利用SSR定位籼稻品种Kaharamana中抗褐飞虱基因Bph9

褐飞虱是危害水稻生产最重要的害虫之一,利用寄主抗性被认为是防治褐飞虱最经济而有效的方法。斯里兰卡水稻品种Kaharamana对东亚和东南亚的褐飞虱种群均表现抗虫性,利用分子遗传学的方法对其携带的Bph9基因进行了SSR定位。所用的遗传群体为来源于Kaharamana和02428的含有180个单株的F2分离群体,每个F2单株套袋自交获得F2：3家系。利用苗期集团鉴定埘F2：3家系进行抗褐飞虱鉴定,以推测相应F2单株的基因型。连锁分析表明,Bph9位于第12染色体上的两个SSR标记RM463和RM5341之间,分别与之相距6．8cM和9．7cM。该标记有助十将Bph9用于分子标记辅助选择育种研究。     

云南野生稻抗褐飞虱评价及其抗性基因鉴定

褐飞虱是水稻生产中最严重的害虫之一,从野生稻中发掘抗虫基因,有利于培育具有抗虫能力强的水稻新品种。该研究通过对云南野生稻进行温室和大田抗虫鉴定以及9个已知抗褐飞虱基因的PCR鉴定,发现云南野生稻对褐飞虱表现出不同程度的抗性,尤其疣粒野生稻和药用野生稻对褐飞虱表现出高抗,可作为抗虫基因发掘的优良抗源材料;不同褐飞虱抗性的云南野生稻中含有的抗褐飞虱基因差异很大,3种野生稻中均不含Bph1和Bph18(t)抗病基因,景洪普通野生稻和元江普通野生稻可能含bph2基因,东乡普通野生稻可能含bph2、Bph15和Bph27(t)基因,疣粒野生稻中可能含bph2和bph19(t)基因,药用野生稻和药用野生稻(宽叶型)中可能含bph2和Bph6基因,药用野生稻F1中可能含bph2、Bph14和bph20(t)基因,药用野生稻F2中可能含bph2和Bph27(t)基因或者其同源基因。该研究为快速发掘利用云南野生稻中的抗虫基因奠定了理论基础。     

利用分子标记辅助选择改良珍汕97的稻瘟病抗性

利用回交育种中产生的回交群体，结合前人的研究结果构建了Pi1基因区域的局部分子标记连锁图，通过BC1F2家系的接种结果判断其基因型。将Pi1定位在RFLP标记RZ536与SSR标记RM144之间，图距分别为9．7cM、6．8cM，从而建立了一套完整的以PCR为基础的分子标记辅助选择体系。通过分子标记和抗性验证两种选择方式相结合，经过三代回交将Pi1区段快速导入受体亲本珍汕97B中。在BC3F1中利用15条ISSR引物扩增的167条随机分布在基因组中的多态性带筛选背景，得到4个背景较好的单株。经过纯合筛选及抗性验证后共得到17个带有抗性基因Pi1的改良珍汕97株系。试验表明微卫星标记在正向选择、负向选择及背景选择中都起到极大的作用。     

矮泰引-3中半矮秆基因的分子定位

矮泰引-3的矮生性状受两对独立遗传的半矮秆基因控制,利用SSR标记将这两个矮秆基因分别定位到第1和第4染色体上。等位性测交的结果表明,位于第1染色体上的矮秆基因与sd1是等位的,所以仍然称其为sd1;而位于第4染色体上的矮秆基因是一个新基因,暂命名为sdt2。利用SSR标记将sd1定位于RM297、RM302和RM212的同一侧,而与OSR3共分离,它们之间的位置关系可能是RM297-RM302-RM212-OSR3-sd1,遗传距离分别为4．7cM、0cM、0．8cM和0cM,这与sd1在第1染色体长臂上的确切位置是基本一致的。利用已有的SSR标记和拓展的SSR标记将sdt2定位于SSR332、RM1305和RM5633、RM307、RM401之间,它们的排列位置可能是SSR332-RM1305-sdt2-RM5633-RM307-RM401,它们之间的遗传距离分别为11．6cM、3．8cM、0．4cM、0cM和0．4cM。     

