利用分子标记辅助选择改良珍汕97的稻瘟病抗性

利用回交育种中产生的回交群体，结合前人的研究结果构建了Pi1基因区域的局部分子标记连锁图，通过BC1F2家系的接种结果判断其基因型。将Pi1定位在RFLP标记RZ536与SSR标记RM144之间，图距分别为9．7cM、6．8cM，从而建立了一套完整的以PCR为基础的分子标记辅助选择体系。通过分子标记和抗性验证两种选择方式相结合，经过三代回交将Pi1区段快速导入受体亲本珍汕97B中。在BC3F1中利用15条ISSR引物扩增的167条随机分布在基因组中的多态性带筛选背景，得到4个背景较好的单株。经过纯合筛选及抗性验证后共得到17个带有抗性基因Pi1的改良珍汕97株系。试验表明微卫星标记在正向选择、负向选择及背景选择中都起到极大的作用。     

普通野生稻中增产相关QTL的发掘

普通野生稻(Oryza Rufipogon)是重要的遗传资源,发掘其优良等位基因将对水稻遗传改良产生重要影响。文章从以珍汕97为轮回亲本,普通野生稻为供体的BC2F1群体中选择一个与珍汕97表型明显不同的单株BC2F1-15,经过连续自交获得回交重组自交系BC2F5群体。均匀分布于12条染色体的126个多态性SSR(Simplesequence repeats)标记基因型分析,发现BC2F1-15单株在30%的标记位点为杂合基因型;利用该群体共检测到4个抽穗期、3个株高、4个每穗颖花数、2个千粒重和1个单株产量QTL。在第7染色体RM481-RM2区间,检测到抽穗期、每穗颖花数和产量QTL,野生稻等位基因表现增效作用;其他3个每穗颖花数QTL位点,野生稻等位基因也均具有增效作用。结果表明野生稻携带有增产相关的等位基因,这些有利等位基因无疑是水稻遗传改良可资利用的新资源。     

野败型水稻细胞质雄性不育恢复基因Rf-4的分子标记定位

为了用分子标记准确定位野败型水稻细胞质雄性不育恢复基因Rf-4,将日本水稻基因组项目（Rice Genome Program,RGP)构建的水稻遗传连锁图谱第10染色体分子遗传图上的分子标记R1877和G2155之间对应区域YAC物理图上的6个YAC克隆进行了亚克隆,获得119个片段,对这些探针进行多态性探查,获得了2个多态分子标记,用珍汕97A和恢复基因近等基因系的杂种F2分离群体中的117完全不育株进行连锁分析表明,从YAC4892获得的亚克隆Y3－8与Rf－4座位的连锁距离为0．9cM,从YAC4630获得的亚克隆Y1－10与Rf－4座位的连锁距离为3．2cM,根据以上结果把Rf－4座位定位于第10染色体的特定位置,为该基因的分子标记辅助选择和定位克隆打下了基础。     

水稻抗褐飞虱基因bph2的SSR定位和标记辅助选择

利用综合性状较好对褐飞虱敏感的粳稻恢复系C418为父本,以含有bph2基因的抗褐飞虱品种ASD7为母本构建了包含134个F23家系的群体,利用苗期鉴定法对F2：3家系进行抗性鉴定：用SSR标记技术,将bph2基因定位在第12染色体长臂上,标记RM7102和RM463之间,其遗传距离分别为7．6cM和7．2cM。在进行表型选择的同时,利用与bph2基因连锁的SSR标记RM7102和RM463对BC1F1和BC2F1进行了标记辅助选择,选择效率分别为89．9％和91．2％,为培育高抗褐飞虱水稻品种奠定了基础。     

分子标记辅助选择Pi9基因改良籼型三系不育系三香A稻瘟病抗性

以籼稻品系75-1-127作为广谱持久抗稻瘟病基因Pi9的供体亲本,先后以籼型三系保持系三香B及其不育系三香A为受体亲本,利用Pi9基因内共显性InDel标记CoInDF1R1开展分子标记辅助选择连续回交育种,定向改良三香B和三香A的稻瘟病抗性.以三香B、三香A、75-1-127和感病对照CO39为材料,用来自国内外不...     

