金藻基因组DNA的提取与PCR扩增

以金藻门群体和单细胞藻类的典型代表--球形棕囊藻和绿色巴夫藻为研究对象,对金藻基因组DNA的提取方法进行了深入研究,并以psbA基因的PCR扩增结果对4种DNA提取方法进行了检测.结果显示,PVP法和高盐法安全、快速、经济,获得的基因组DNA产量高,但DNA杂质含量也较高.CTAB法虽然也具有安全、快速等优势,但提取的DNA产量较低.玻璃粉法提取的DNA质量好,产量也较高,但操作略为烦琐,经济费用高.结论:就球形棕囊藻而言,玻璃粉法是4种方法中最好的DNA提取方法.就绿色巴夫藻而言,4种方法都行,但是从经济和方便考虑,以高盐法为最好.     

线粒体DNA提取方法的比较

目的：将提取线粒体DNA的碱变性法、Triton法、改进高盐沉淀法加以比较,以得到最方便快速提取线粒体DNA的方法。方法：分离Wistar大鼠小肠上皮细胞,用3种方法提取线粒体DNA,紫外分光光度法定量。用琼脂糖凝胶电泳和线粒体ATPase 8亚基基因PCR扩增产物鉴定所提取的线粒体DNA。结果：改进高盐沉淀法线粒体DNA量最多,Triton法最少。OD260／OD280均在1．78-l.85间。将改进高盐沉淀法提取线粒体DNA用于PCR扩增,测定出了线粒体DNA ATPase 8亚基基因序列。结论：改进高盐沉淀法提取线粒体DNA具有操作简单,产量多的优点,该法所提取mtDNA可用于mtDNA测序。     

红树林土壤总DNA不同提取方法比较研究

获得高浓度、大片段、无偏好的土壤微生物总DNA是土壤微生物分子生态学研究和宏基因组文库构建的基础。本研究采用了5种方法从红树林土壤中提取DNA,并对5种方法提取出的DNA的质量和产量进行比较评价。结果表明,5种方法均可从土壤中提取到DNA,但不同方法提取到DNA的产量和质量存在明显差异。Bio101FastPrep?SPINKit(forSoil)抽提到的DNA得率最高,适合分子生态学研究;SDS-GITC-PEG法提取的DNA纯度最高,所得到的DNA片段较大(>48kb),有利于构建宏基因组文库。     

一种适用于RAPD分析的微量山茶DNA提取方法的建立

为建立一种满足RAPD-PCR分析的简便且高产率微量山茶基因组DNA提取方法,探索了在无液氮条件下,采用简化试验步骤的改良CTAB、SDS和Triton X-100方法分别提取山茶新鲜和干燥叶片DNA,通过光谱扫描和测定DNA在波长230 nm,260 nm和280 nm时的吸光度,比较不同DNA提取方法、材料保存方法以及材料用量对DNA提取效率的影响。结果表明,干燥叶片比新鲜叶片更适合作为DNA提取材料,改良CTAB法在提取干燥山茶DNA时纯度和产率较理想,其A260/A280值为1.595-1.736,每克叶片可得到230-295μg DNA,高质量DNA经RAPD-PCR扩增可获得清晰扩增条带。100 mg干燥山茶叶片适合获得高纯度和高产率的DNA,增加材料用量可增大DNA总量,但也增加了DNA中杂质含量。     

水稻基因组DNA微量提取

随着植物学向分子水平的深入发展,研究中经常需要获得高质量的植物DNA样品,因此,建立植物DNA提取与纯化的常规实验方法对教学和科研都显得非常必要。介绍一种快速提取微量DNA的方法,该方法简单易行,无需任何特殊设备,所需样品量少,提取的DNA纯度高,可满足以PCR扩增为基础的实验需要。     

同时提取油茶中DNA和RNA的简便方法

介绍了一种以CTAB提取方法为基础,结合其它DNA和RNA提取方法,经反复实验建立的一种同时提取油茶DNA和RNA的简便方法。该方法能有效地去除植物组织中酚类和多糖等次生物质的影响,所得到的DNA和RNA纯度高,完整性好,可以用于进一步的如DNA分析,mRNA的分离,RT-PCR,构建cDNA文库和基因表达分析等实验。     

一种改良的植物DNA提取方法

植物组织中含有大量多糖、多酚、酯类等次生代谢产物, 要从中提取高质量的DNA比较困难。针对这一情况, 该文提出一种改良CTAB植物DNA提取方法(mCTAB), 并以10种常见植物为实验材料, 与4种常用的植物DNA提取试剂盒作对比。结果表明, mCTAB法提取的DNA产率高且质量好, PCR扩增成功率也较高, 而提取成本显著低于DNA提取试剂盒, 可有效用于植物DNA条形码等研究的植物DNA提取。     

