HDV ribozyme dimers activate PKR

Protein Kinase R (PKR), the double-stranded RNA (dsRNA)-activated protein kinase, plays important roles in innate immunity. Previous studies have shown that PKR is activated by long stretches of dsRNA, RNA pseudoknots, and certain single-stranded RNAs; however, regulation of PKR by RNAs with globular tertiary structure has not been reported. In this study, the HDV ribozyme is used as a model of a mostly globular RNA. In addition to a catalytic core, the ribozyme contains a peripheral 13-bp pairing region (P4), which, upon shortening, affects neither the catalytic activity of the ribozyme nor its ability to crystallize. We report that the HDV ribozyme sequence alone can activate PKR. To elucidate the RNA structural basis for this, we prepared a number of HDV variants, including those with shortened or lengthened P4 pairing regions, with the anticipation that lengthening the P4 extension would yield a more potent activator since it would offer more base pairs of dsRNA. Surprisingly, the variant with a shortened P4 was the most potent activator. Through native gel mobility and enzymatic structure mapping experiments we implicate misfolded HDV ribozyme dimers as the PKR-activating species, and show that the shortened P4 leads to enhanced occupancy of the RNA dimer. These observations have implications for how RNA misfolding relates to innate immune response and human disease.     

The mechanism of acidic hydrolysis of esters explains the HDV ribozyme activity

The hepatitis delta virus (HDV) ribozyme is an RNA enzyme that catalyzes the site-specific trans-esterification reaction. Using high hydrostatic pressure (HHP) technique we showed that HDV ribozyme catalyzes the reaction of RNA cleavage in the absence of magnesium ions according to mechanism of acidic hydrolysis of esters. HHP induces changes of water structure, lowering pH and effect ribozyme catalytic site structure formation without magnesium. HHP, similarly to magnesium ion at ambient pressure stabilizes the higher order RNA structure of HDV, but Mg²⁺ is not involved in the catalysis. Our results clearly support the new mechanism of HDV hydrolysis and show advantages of using HHP in analysis of macromolecules interaction.     

Inhibition of Hepatitis Delta Virus Genomic Ribozyme Self-Cleavage by Aminoglycosides

Subgenomic regions of hepatitis delta virus (HDV) RNA contains ribozyme whose activities are important to viral life cycles and depend on a unique pseudoknot structure. To explore the characters of HDV ribozyme, antibiotics of the aminoglycoside, which has been shown inhibiting self-splicing of group I intron and useful in elucidating its structure, were tested for their effect on HDV genomic ribozyme. Aminoglycosides, including tobramycin, netromycin, neomycin and gentamicin effectively inhibited HDV genomic ribozyme self-cleavage in vitro at a concentration comparable to that inhibiting group I intron self-splicing. The extent of inhibition depended upon the concentration of magnesium ion. Chemical modification mapping of HDV ribozyme RNA indicated that the susceptibility of nucleotide 703 to the modifying agent was enhanced in the presence of tobramycin, suggesting a conformational shift of HDV ribozyme, probably due to an interaction with the aminoglycoside. Finally, we examined the effect of aminoglycoside on HDV cleavage and replication in cell lines, however, none of the aminoglycoside effective in vitro exerted suppressive effects in vivo. Our results represented as an initial effort in utilizing aminoglycoside to probe the structure of HDV ribozyme and to compare its reaction mechanism with those of other related ribozymes.