水稻粒长基因GL3的遗传分析和分子标记定位

为了解析水稻粒长的遗传机制,以大粒水稻品种‘80018-TR161-2-1’和小粒水稻品种‘日本小黑稻’及其F2代200个株系和F2：3家系为材料,分析水稻粒长的遗传学性状。结果表明,谷粒长度的分离比在F2及F2：3家系中都表现为3：1,长粒性状受1对隐性核基因控制,命名为GL3。用简单重复序列（simple sequence repeat,ssR）分子标记结合群体分组混合分析的方法,将此种基因定位在水稻第3号染色体上SSR标记PSM379和RM16之间,它们的遗传距离分别为4．0cM和11．2cM。     

利用分子标记辅助选择改良珍汕97的稻瘟病抗性

利用回交育种中产生的回交群体,结合前人的研究结果构建了Pil基因区域的局部分子标记连锁图,通过BC1F2家系的接种结果判断其基因型.将Pi1定位在RFLP标记RZ536与SSR标记RM144之间,图距分别为9.7cM、6.8 cM,从而建立了一套完整的以PCR为基础的分子标记辅助选择体系.通过分子标记和抗性验证两种选择方式相结合,经过三代回交将Pi1区段快速导入受体亲本珍汕97B中.在BC3F1中利用15条ISSR引物扩增的167条随机分布在基因组中的多态性带筛选背景,得到4个背景较好的单株.经过纯合筛选及抗性验证后共得到17个带有抗性基因Pi1的改良珍汕97株系.试验表明微卫星标记在正向选择、负向选择及背景选择中都起到极大的作用.     

中国与越南褐飞虱和白背飞虱生物型研究

【目的】监测我国与越南褐飞虱Nilaparvata lugens St?l和白背飞虱Sogatella furcifera Horvath生物型,为抗虫育种工作提供指导。【方法】应用群体集团检测法和蜜露量检测法研究了中国广西、云南、河南、湖南、重庆、贵州和越南河内、河静、顺化、胡志明市和九龙江田间褐飞虱和白背飞虱的致害特性和生物型组成结构。【结果】我国主要稻区(除云南思茅外)和越南中北部的田间褐飞虱以Ⅱ型的比例多,对含Bph1、bph2基因的鉴别品种表现为致害;云南思茅的田间褐飞虱以Ⅱ+Ⅱ型的比例多,对含Bph1、bph2和bph4基因的鉴别品种表现为致害或强致害;越南胡志明市、九龙江的田间褐飞虱以Ⅱ+Ⅱ型的比例多,对含Bph1、bph2、Bph3、bph4基因的鉴别品种主要表现为致害或强致害。我国白背飞虱以Ⅰ型比例较多;越南顺化和河内以Ⅱ型比例多;所有监测点白背飞虱的致害特性总体表现为对含Wph1、Wbph2基因的鉴别品种的致害能力较强,对Wbph3的致害能力表现不一,对含Wph5基因的鉴别品种表现为中等致害。【结论】抗虫育种选择抗源时,不要选含Bph1、bph2基因的水稻品种作为褐飞虱抗源,不要选含基因Wbph1或Wbph2的水稻品种作为白背飞虱抗源。     

水稻OsLecRK1基因介导的抗褐飞虱功能分析

褐飞虱Nilaparvata lugens St(a)l是对水稻最具破坏性的害虫之一,OsLecRK1是水稻Bph3基因簇中对褐飞虱抗性贡献最大的基因.本文对RHTd(含Bph3)等材料进行了褐飞虱抗性评价,克隆并构建了OsLecRK1过量表达突变体水稻,利用该突变体分析了OsLecRK1基因对褐飞虱若虫存活率、若虫发育历期等生物学参数的影响.结果 表明,含Bph3基因水稻RHTd对褐飞虱的抗性明显地强于含Bph1基因水稻Mudgo和bph2基因水稻ASD7,RHTd水稻的褐飞虱受害指数仅为Mudgo和ASD7水稻的53.5％和24.1％.过量表达OsLecRK1基因能显著地增加水稻对褐飞虱的驱避性和抗生性,褐飞虱雌成虫偏好于在野生型水稻上产卵;突变体水稻上的褐飞虱若虫存活率显著地降低,仅为野生型水稻上若虫存活率的75.2％ ～81.8％,且若虫发育历期显著地延长,羽化率和初羽化雌成虫体重均显著地降低;此外,褐飞虱在突变体水稻上取食分泌的蜜露量只有野生型上的40.3％ ～ 60.9％,褐飞虱单雌产卵量只为野生型51％ ～61.2％,卵孵化率只有野生型的52.2％～56.7％,均显著地减少.结果 表明,含Bph3基因水稻RHTd对褐飞虱的抗性明显地高于分别含Bph1、bph2的水稻Mudgo和ASD7;水稻Bph3基因座的OsLecRK1单个基因过量表达即可显著增加水稻对褐飞虱的抗性,OsLecRK1协同影响褐飞虱的多个生物学参数降低褐飞虱的适合度.     