甘草属植物DNA提取方法研究

甘草属植物黄酮类、多糖等次生代谢产物高,严重影响了的DNA提取质量和产量。本研究通过对甘草属植物DNA不同提取材料和4种DNA提取方法的比较研究,筛选出一种适合甘草属植物的DNA提取方法,该方法可有效去除次生代谢产物对DNA的干扰,能较好的应用于RAPD扩增和遗传多样性分析。     

康氏木霉基因组DNA提取方法的比较研究

采用3种常规DNA提取方法提取瑞氏木霉基因组DNA。结果表明:冷冻研磨CTAB法更适合此真菌DNA的提取,试剂盒提取的总DNA纯度和浓度也较高,但是价格昂贵,饱和酚抽提法提取的DNA浓度不高,且易有降解现象,不适合分子生物学操作的要求。     

DNA提取方法对一串红不同部位DNA提取的比较

本文以一串红的叶片、茎段、花为材料,分别采用高盐低pH法、十二烷基硫酸钠(SDS)法、改良十六烷基三乙基溴化铵(CTAB)法、核DNA法和十六烷基三乙基溴化铵(CTAB)区室法等5种不同方法对其进行了基因组DNA提取效果的比较分析.结果表明,除用高盐低pH法在一串红花中未提取出DNA外,其它均可提取出DNA,都能进行RAPD扩增.5种方法在一串红DNA提取中,提取效果由高到低依次为:核DNA法、改良CTAB法、SDS法、CTAB区室法、高盐低pH法;3个部位提取结果显示:叶片较容易得到高质量的DNA,茎段次之,花最差.     

Heavy Metal Accumulation and Ecological Responses of Turfgrass to Rubbish Compost with EDTA Addition

Domestic rubbish compost is a complex-polluted system, containing multiple heavy metals,which limits its application. In the present study, Cr, Mn, Ni, Cu, Zn, Cd, and Pb accumulation and ecological responses of turfgrass to rubbish compost were investigated following the addition of EDTA. The results showed that the addition of EDTA significantly increased heavy metal accumulation in Lolium perenne L.and Festuca arundinacea L. Most heavy metal concentrations in L. perenne increased with increasing EDTA supply. The concentrations of Cr, Mn, Ni, Cu, and Cd in L. perenne were highest following the addition of 30 mmol/kg EDTA and the concentrations of Cr and Ni at this point reached concentrations of1914.17 and 521.25 μg/g, respectively. When the EDTA level was ＜ 20 mmol/kg, the accumulation of most heavy metals in F. arundinacea increased with increasing EDTA supply, but showed a tendency to decrease at EDTA concentrations ＞20 mmol/kg. The highest concentrations of Mn, Ni, Cu, and Zn in F.arundinacea reached 268.01, 110.94, 161.52 and 1 354.97 μg/g, respectively, following the addition of 20mmol/kg EDTA. The EDTA-induced increase in the accumulation of heavy metals in turfgrass was plantand metal-specific. L. perenne had a relatively high ability to accumulate Cr, Ni, and Zn. The highest Zn concentration was 2 979.58 μg/g and, following the addition of EDTA, the concentrations of the three metals were increased 26.23, 20.03, and 10.49-fold, respectively, compared with control. However, F. arundinacea showed a high ability to accumulate Cr, with the highest concentration (596.02 μg/g) seen following the addition of 30 mmol/kg EDTA; the concentration of Cr increased 15.51-fold compared with control. With EDTA addition, ecological responses of both turfgrass species showed that EDTA at concentrations ＜10mmol/kg increased seed germination and aboveground net primary production (ANP) of L. perenne and slightly inhibited those of F.arundinacea, but EDTA at concentrations ＞20 mmol/kg inhibited these parameters significantly for both species. Moreover, EDTA increased the chlorophyll and proline content at all concentrations tested. On the basis of the synthetic remediation index, the optimal EDTA concentration for turfgrass remediation of heavy metals in compost is approximately 10 mmol/kg.     

Purification of 120-Kilodalton Phytochrome from Oryza Sativa L

The procedures of Grimm and Rüdiger for the purification of 120 kDa phytochrome from oat seedlings were modified to isolate native phytochrome from etiolated rice (Oryza sativa L. subsp, japonica var. nongken 58) seedlings. Approximately l kg of 6d old seedlings (the first 2 days at 33℃, the last 4 days at 27 ℃ in darkness) were frozen in liquid nitrogen and then homogenized in a modified Waring blendor with an extraction buffer, at final pH 8.45 (4 ℃). After polyethylenimine precipitation, phytochrome in extract was converted to Pfr by irradiation of the resulting supernatant for 10 min with red light. The step of ammonium sulfate precipitation was followed by resuspending of resultant pellet in buffer B with the ratio of 10 ml per phytochrome unit. The pellet precipitated with ammonium sulfate at 42% saturation from combined phytochrome cont ning fractions after hydroxyapatite chromatography was washed with 10 mmol/l phosphate buffer in 0.8 ml instead of 0.65 ml per phytochrome unit. Then it was washed successively with 200 mmol/l and 100 mmol/1 phosphate buffer (0.85 ml per phytochrome unit). Native phytochrome (120 kDa) in 12% yield was dissolved in 2 mmol/l EHPES buffer (2.2 ml per phytochrome unit, pH 7.8, containing 5 mmol/l EDTA and 14 mmol/l 2-mercaptoethanol) was proved to be pure in SDS- polyacrylamide electrophoresis and showed typical absorption spectrum as that of native oat phytochrome.     

