基于超滤膜辅助的糖蛋白全N-连接糖链的富集和质谱解析

糖基化作为一种常见的蛋白质翻译后修饰,对蛋白质的空间结构、生物功能等具有重要的影响.解析糖蛋白糖链结构有助于更清楚地认识糖蛋白及其功能.本研究建立了一种基于超滤膜富集血清中糖蛋白全N-连接糖链,并利用质谱技术对糖链结构进行分析的方法.根据糖蛋白及其糖链结构之间的分子质量差异,利用Millipore公司的10 ku超滤膜富集血清糖蛋白上酶解(PNGase F)释放的全N-连接糖链,并使用MALDI-TOF/TOF-MS解析糖链结构.通过该技术可以从血清中富集并鉴定到23种独特的N-连接的糖链结构,并且利用二级质谱进行了结构确认.该方法可以被用于从大量生物样本中富集糖蛋白全N-连接糖链,可以达到快速、高通量地解析糖蛋白N-连接糖链的目的.     

凝集素芯片技术检测糖蛋白方法的建立及初步应用

建立了凝集素芯片技术检测糖蛋白的方法,对实验条件进行了优化,应用凝集素芯片初步检测分析了Chang?蒺s liver正常肝细胞总蛋白中的糖蛋白糖链构成．将凝集素ConA、GNA固定于环氧化修饰的玻片表面,用Cy3标记标准糖蛋白RNaseB,利用凝集素识别特异糖链的原理建立凝集素芯片检测糖蛋白的方法．摸索出最佳封闭剂是含1% BSA的磷酸缓冲液,最佳孵育时间及温度为3 h和室温,最佳孵育缓冲液为含1% BSA和0.05% Tween-20的磷酸缓冲液,并用甘露糖抑制实验验证了凝集素芯片结合的特异性．用包含10种凝集素的芯片,成功解析了标准糖蛋白RNaseB、Fetuin的糖链构成,证实了凝集素芯片检测糖蛋白糖链的可行性．最后用凝集素芯片初步检测分析了Chang?蒺s liver正常肝细胞总蛋白中的糖蛋白糖链构成,发现 Chang's liver正常肝细胞总蛋白中的糖蛋白可能有多价 Sia或GlcNAc、terminalα-1,3 mannose、GalNAc、Galβ-1,4GlcNAc这些糖链结构的存在．蛋白质糖基化是一种重要的翻译后修饰,它在微生物感染、细胞分化、肿瘤转移、细胞癌变等生命活动中起着重要作用,因此近年来蛋白质的糖基化研究受到广泛的重视,但由于缺乏一种简便、快速、高通量的检测手段,蛋白质糖基化修饰的研究发展缓慢．凝集素芯片技术的出现实现了对糖蛋白的快速、准确、高通量的检测 分析．     

N─糖链在细胞粘附中的作用

参与细胞与细胞,细胞与基质相互作用的细胞粘附分子均为含N─糖链的糖蛋白,N─糖链在细胞的识别、粘附过程中起一定的作用。本文就纤连蛋白、层粘连蛋白、整合蛋白、选择蛋白和凝集素受体等分子中N─糖链与细胞识别和粘附关系加以讨论。     

基于超滤膜辅助的糖蛋白全O-连接糖链的富集和MALDI-TOF/TOF质谱结构解析

哺乳动物中约有50%以上的蛋白质都发生了糖基化修饰.连接在丝氨酸或苏氨酸上的O-连接糖链是常见的蛋白质糖基化修饰方式之一,其主要功能是维持与其连接的蛋白质部分的空间构象,保护其免受蛋白酶水解及覆盖某些抗原决定簇.糖链结构的解析有助于更清楚地认识糖蛋白及其功能.本研究建立了一种基于超滤膜辅助(FASP)富集细胞、血清和尿液中糖蛋白全O-连接糖链的方法,根据糖蛋白与其糖链结构之间的分子质量差异,利用10 KD超滤膜富集蛋白质样品中由β消除反应释放的全O-连接糖链,将糖链甲基化修饰后再使用MALDI-TOF/TOF-MS进行解析,同时利用二级质谱进行结构确认.通过上述方法可从标准糖蛋白mucin、细胞、血清和尿液样本中分别鉴定到83、29、33和85种O-连接糖链结构,利用该方法可以从复杂样品中富集和解析糖蛋白全O-连接糖链,实现快速、高效、高通量地解析糖蛋白O-连接糖链的目的.     