利用回交法与Wx基因分子标记辅助选择培育糯性小麦

以中国春糯性位点全套近等基因系为研究材料,对小麦Wx基因的6个STS标记和1个CAPS标记进行了筛选。改良PCR扩增条件以及产物检测方式后,从这些标记中筛选出3个标记,包括鉴定Wx-A1、Wx-D1位点的2个共显性STS标记和Wx-B1位点的1个显性STS标记,用于本研究中糯性小麦的分子标记辅助育种。在育种过程中,首先配制全糯材料“98Y1441”与推广品种“川育12”的杂交组合,采用籽粒碘染法从其F2种子中选择全糯基因型个体与回交亲本川育12杂交,如此反复自交、回交,历经数代异地加代繁殖得到BC5F2代回交改良群体。利用上述3个分子标记从该群体中筛选出了8种Wx基因型,经卡方检验,其分离比符合3对基因的分离比例,其中基因型为aabbdd的植株有2株,直链淀粉含量分别为1.81%和0.82%,为全糯小麦;基因型为AAbbdd, aabbDD的部分糯性植株各有1株,直链淀粉含量分别为15.24%和17.57%。研究中获得的BC5 F2代群体的农艺性状接近回交亲本,并明显优于全糯材料“98Y1441”,表明采用回交法与Wx基因分子标记辅助选择相结合,有助于培育高产、优质的全糯和部分糯小麦。     

棉花''晋 A''细胞质雄性不育恢复基因定位

用晋A衍生不育系与恢复系组配的分离群体进行遗传与定位分析,晋A恢复基因在F2和BC1的分离比例分别符合3∶1和1∶1,证明恢复基因由1对显性基因控制.用9个SSR标记和4个STS标记构建长度为82.1 cM的连锁群,恢复基因Rf定位在第19染色体(D08),与最近的标记CM042和CIR179分别相距5.4 cM和10.3 cM.以晋A衍生的7个不育系、4个保持系和10个恢复系对标记进行验证,分别扩增出同样的特异带型,说明与晋A恢复基因紧密连锁的标记可以直接用于晋A恢复系的分子标记辅助选择.     

黄瓜白色果皮基因遗传规律及定位研究

以黄瓜嫩果深绿色果皮自交系1507(P1)和白色果皮自交系1508(P2)为亲本,构建6世代遗传群体(P1、P2、F1、F2、BC1P1、BC1P2),对黄瓜嫩果白色果皮基因(w)进行遗传规律分析和基因定位研究。结果表明,黄瓜白色果皮性状由隐性单基因(w)控制,深绿色对白色为显性。利用F2群体,结合分离群体分组分析法筛选得到了14个与w基因相关的SSR标记,构建了该基因的SSR连锁群,将其定位到黄瓜3号染色体上,两侧的标记为SSR23517和SSR23141,遗传距离分别为4.9cM和1.9cM。侧翼标记之间的物理距离为1 150kb,在该区域中共预测了500个候选基因。该研究对w基因的初步定位,为该基因精细定位及分子标记辅助选择育种奠定了良好的基础。     

家蚕黄血抑制基因的SSR定位

家蚕黄茧性状主要由3个基因控制, 分别是黄血基因(Yellow blood, Y), 黄血抑制基因(Yellow inhibitor, I)和黄茧基因(Out-layer yellow cocoon, C)。I基因阻止类胡萝卜素从中肠上皮细胞到血淋巴的转运, 是天然黄茧形成过程中的重要控制基因。利用家蚕雌性不发生交换的特点, 采用黄血黄茧品系KY和白血白茧品系巴格达特(Ba)组配正反交群体(Ba×KY)×KY和KY×(Ba×KY), 分别记作BC1F和BC1M, 根据已经构建的家蚕SSR分子标记连锁图谱对I基因进行了定位及连锁分析。筛选出3个与I基因连锁的SSR标记。BC1F群中的所有白血个体均表现出与(Ba×KY) F1相同的杂合型带型; 而所有黄血个体带型与亲本KY一致, 为纯合型。利用另一个群体BC1M构建了关于I基因的遗传连锁图, 连锁图的遗传距离为38.4 cM, 与I基因最近的引物为S0904, 图距为7.4 cM。     