A Simple and Efficient Method for DNA Purification from Samples of Highly Clotted Blood

Rapid purification of DNA from samples of highly clotted blood is a challenging problem due to the difficulty in recovering and dispersing blood clots. We developed a new method for discarding the serum-separator gel and rapidly dispersing the blood clots. A special disposable tip was inserted into the serum-separator gel so that the serum-separator gel could be discarded. The blood clot obtained was dispersed into small pieces through a copper mesh (pore size, 250 μm) in a special dispersing instrument by centrifugation. After lysis of red blood cells and white blood cells, genomic DNA was concentrated and desalted by isopropanol precipitation. The mean yield of DNA purified from a 0.3-ml blood clot was 22.70 μg in 173 samples of clotted blood cryopreserved for 1 month, and 19.02 μg in 1,372 samples of clotted blood cryopreserved for >6 months. DNA samples were successfully performed through polymerase chain reaction, real time polymerase chain reaction, and melt curve analysis. Their quality was comparable with that purified directly from EDTA-anticoagulated blood. The new method overcomes the difficulties in recovering and dispersing blood clots, allowing efficient purification of DNA from samples of highly clotted blood.     

FTA卡和普通定性滤纸提取DNA方法研究

用FTA采样卡和普通定性滤纸采集藏绵羊血样,采用NaOH法提取血液基因组DNA,利用设计的一对引物对DRB1基因第三外显子进行扩增,通过PCR产物琼脂糖凝胶检测,对普通定性滤纸与FTA采样卡的两种提取DNA的方法进行比较,结果认为采用普通定性滤纸-NaOH法提取血液基因组DNA,NaOH的最佳洗涤浓度是25 mmol/L,采用FTA-NaOH法提取血液基因组DNA,NaOH的最佳洗涤浓度是20 mmol/L,但普通定性滤纸法提取血液基因组DNA平均成本远低于FTA采样卡,普通定性滤纸法提取血液基因组DNA具有快速、便捷、经济及高效的特点.     

牛成纤维细胞的分离与体外培养

研究了牛胎儿和成年牛皮肤组织成纤维细胞的分离、培养、纯化方法和生长特征。通过组织块贴壁培养和分离单细胞接种培养均能获得原代牛皮肤细胞。用2.5 g/L胰蛋白酶+1mmol/L EDTA和5 g/L胶原酶I联合消化牛皮肤组织较2.5 g/L胰蛋白酶+1 mmol/L EDTA消化,得到更多的单个细胞,两者之间差异极显著(P<0.01),但其死细胞比率却有较大升高;2.5 g/L胰蛋白酶+1 mmol/L EDTA消化牛胎儿组织得到的单细胞数显著高于皮肤组织消化后得到的细胞数(P<0.01),死细胞比率也高于同种酶消化的皮肤组织。分离纯化的胎儿和皮肤成纤维细胞的生长曲线都正常且相似。2.5 g/L胰蛋白酶+1 mmol/L EDTA消化贴壁细胞后死细胞率明显高于用0.5g/L胰蛋白酶+0.53 mmol/L EDTA消化的细胞(P<0.05);培养24 h后细胞贴壁率前者要明显低于后者(P<0.05)。用0.5 g/L胰蛋白酶轻度消化混杂生长的成纤维细胞和上皮样细胞,经过反复贴壁传代2～3代,可得到较纯的成纤维细胞。     