酵母O-甘露糖转移酶的研究进展

随着糖蛋白类药物的需求量不断增加,酵母表达系统的人源化改造成为当务之急。其中,酵母蛋白的O-糖基化因O-糖链种类繁多、组分单一以及糖基化位点预测困难等因素,限制了酵母蛋白的O-糖基化人源化改造。从酵母蛋白的O-糖链结构、O-糖链发生过程及O-糖链的功能展开综述,重点介绍起始酵母蛋白O-糖基化过程的O-甘露糖转移酶家族(family of protein O-mannosyltransferases, PMTs)成员的研究现状,希望对酵母蛋白O-糖基化人源化改造研究提供参考。     

糖蛋白的研究进展

糖蛋白是由糖链与多肽链以多种形式共价修饰而形成的一类重要生理活性物质.糖蛋白在生物体内种类繁多,分布广泛,具有重要的功能.糖蛋白的性质及功能和糖链的结构有关,因此糖蛋白中糖链的结构及作用机制研究成为生物学基础理论的课题之一.就近年来糖蛋白研究中糖蛋白样品的提取分离、糖链释放及结构分析的技术方法及研究领域作了简要介绍.     

茶树叶糖蛋白分离及鉴定的初步研究

茶叶是一种有益健康的保健食品,保健功能在于它有多种化学活性成分。近年来研究表明,茶叶糖蛋白可能是茶叶的保健因子之一。从茶树叶中提取了总蛋白、45%~70%硫酸铵分级总蛋白、分级蛋白Sephadex G-100凝胶层析分离出粗糖蛋白,根据糖蛋白糖链及蛋白的对照染色鉴定出多种茶树叶糖蛋白,并从SDS-胶上快速纯化了三种茶叶糖蛋白。ConA-Sepharose 4B亲和层析从茶树叶总蛋白中分离出16种天然活性糖蛋白。     

七种二糖拟糖蛋白的制备及其在肝内源性凝集素组织定位中的应用

各种已知结构的糖蛋白是复合糖和糖结合蛋白研究中必需的工具。由于天然糖蛋白中糖链结构的复杂性和不均一性,不适宜作为研究的工具。人工合成拟糖蛋白(neoglycoproteins)为糖的结构和功能的研究及凝集素和其它糖结合蛋白的研究提供了重要工具,同时为内源性凝集素(endogenous lectin,EL)介导的糖蛋白——药物靶向治疗进一步临床使用提供了物质基础。本文报道以牛血清白蛋白(BSA)和     

基于质谱技术的糖蛋白质组学的分析方法及其在癌症研究中的应用

蛋白质的糖基化是一种最为重要的蛋白质翻译后修饰。它涉及多种生物途径和分子功能。蛋白质上糖链位点的异常改变与许多疾病有着密切的联系。已确认的癌症生物标志物中超过一半都属于糖蛋白。无论是在疾病的早期检测还是疾病的疗效评价,糖蛋白的糖链都可以作为明确的生物标志物。因此近几年,糖蛋白质组学逐渐成为一个新兴的热点研究领域,并为癌症生物标志物的发现做出了重要的贡献。目前,基于质谱技术的糖蛋白质组学可以实现对上千种糖蛋白的分析,从而获得蛋白糖基化的定性和定量方面的详细信息。本文对近些年糖蛋白质组学研究的方法和技术以及其在癌症研究中的应用进行了总结。     

糖蛋白的糖形（续）

糖蛋白的糖形（续）王克夷（中国科学院上海生物化学研究所,上海２０００３１）３．糖形和糖蛋白功能研究［２、５］糖蛋白上糖链的功能是多方面的。粗略他说,糖链的功能可归结为４个方面：一是作为没有糖基个性的一种亲水的信号,进而影响到整个糖蛋白的亲水和疏水的平...     