家蚕AFLP连锁框架图谱的构建

利用改进的AFLP分子标记方法,对家蚕Bombyx mori回交一代BC1群体进行连锁图谱的构建。经17组AFLP引物的选择性扩增,共得到430个多态位点,卡方检验后有253个为有效位点。利用Mapmaker/Exp (Version 3.0b)软件作连锁分析,其中163个标记分属28个连锁群,连锁群标记数变化范围是2～28个,平均每个连锁群标记数为5.8个,该图覆盖的基因组长度为2.998.9cM(图距单位),连锁群长度变化范围为4.5～652.8 cM,连锁群的平均长度为107.1 cM,平均图距为4.5～36.7 cM。     

Identification and fine mapping of <Emphasis Type="Italic">Pi33</Emphasis>, the rice resistance gene corresponding to the Magnaporthe grisea avirulence gene <Emphasis Type="Italic">ACE1</Emphasis>

Rice blast disease is a major constraint for rice breeding. Nevertheless, the genetic basis of resistance remains poorly understood for most rice varieties, and new resistance genes remain to be identified. We identified the resistance gene corresponding to the cloned avirulence gene ACE1 using pairs of isogenic strains of Magnaporthe grisea differing only by their ACE1 allele. This resistance gene was mapped on the short arm of rice chromosome 8 using progenies from the crosses IR64 (resistant) × Azucena (susceptible) and Azucena × Bala (resistant). The isogenic strains also permitted the detection of this resistance gene in several rice varieties, including the differential isogenic line C101LAC. Allelism tests permitted us to distinguish this gene from two other resistance genes [Pi11 and Pi-29(t)] that are present on the short arm of chromosome 8. Segregation analysis in F₂ populations was in agreement with the existence of a single dominant gene, designated as Pi33. Finally, Pi33 was finely mapped between two molecular markers of the rice genetic map that are separated by a distance of 1.6 cM. Detection of Pi33 in different semi-dwarf indica varieties indicated that this gene could originate from either one or a few varieties.Communicated by D.J. Mackill     

Development and validation of functional marker targeting an InDel in the major rice blast disease resistance gene Pi54 (Pik h )

Rice blast is one of the most devastating diseases affecting the rice crop throughout the world. In molecular breeding for host plant resistance, functional markers are very useful for enhancing the precision and accuracy in marker-assisted selection (MAS) of target gene(s) with minimum effort, time and cost. Pi54 (which was earlier known as Pik ^h ) is one of the major blast resistance genes and has been observed to show resistance against many isolates of the blast pathogen in India. The gene has been cloned through map-based strategy and encodes a nucleotide-binding site?Cleucine-rich repeat (NBS?CLRR) domain-containing protein. In the present study, we carried out allele mining for this gene and identified a 144-bp insertion/deletion (InDel) polymorphism in the exonic region of the gene. A PCR-based co-dominant molecular marker targeting this InDel, named Pi54 MAS, was developed. Pi54 MAS was observed to perfectly co-segregate with blast resistance in a mapping population with no recombinants. Validation of this marker in 105 genotypes which are either susceptible or resistant to rice blast disease showed that the marker is polymorphic in most of the resistant?Csusceptible genotype combinations and is more accurate than the earlier reported markers for Pi54. Hence this functional, co-dominant marker is suggested for routine deployment in MAS of Pi54 in breeding programs.     