林麝血液生理生化指标研究

以健康雄麝、健康雌麝和患化脓病林麝各10头为研究对象,比较它们之间的血液生理生化指标差异。结果表明:(1)健康雄麝和健康雌麝的甘油三酯、极低密度脂蛋白存在显著差异(P<0.05)。雄麝的甘油三酯为0.32mmol/L,极低密度脂蛋白为0.14mmol/L;雌麝的为0.47mmol/L,0.21mmol/L;其他生理生化指标无显著差异。(2)健康林麝与患化脓病林麝的白细胞、淋巴细胞百分比、嗜中性粒细胞百分比存在极显著差异(P<0.01);健康林麝的白细胞数量为29.08×109个/L、淋巴细胞百分比为62.01%、嗜中性粒细胞百分比为34.05%;患化脓病林麝的为104.67×109个/L、50.87%、45.37%。健康林麝与患化脓病林麝之间白蛋白、球蛋白、天门冬氨酸氨基转移酶、乳酸脱氢酶、总胆固醇、肌酐、血糖存在显著差异(P<0.05),健康林麝的白蛋白为44.44g/L、球蛋白为33.6g/L、天门冬氨酸氨基转移酶为316.43U/L、乳酸脱氢酶为700.68U/L、总胆固醇为2.14mmol/L、肌酐为108.47μmol/L、血糖为7.29mmol/L;患化脓病林麝的为37.23g/L、47.45g/L、478U/L、840.75U/L、1.16mmol/L、85.52μmmol/L、5.04mmol/L。这些结果为养殖林麝化脓病的诊断提供了参考数据。     

Plasma chemistry reference values in ostriches

Reference values for 18 plasma chemical variables in blue neck ostriches (Struthio camelus australis, n = 60, age 24-36 mo) were established for use in veterinary clinical practice using nonparametric statistics. The following values were established for the percentiles P2.5 and P97.5: sodium 147-157 mmol/L, calcium 2.4-4.8 mmol/L, inorganic phosphate 1.3-2.3 mmol/L, chloride 94-105 mmol/L, glucose 10.3-13.7 mmol/L, urea 0.5-0.8 mmol/L, uric acid 351-649 mumol/L, bile acids 8-33 mumol/L, total protein 39-56 g/L, albumin-globulin ratio 0.45-0.59, osmolality 304-330 mOsm/kg, alkaline phosphate 69-217 IU/L, aspartate aminotransferase 243-418 IU/L, gamma-glutamyltransferase 0-1 IU/L, creatine kinase 1648-4894 IU/L, glutamate dehydrogenase 8-17 IU/L, and lactate dehydrogenase 860-2236 IU/L. The plasma calcium concentration was significantly (P < 0.001; r = 0.74) related to the total protein concentration and an adjustment-formula for calcium was derived: adjusted Ca (mmol/L) = Ca (mmol/L)--0.09 TP (g/L) + 4.4. The influence of blood sample treatment on the plasma potassium concentration as seen in other avian species was demonstrated in a separate experiment, emphasizing the need to separate plasma and cells immediately after collection in avian blood samples.     

Tris对高LET碳重离子辐照下质粒DNA链断裂的保护作用

利用100 keV/μm碳离子束(初始能量为290 MeV/u)照射溶解于纯水、10 mmol/L Tris、1 mmol/L EDTA及TE 缓冲液中的pUC19质粒DNA.通过琼脂糖凝胶电泳技术分析了不同溶液中各种形态DNA分子所占份额,并计算得到不同剂量下平均每个质粒分子中单链断裂(SSB)及双链断裂(DSB)的数目.发现Tris通过抑制SSB和DSB的产生对碳重离子辐照下的质粒DNA有明显的保护作用,而EDTA能够加剧SSB的产生而抑制DSB的形成.     

不同固定剂保存动物组织标本对RAPD反应的影响

为解决野外采集动物标本时,有效地保存好标本,并方便地带回实验室用于ＲＡＰＤ分析的难题。该研究以同一个体的冻存组织为对照,比较了从４种不同固定剂保存的组织标本中提取ＤＮＡ,并用于ＲＡＰＤ扩增。     

Modified nitrocefin‐EDTA method to differentially quantify the induced L1 and L2 β‐lactamases in Stenotrophomonas maltophilia

Aim: To estimate the ethylene diamine tetraacetic acid (EDTA) concentration at which the L1 enzyme activity in the cell extracts of Stenotrophomonas maltophilia can be mostly inhibited. Methods and Results: The effective inhibition concentration of EDTA against the L1 enzyme in the cell extracts was firstly evaluated by using the L2 isogenic mutant of S. maltophilia KJ, KJΔL2, as the assayed strain. Approximately 92% L1 activity was inhibited by 10 mmol l^?1 EDTA, which is 100‐fold higher than that from previously reported protocols (0·1 mmol l^?1). Three phylogenetic clusters of L1 proteins were revealed from 11 clinical S. maltophilia isolates, with a L1 protein divergence of 0–11%. The EDTA concentration required to inhibit the L1 enzymes of different phylogenetic clusters was estimated to be 10 mmol l^?1. Conclusion: The previous nitrocefin‐EDTA protocol for differentially quantifying the L1 and L2 activity in the cell extracts has been modified by raising the added EDTA concentration to 10 mmol l^?1. Significance and Impact of the Study: A rapid and accurate method for determination of L1 and L2 activity will provide a convenient tool for enzyme characterization and induction mechanism study of S. maltophilia.