Fluorescence polarization studies of lysozyme and lysozyme-saccharide complexes

The fluorescence polarization properties of hen egg white lysozyme and of an iodine oxidized derivative of lysozyme in which tryptophan-108 was selectively modified, were investigated. Using the addition law of anisotropy of mixed systems, the contribution of tryptophan-108 to the anisotropy spectrum of lysozyme and lysozyme-chitotetraose complex was separated. The rate of fluorescence polarization was studied as a function of pH. The major contribution to this rate is shown to arise from internal rotations of the indole side-chain of tryptophan-108 as well as from structural changes around tryptophan-62 and 63. From the dependence of the fluorescence polarization of lysozyme and IL with saccharide concentration, the existence of the simultaneous binding of two saccharide molecules to the enzyme cleft was inferred. At low chitotetraose concentration, the subsites A, B and C are occupied with an association constant of 8 × 10⁴m^?1 whereas at high saccharide concentration, both subsites A–B–C and E–F are occupied. The association constants of a series of saccharides to subsites E–F were measured and all found to be around 2 × 10²m^?1. The dependence of the rate of depolarization with saccharide concentration was determined and showed that, upon binding of the first saccharide molecule to subsites A, B and C, the rate of internal rotation of tryptophan-108 and tryptophan-62 and 63 was much reduced whereas upon further binding of a saccharide molecule in subsites E–F the rates are enhanced. This behaviour was interpreted as an indication that the binding of saccharide in subsites E–F induces changes in conformation of the enzyme which affect the entire active site architecture.     

Oxidatively Damaged Erythrocytes Are Recognized by Membrane Proteins of Macrophages

Human erythrocytes incubated with an iron catalyst ADP-chelated Fe³⁺ undergo oxidative damage of the membrane including lipid peroxidation, protein oxidation, and protein aggregation, and become susceptible to recognition by human macrophages. In order to clarify the membrane components of macrophages responsible for the recogrution of the oxidized erythrocytes, binding of the oxidized cells to dot and Western blots of solubilized membrane of macrophages was investigated. The oxidized erythrocytes but not unoxidized cells bound to the dot blots. The binding was effectively inhibited by saccharide chains of band 3, a major glycoprotein of human erythrocytes, and lowered when the saccharide chains of band 3 were removed from the cell surface by pretreatment of the cells with endo-P-galactosidase which specifically cleaves the polylactosaminyl saccharide chains of band 3. The oxidized erythrocytes bound to the membrane proteins of macrophages with molecular mass of about 50, 80, and 120 kDa on Western blots depending on the saccharide chains of band 3 on their surface. The results suggest that the oxidatively damaged erythrocytes are specifically recognized by these proteins of macrophage membrane having saccharide binding ability.     

Synthesis and ordered structure of amphipatic block copolymers with a saccharide and a peptide block

Amphipatic block copolymers (OβEb) with a hydrophilic saccharide block and a hydrophobic polypeptide block were synthesized. In these copolymers the saccharide block is the glyco-amino acid Oβ from ovomucoid and the peptide block (Eb) is a poly(γ-benzyl-L -glutamate) block. Copolymers OβEb exhibit, in the solid state and in Me₂SO concentrated solutions, mesomorphic lamellar structures where the polypeptide chains are in an α-helical conformation. Depending on the molecular weight of the polypeptide block, three types of lamellar structures are obtained, and they differ by the mode of organization of the polypeptide chains in their lamellae and by the T or Y conformation of the saccharide block.     