抗稻瘟病水稻资源抗性基因Pita、Pib、Pi9以及Pikm的分布研究

利用抗稻瘟病水稻资源品种杂交,聚合多个抗性基因是培育持久抗稻瘟病水稻新品种的主要育种途径.利用分子标记技术对水稻抗性资源进行基因型鉴定是分子辅助聚合育种的基础.通过以亚华种业科学院稻瘟病病圃抗病水稻资源为材料,利用特异性分子标记对Pi9、Pita、Pib以及Pikm基因在水稻抗稻瘟病资源的分布进行了鉴定,初步建立了抗性基因数据库.同时对抗性基因及与抗性反应的相关性进行了探讨,结果表明以Pi9为主效基因,同时聚合Pita和Pib抗性基因能提高持久抗稻瘟病能力.     

分子标记辅助选择改良水稻不育系臻达A及其杂交种的稻瘟病抗性

水稻抗稻瘟病基因Pi25是一个遗传传递能力强的广谱抗性基因。本研究以携带抗稻瘟病基因Pi25的BL27为抗源供体,与优质、配合力强、感稻瘟病的水稻保持系臻达B为受体亲本进行杂交、回交创制水稻抗病保持系新种质,再与臻达A测交和回交进行不育系转育,结合分子标记辅助选择和农艺性状筛选,获得3个抗性基因纯合、农艺性状和开花习性均与臻达A相似的改良不育系株系。利用福建省近年来致病性代表的22个稻瘟病菌株对3个改良不育系及其15个杂交种进行抗性鉴定,3个改良不育系的抗性频率为95.45%~100%,15个杂交种的抗性频率均达75%以上,而原始对照臻达A及其杂交种的抗性频率仅为54.55%和40.91%~63.64%。自然病圃诱发鉴定表明,3个改良不育系的叶瘟和穗颈瘟均为0级,表现高抗,而对照臻达A的叶瘟为5级,穗颈瘟为7级,表现感病;15个杂交种均表现良好的稻瘟病抗性。进一步分析比较15个杂交种的产量、农艺性状和稻米品质表现,结果表明臻达A-Pi25-3改良不育系的综合性状表现最优,继续回交转育,于2015年育成了稻瘟病抗性强、配合力好、群体整齐和性状稳定的不育系,命名为157A。研究表明,抗稻瘟病基因Pi25不仅在水稻不育系臻达A的遗传背景下的抗性表达完全,且在不同水稻恢复系测交种的背景下同样表现出较高水平的抗性,说明抗性基因Pi25对不育系稻瘟病改良的效果明显。创制的新不育系157A的稻瘟病抗性显著提高,还基本保留了原来不育系高配合力等优良特性,为选育高产、优质、抗病杂交稻新品种提供了不育系新种质。     

Identification of SSR markers for a broad-spectrum blast resistance gene Pi20(t) for marker-assisted breeding

The Pi20(t) gene was determined to confer a broad-spectrum resistance against diverse blast pathotypes (races) in China based on inoculation experiments utilizing 160 Chinese Magnaporthe oryzae (formerly Magnaporthe grisea) isolates, among which isolate 98095 can specifically differentiate the Pi20(t) gene present in cv. IR24. Two flanking and three co-segregating simple sequence repeat (SSR) markers for Pi20(t), located near the centromere region of chromosome 12, were identified using 526 extremely susceptible F₂ plants derived from a cross of Asominori, an extremely susceptible cultivar, with resistant cultivar IR24. The SSR OSR32 was mapped at a distance of 0.2 cM from Pi20(t), and the SSR RM28050 was mapped to the other side of Pi20(t) at a distance of 0.4 cM. The other three SSR markers, RM1337, RM5364 and RM7102, co-segregated with Pi20(t). RM1337 and RM5364 were found to be reliable markers of resistance conditioned by Pi20(t) in a wide range of elite rice germplasm in China. As such, they are useful tags in marker-assisted rice breeding programs aimed at incorporating Pi20(t) into advanced rice breeding lines and, ultimately, at obtaining a durable and broad spectrum of resistance to M. oryaze. Wei Li and Cailin Lei contributed equally to this work.     