抗褐飞虱水稻品种的培育及其抗性表现

褐飞虱Nilaparvata lugens(Stl)是危害水稻的主要虫害之一,发掘和利用新的抗褐飞虱基因培育抗性品种是目前防治褐飞虱最经济有效的方法之一。抗褐飞虱基因来自药用野生稻的抗虫品种B5,对褐飞虱生物型1和2具有高度抗性,B5携带的抗性基因Bph14被定位在第3染色体上。本研究以B5-10为抗源,以优良杂交稻亲本扬稻6号为受体亲本,通过复交和回交,利用与Bph14紧密连锁的分子标记MRG2329在后代中进行分子标记辅助选择,通过苗期分子标记检测和成株期农艺性状选择,最后育成恢复系R476和杂交组合广两优476。采用苗期群体鉴定技术对R476和广两优476的褐飞虱抗性进行了鉴定,R476和广两优476的抗性水平分别为中抗和中感。广两优476在稻飞虱发生较重的稻田进行试种示范,与对照品种扬两优6号和两优培九相比,广两优476对稻飞虱表现出明显的抗性。研究结果表明在育种过程中利用分子标记辅助选择Bph14基因是培育抗褐飞虱水稻品种的有效途径之一。     

一个水稻卷叶主效QTL的定位及其物理图谱的构建

以水稻平展叶品种奇妙香和中度卷叶品种91SP068组合的F2无性系群体为定位群体,利用微卫星标记(SSR)对卷叶基因进行定位。在第5染色体长臂上定位到1个卷叶主效QTLS(rl8),它来自亲本91SP068,两侧标记为RM6954和RM6841,标记间的遗传距离为3．8cM,rl8距RM6954 1．0cM。所估计的加性效应和显性效应两年间均有所不同,2002年和2003年通过复合区间作图法所估计的加性效应分别为9．61和6．23,显性效应分别为-1．19和-4．44,两年间对表型的贡献率变化在20％～33％。同时,构建了覆盖该QTL区间的物理图谱,两标记间的物理距离为542kb,遗传距离和物理距离之比为144kb／cM。     

Mapping and Marker-assisted Selection of a Brown Planthopper Resistance Gene bph2 in Rice (Oryza sativa L.)

Nilaparvata lugens Stål (brown planthopper, BPH), is one of the major insect pests of rice (Oryza sativa L.) in the temperate rice-growing region. In this study, ASD7 harboring a BPH resistance gene bph2 was crossed to a susceptible cultivar C418, a japonica restorer line. BPH resistance was evaluated using 134 F_2:3 lines derived from the cross between “ASD7” and “C418”. SSR assay and linkage analysis were carried out to detect bph2. As a result, the resistant gene bph2 in ASD7 was successfully mapped between RM7102 and RM463 on the long arm of chromosome 12, with distances of 7.6 cM and 7.2 cM, respectively. Meanwhile, both phenotypic selection and marker-assisted selection (MAS) were conducted in the BC₁F₁ and BC₂F₁ populations. Selection efficiencies of RM7102 and RM463 were determined to be 89.9% and 91.2%, respectively. It would be very beneficial for BPH resistance improvement by using MAS of this gene.     

水稻长穗颈基因eui紧密连锁SSR标记获得

02428h是从半矮秆材料02428体细胞培养后代中发现的隐性高秆突变体, 其株高性状由1对长穗颈基因eui和1对半矮秆基因sd-1共同控制。以02428h与半矮秆材料南京11杂交的F₂为作图群体, 利用Gramene公布的SSR标记和根据NCBI中的BAC序列自己新开发的SSR标记, 将eui基因定位在第5染色体上的RM3673和RM0012之间, 两侧遗传距离分别为0.3 cM和1.0 cM, 为该基因的分子标记辅助选择奠定了基础。     

Molecular mapping and genetic analysis of a rice brown planthopper (Nilaparvata lugens Stål) resistance gene