Age-correlation of protein utilization to saccharide intake

Male Wistar rats aged 30, 90, 150 and 360 days were fed ad libitum on diets with an optimum protein and fat content for their respective ages and an increasing saccharide content. Net protein utilization (NPU) was determined from the body nitrogen and protein intake values and the course of gluconeogenesis in the liver was measured by specific phosphoenolpyruvate carboxykinase (PEPCK) activity. According to the growth curve for the standard diet, animals aged 30 and 90 days have a high growth rate (3.245 g/day), 150-day-old rats grow more slowly (1.856 g/day) and 360-day-old animals put on scarcely any weight at all (277 mg/day). In 30-day-old rats, NPU attains maximum values in the presence of a 36% saccharide content in the diet, in 3- and 5-month-old animals in the presence of 51% saccharides and in one-year-old animals in the presence of 41% saccharides in their food. The course of gluconeogenesis also corresponds to these values. PEPCK activity in the youngest age group is greatest in the presence of 31% saccharides in the food, at 90 days it is stimulated in the presence of 31-46% saccharides, at 150 days the decisive concentration is 41 and 46% and at one year proteins are used for saccharide synthesis in diet with a 31 and 36% saccharide concentration. For optimum saccharide values, PEPCK activity is reduced in every age group; together with the maximum NPU values, this indicates that proteins are used for growth and building of the organism at an early age and for the renewal of tissues and organs and maintenance of the organism in adulthood.     

Galactinol synthase activity and soluble sugars in developing seeds of four soybean genotypes

Galactinol synthase (UDP-galactose:inositol galactosyltransferase) is the first unique enzyme in the biosynthetic pathway of raffinose saccharides. Its role as a regulator of carbon partitioning between sucrose and raffinose saccharides in developing soybean (Glycine max L. Merrill) seeds was examined. Galactinol synthase activity and concentrations of sucrose, stachyose, and raffinose were compared during seed development between two genotypes that were high and two genotypes that were low in mature seed raffinose saccharide concentration. In all genotypes, sucrose concentration increased as seed development progressed, but in both low raffinose saccharide genotypes, greater increases in sucrose concentration were observed late in seed development. Sucrose to stachyose ratios in mature seeds were 2.3-fold greater in low raffinose saccharide genotypes than in the high raffinose saccharide genotypes. During seed development, higher levels of galactinol synthase activity were observed in the high raffinose saccharide genotypes than in the low raffinose saccharide genotypes. A common linear relationship for all four soybean genotypes was shown to exist between galactinol formed estimated from galactinol synthase activity data and the concentration of galactose present in raffinose saccharides. Results of this study implied that galactinol synthase is an important regulator of carbon partitioning between sucrose and raffinose saccharides in developing soybean seeds.     

Anomeric configuration of N-acetylglucosaminyl phosphorylundecaprenols formed in Bacillus cereus Membranes.

The structural difference was studied between two N-acetylglucosaminyl phosphorylundecaprenols formed by incubation of Bacillus cereus membranes with UDP-N-acetylglucosamine. On the treatment with 50% phenol, the major one of these glycolipids (Lipid 1) yielded a saccharide phosphate, while the other (Lipid 2) yielded N-acetylglucosamine along with a saccharide phosphate. The saccharide phosphates from Lipids 1 and 2 were identified as alpha-N-acetylglucosamine 1-phosphate and its beta-anomer, respectively, based on their susceptibility to acid, alpha- and beta-N-acetylglucosaminidases, and UDP-N-acetylglucosamine pyrophosphorylase. Thus, it seems most probable that Lipids 1 and 2 were alpha- and beta-N-acetylglucosaminyl phosphorylundecaprenols, respectively.     

Solubilization of a Lipophilic Compound in Highly Concentrated Saccharide Solutions Containing Protein

Solubilization of a lipophilic compound in highly concentrated saccharide solutions containing protein was studied by measuring the amount of the lipophilic compound solubilized, the surface hydrophobicity of protein, the line width of the water signal in ¹H-NMR spectra, and the unfreezable water content using a differential scanning calorimeter (DSC).