A new AOX homologous gene OsIM1 from rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L.) with an alternative splicing mechanism under salt stress

"Zhenshan 97" is the female parent of a number of widely used hybrids for rice production in China. However, this line is of poor quality because of a high amylose content (AC), a hard gel consistency (GC) and a low gelatinization temperature (GT), together with a chalky endosperm. It had been determined that the three traits for cooking and eating quality, AC, GC and GT, are controlled by the Waxy locus and/or the tightly linked genomic region. In this study we improved the eating and cooking quality of Zhenshan 97 by introgressing the Waxy gene region from Minghui 63 (wx-MH), a restorer line, that has medium AC, soft GC and high GT. The wx-MH fragment was transferred to Zhenshan 97B by three backcrosses and one selfing, then from Zhenshan 97B to Zhenshan 97A by a cross and a backcross. Molecular marker-assisted selection was applied in the series to select for individuals carrying wx-MH, to identify recombination between the Waxy and flanking markers, and also to recover the genetic background of the recurrent parent. According to the marker genotypes, the improved versions of Zhenshan 97B and Zhenshan 97A, or Zhenshan 97B(wx-MH) and Zhenshan 97A(wx-MH), were the same as the originals except for the Waxy region of less than 6.1 cM in length. The selected lines and their hybrids with Minghui 63, or Shanyou 63(wx-MH), showed a reduced AC and an increased GC and GT, coupled with a reduced grain opacity. Field examinations of agronomic performance revealed that Zhenshan 97B(wx-MH) and Shanyou 63(wx-MH) were essentially the same as the originals except for a significant decrease in grain weight. The simultaneous improvement of AC, GA, GT and opacity, indicated that the Waxy region had major effects on the four quality traits. The improved versions of Zhenshan 97 A and B should be immediately useful in hybrid rice production.     

水稻抗稻瘟病基因Pi-2(t)物理图谱的构建

应用ＢＡＣ文库,采用基于分子标记的染色体着陆（ｍａｒｋｅｒ－ｂａｓｅｄ ｃｈｒｏｍｏｓｏｍｅ ｌａｎｄｉｎｇ）和染色体步查（ｃｈｒｏｍｏｓｏｍｅ ｗａｌｋｉｎｇ）等手段,建立了包含有裟抗稻瘟病基因Ｐｉ－２（ｔ）的物理图谱,该物理图谱由２２个ＢＡＣ克隆组成,遗传跨度８ｃＭ,而物理距离为９２５ｋｂ,该物理图谱的构建不仅为进一步分离和克隆该基因打下了基础,同时也可为分子标记辅助选择育种选择抗稻瘟病新材料     

小麦抗条锈基因Yr69的连锁标记开发

抗条锈病基因Yr69对我国小麦条锈菌(Puccinia striiformis f.sp.tritici)小种具有广谱抗性,在小麦抗条锈病育种中具有重要价值.为提高分子标记辅助选择育种的效率,加快Yr69在小麦抗病育种中的应用,本研究利用条锈菌小种CYR34对包含340个小麦家系的'Taichung29/CH7086'...     

水稻中大麦Mlo和玉米Hm1抗病基因同源序列的分析和定位

大麦抗病基因Mlo和玉米抗病基因Hm1编码的产物不具有绝大多数植物抗病基因产物所含有的保守结构域。这两个抗病基因的作用机理也不符合基因对基因学说。从水稻中分离克隆了Mlo基因的同源序列OsMlo-1和玉米Hm1基因的同源序列DFR－1。利用水稻分子标记遗传连锁图,将OsMlo-1定位于水稻第六染色体的两俱RZ667和RG424之间;Osmlo-1距离这两个分子标记分别为20．6和6．0cM(centi-Morgan)。将DFR－1定位于水稻第一染色体两个分子标记R2635和RG462之间;DFR－1距离这两个分子标记分别为11．3和23．9cM。参照已发表的水稻分子标记连锁图,发现OsMlo-1和DFR－1的染色体位点分别与两个报道的水稻抗稻瘟病数量性状位点（QTL）有较好的对应关系。结果提示,水稻中与大麦Mlo 和玉米Hml同源的基因可能也参于抗病反应的调控。