The brown planthopper (BPH), Nilaparvata lugens St?l, is a serious insect pest of rice (Oryza saliva L.). We have determined the chromosomal location of a BPH resistance gene in rice using SSR and RFLP techniques. A rice line 'B14', derived from the wild rice Oryza latifolia, showed high resistance to BPH. For tagging the resistance gene in 'B14X', an F2 population and a recombinant inbred (RI) population from a cross between Taichung Native 1 and 'B14' were developed and evaluated for BPH resistance. The results showed that a single dominant gene controlled the resistance of 'B14' to BPH. Bulked segregant SSR analysis was employed for identification of DNA markers linked to the resistance gene. From the survey of 302 SSR primer pairs, three SSR (RM335, RM261, RM185) markers linked to the resistance gene were identified. The closest SSR marker RM261 was linked to the resistance gene at a distance of 1.8 cM. Regions surrounding the resistance gene and the SSR markers were examined with additional RFLP markers on chromosome 4 to define the location of the resistance gene. Linkage of RFLP markers C820, R288, C946 with the resistance gene further confirmed its location on the short arm of chromosome 4. Closely linked DNA markers will facilitate selection for resistant lines in breeding programs and provide the basis for map-based cloning of this resistance gene.     

Mapping of a broad-spectrum brown planthopper resistance gene, <Emphasis Type="Italic">Bph3</Emphasis>, on rice chromosome 6

The brown planthopper (BPH) is one of the most destructive insect pests of rice in Thailand. We performed a cluster analysis that revealed the existence of four groups corresponding to the variation of virulence against BPH resistance genes in 45 BPH populations collected in Thailand. Rice cultivars Rathu Heenati and PTB33, which carry Bph3, showed a broad-spectrum resistance against all BPH populations used in this study. The resistant gene Bph3 has been extensively studied and used in rice breeding programs against BPH; however, the chromosomal location of Bph3 in the rice genome has not yet been determined. In this study, a simple sequence repeat (SSR) analysis was performed to identify and localize the Bph3 gene derived from cvs. Rathu Heenati and PTB33. For mapping of the Bph3 locus, we developed two backcross populations, BC₁F₂ and BC₃F₂, from crosses of PTB33 × RD6 and Rathu Heenati × KDML105, respectively, and evaluated these for BPH resistance. Thirty-six polymorphic SSR markers on chromosomes 4, 6 and 10 were used to survey 15 resistant (R) and 15 susceptible (S) individuals from the backcross populations. One SSR marker, RM190, on chromosome 6 was associated with resistance and susceptibility in both backcross populations. Additional SSR markers surrounding the RM190 locus were also examined to define the location of Bph3. Based on the linkage analysis of 208 BC₁F₂ and 333 BC₃F₂ individuals, we were able to map the Bph3 locus between two flanking SSR markers, RM589 and RM588, on the short arm of chromosome 6 within 0.9 and 1.4 cM, respectively. This study confirms both the location of Bph3 and the allelic relationship between Bph3 and bph4 on chromosome 6 that have been previously reported. The tightly linked SSR markers will facilitate marker-assisted gene pyramiding and provide the basis for map-based cloning of the resistant gene.     

Genetic analysis and fine mapping of a rice brown planthopper (Nilaparvata lugens Stål) resistance gene bph19(t)

Genetic analysis and fine mapping of a resistance gene against brown planthopper (BPH) biotype 2 in rice was performed using two F₂ populations derived from two crosses between a resistant indica cultivar (cv.), AS20-1, and two susceptible japonica cvs., Aichi Asahi and Lijiangxintuanheigu. Insect resistance was evaluated using F₁ plants and the two F₂ populations. The results showed that a single recessive gene, tentatively designated as bph19(t), conditioned the resistance in AS20-1. A linkage analysis, mainly employing microsatellite markers, was carried out in the two F₂ populations through bulked segregant analysis and recessive class analysis (RCA), in combination with bioinformatics analysis (BIA). The resistance gene locus bph19(t) was finely mapped to a region of about 1.0 cM on the short arm of chromosome 3, flanked by markers RM6308 and RM3134, where one known marker RM1022, and four new markers, b1, b2, b3 and b4, developed in the present study were co-segregating with the locus. To physically map this locus, the bph19(t)-linked markers were landed on bacterial artificial chromosome or P1 artificial chromosome clones of the reference cv., Nipponbare, released by the International Rice Genome Sequencing Project. Sequence information of these clones was used to construct a physical map of the bph19(t) locus, in silico, by BIA. The bph19(t) locus was physically defined to an interval of about 60 kb. The detailed genetic and physical maps of the bph19(t) locus will facilitate marker-assisted gene pyramiding and cloning.     