The solubilizing ability, which was shown by the amount of solubilized p-dimethylaminoazobenzene (DMAB), increased with increasing saccharide concentration in the aqueous system. The effects of different saccharides on the solubilizing ability of a saccharide and bovine serum albumin (BSA) mixture decreased in the following order: sucrose > maltose > fructose > glucose. The solubilizing ability of a saccharide and BSA mixture was higher about 4–5 times than that of saccharide only.

A good correlation was observed between the solubilizing ability of a saccharide and BSA mixture and the surface hydrophobicity of BSA. The line width of the water signal in ¹H-NMR spectrum and the unfreezable water content using DSC, that is, the bound water content in saccharide solution containing BSA increased with increasing saccharide concentration.

From these results, a large amount of DMAB solubilized in a highly concentrated saccharide solution containing BSA would be attributed to the hydrophobicity interaction between BSA and DMAB due to the surface hydrophobicity of BSA which increased with increasing bound water content.     

Membrane Adhesion via Glycolipids Occurs for Abundant Saccharide Chemistries

Membrane-bound oligosaccharides with specific chemistries are known to promote tight adhesion between adjacent membranes via the formation of weak saccharide bonds. However, in the literature, one can find scattered evidence that other, more abundant saccharide chemistries exhibit similar behavior. Here, the influence of various glycolipids on the interaction between adjacent membranes is systematically investigated with the help of small- and wide-angle x-ray scattering and complementary neutron diffraction experiments. Added electrostatic repulsion between the membrane surfaces is used to identify the formation of saccharide bonds and to challenge their stability against tensile stress. Some of the saccharide headgroup types investigated are able to bind adjacent membranes together, but this ability has no significant influence on the membrane bending rigidity. Our results indicate that glycolipid-mediated membrane adhesion is a highly abundant phenomenon and therefore potentially of great biological relevance.     

Valency-dependent stimulating effects of lima bean lectins on lymphocytes of different species.

Di- and tetravalent lectins purified from lima beans have mitogenic activity towards human, bovine, rabbit, rat and probably mouse lymphocytes; the effect of the mitogen varies for the different species. The mitogenic activity of the 2 lima bean lectins is related to their valency: LIM 124, the component with molecular weight 124 000 and 2 saccharide binding sites, is a weak mitogen; LIM 247, the component with molecular weight 247 000 and four saccharide binding sites, is several times more active. There are indications that the tetravalent LIM 247 exhibits B cell stimulatory activity.     

Artificial metalloglycoclusters: compact saccharide shell to induce high lectin affinity as well as strong luminescence

Tris-bipyridine ferrous and ruthenium complexes carrying various saccharide appendages have been investigated to develop sensory systems for monitoring saccharide-binding phenomena. Ferrous O-glycoclusters having spacer moieties inserted between saccharide appendages and the complex core showed enhanced affinities to lectins, but ferrous N-glycoclusters, in which the saccharide-appendages are directly linked to the complex core via amide linkage, had low lectin-affinities. Molecular dynamics calculation indicated that the O-glycoclusters have flexible and densely packed saccharide clusters, in contrast to the octahedrally fixed saccharide arrays of N-glycoclusters. Flexibility of saccharide clusters is essential for their enhanced affinity, probably to induce conformational change to fit the recognition sites of lectins. According to these insights, ruthenium O-glycoclusters have been designed as luminescence biosensors. The ruthenium complexes carrying alpha-manno clusters exhibited excellent affinities (IC(min) = 9.0 x 10(-)(8) M) to concanavalin A (ConA). It is suggested from conformational analysis that densely packed mannoclusters can be fit properly to the recognition site of ConA. The binding was enthalpicaly driven (deltaH degrees = -21.8 kcal/mol). This binding behavior is quite similar to that of 1-3/1-6 trimannoside to ConA. They have strongly amplified luminescence (Phi(em) = 0.15), and their luminescence intensities were changed (approximately 40%) upon binding to the specific lectins. The ruthenium glycoclusters can be a suitable sensory system for saccharide-binding phenomena.