萍乡显性核不育水稻育性相关基因的定位和遗传分析

萍乡显性核不育水稻(Pingxiang Dominant Genic Male Sterile Rice,PDGMSR)是在水稻中首次发现的显性核不育材料,其育性由两对显性基因互作控制,一对是萍乡显性核不育基因Ms-p,另一对是显性上位恢复基因(dominant epistatic fertility restorer gene,Rfe)。两者共同存在时显性上位恢复基因能抑制不育基因的表达,从而使育性表现可育。本实验用一个对萍乡显性核不育水稻有恢复能力的水稻品种E823与萍乡显性核不育水稻配制杂交组合,将(萍乡核不育水稻/E823)F2作为定位群体,根据F3株系的育性分离,选择育性分离株系对应F2单株(基因型为Ms-pMs-pRefrfe和Ms-pms-pRferfe)构建可育池,用对应F2株系中的不育单株(基因型为Ms-pMs-prferfe或Ms-pms-prferfe)构建不育池,将显性上位恢复基因Rfe定位在水稻10染色体RM311和RM3152一侧,遗传距离分别为7.9cM和3.6cM。根据已有的Ms-p的定位结果,合成10染色体部分微卫星引物,对不育单株进行分析,发现RM171和RM6745位于Ms-p的两侧,距离分别为0.3cM和3.0cM。根据10染色体的测序结果,将Ms-p界定在约730kb的范围内,并构建了Ms-p的电子重叠群。植物显性核不育的育性恢复机理存在“复等位基因”和“显性上位互作”两种假说,贺浩华等用经典的遗传学方法证明了萍乡显性核不育水稻育性恢复的遗传机理属于“显性上位互作”。理论上认为,确定其遗传机理最为有效的方法是基因定位,如果不育基因和恢复基因位于同一位点,则其遗传机理属于“复等位基因”,否则为“显性上位互作”。本实验将不育基因和恢复基因定位在水稻10染色体不同的位点,用基因定位的方法证实了萍乡显性核不育水稻育性恢复的遗传机理属于“显性上位互作”。     

Molecular mapping of two semidwarf genes in an indica rice variety Aitaiyin3 (Oryza sativa L.)

Genetic analysis established that Aitaiyin3,a dwarf rice variety derived from a semidwarf cultivar Taiyin1,carries two recessive semidwarf genes.By using simple sequence repeat(SSR)markers,we mapped the two semidwarf genes,sd-1 and sd-t2 on chromosomes 1 and 4,respectively.Sd-t2 was thus named because the semidrawf gene sd-t has already been identified from Aitaiyin 2 whose origin could be traced back to Taivin1.The result of the molecular mappingof sd-1 gene revealed it is linked to four SSR markers found on chromosome 1.These markers are:RM297,RM302,RM212,and OSR3 spaced at 4.7 cM,0 cM,0.8cM and 0 cM,respectively.Sd-t2 was found to be located on chromosome 4 using five SSR markers:two markers,SSR332 and RM1305 located proximal to sd-t2 are spaced 11.6 cM,3.8 cM,respectively,while the three distally located primers,RM5633,RM307,and RM401 are separated by distances of 0.4 cM,0.0 cM,and 0.4 cM,respectively.     

Molecular tagging of genes for brown planthopper resistance and earliness introgressed from Oryza australiensis into cultivated rice, O. sativa.

Restriction fragment length polymorphism analysis was carried out to tag the alien genes for brown planthopper (BPH) resistance and earliness introgressed from wild species Oryza australiensis into cultivated rice, O. sativa L. One introgression line (IR65482-4-136-2-2), resistant to biotypes 1, 2, and 3 of BPH and early in flowering, was selected from BC2F4 of the cross between O. sativa (IR31917-45-3-2) and O. australiensis (accession 100882). Recurrent parent, O. australiensis, and introgression line were surveyed for RFLP using probes of chromosomes 10 and 12. Two probes, RG457 and CDO98, detected introgression from O. australiensis. Cosegregation between introgressed characters and molecular markers was studied in F2 derived from the cross between the introgression line and recurrent parent. The gene for BPH resistance is linked with RG457 of chromosome 12 at a distance of 3.68 +/- 1.29 cM, and the gene for earliness is linked with CDO98 of chromosome 10 at a distance of 9.96 +/- 3.28 cM. Such close linkage is useful in marker-based selection while transferring BPH resistance from introgression line into other elite breeding lines. Introgression at the molecular level indicates that the mechanism of alien gene transfer is probably genetic recombination through crossing over rather than substitution of whole or large segment of chromosomes of wild species.