1株拮抗水稻纹枯病菌鼠乳杆菌的筛选与鉴定

采用平板对峙法从浙江省金华市水稻田土壤中筛选获得1株拮抗水稻纹枯病菌的细菌QT-0304菌株,最大拮抗带宽达到20 mm。根据形态特征、生理生化特征、16S rRNA基因比对及进化树构树分析,鉴定QT-0304菌株为鼠乳杆菌（Lactobacillus murinus）。抗菌谱实验结果表明：QT-0304菌株对苹果腐烂病菌（Valsa mali）和杨树溃疡病病菌（ Botryosphaeria dothidea）均有较好的抑制作用,拮抗带宽分别达到34.5 mm和23.0 mm。     

一株耐盐细菌的16S rRNA基因序列分析

从舟山群岛滩涂土壤中获得了海水和底泥样品,并从中提取到了一株耐盐细菌,通过用不同盐浓度的培养基培养,挑取单菌落,反复划线纯化,得到了耐盐菌的单菌落。通过菌株基因组DNA的提取、菌株的抗性实验、质粒的提取、16S rRNA的PCR扩增及克隆、16S rRNA的全序列分析等手段,对该菌株的16S rRNA的基因序列进行了研究。     

鳜源致病性荧光假单菌的分离与鉴定

为确定导致鳜（Siniperca chuatsi）细菌性感染死亡的病原,从患病濒死的鳜肝中分离出一株优势菌B01,经人工回感实验确定其分离菌的致病性,并利用VITEK-2全自动微生物鉴定仪及16S rRNA序列分析对纯培养细菌进行鉴定。此外,对分离的菌株进行药敏实验。研究结果表明,菌株B01对鳜鱼具有致病性。经VITEK-2全自动微生物鉴定仪鉴定菌株B01为荧光假单胞菌（Pseudomonas fluorescens）（表1）,并在紫外灯可以产生荧光（图1）。进一步的16S rRNA基因序列和系统发育树分析表明,该菌与荧光假单胞菌同源性达到了97%以上,并和（图2）。药物敏感性实验结果显示,该分离株对恩诺沙星、诺氟沙星、链霉素和四环素药物等6种药物高度敏感（表2）。     

黄瓜枯萎病拮抗放线菌的筛选、鉴定及发酵条件优化

【背景】黄瓜枯萎病是由尖孢镰刀菌(Fusarium oxysporum f. sp. cucumerinum)黄瓜专化型引起的土传真菌性病害,严重制约着黄瓜产业的发展。【目的】从河西走廊敦煌地区盐碱土壤中分离筛选出一株对黄瓜枯萎病病菌有良好拮抗效果的放线菌菌株,探究其分类地位及其最优发酵条件。【方法】采用稀释平板涂布法分离放线菌,平板对峙法、抑制菌丝生长速率法筛选拮抗菌株,通过培养特征、生理生化试验及16SrRNA基因序列分析确定其分类地位,利用单因素试验和正交试验方法确定其最优发酵配方及培养条件。【结果】菌株16-3-10鉴定为链霉菌属(Streptomyces sp.)菌株,最优发酵配方(g/L):小米10.0,乳糖20.0,蛋白胨1.0,NaCl 5.0,CaCO3 6.0,最优发酵条件:培养温度28°C,装瓶量50/250 mL,培养3 d,起始pH 10.0,抑菌率达82.50%,比优化前增加153.43%。【结论】菌株16-3-10对黄瓜枯萎病病菌具有显著的拮抗效果,有较好的应用前景。     

一株拮抗香蕉枯萎病的内生细菌的分离及其几丁质酶基因信号肽的分泌活性分析

目的：旨在分离并选择一株香蕉内生细菌作为内生基因工程生防菌,并克隆其几丁质酶基因的信号肽序列。方法：从香蕉植株杆下部分离并选择了一株拮抗香蕉枯萎病且具有分泌几丁质酶能力的内生细菌,对该菌株进行了形态观察、生理生化测定和16S rDNA序列分析,克隆了其几丁质酶基因的编码序列并预测了其信号肽,构建了含有信号肽和不含信号肽的几丁质酶的表达菌株BL-chi1和BL-chi2。结果：结合形态观察、生理生化特征和16S rDNA序列比对分析确定该菌株为Klebsiella属,将该菌株命名为KKWB 5;BL-chi1和BL-chi2经IPTG诱导后,均表达了与预期蛋白大小一致的蛋白,同时BL-chi1诱导后的培养基上清中出现一条约45kDa的条带,而BL-chi2和空载体的BL-pET22b诱导后的培养基上清中均无此条带;几丁质水解试验发现,BL-chi1诱导后的培养基上清中的蛋白经浓缩和纯化后都能在几丁质平板上形成透明水解圈。结论：该几丁质酶的信号肽能被BL21（DE3）所识别,将几丁质酶分泌到培养基中,并且分泌的几丁质酶具有水解几丁质的生物学活性。内生菌KKWB-5的分离及其几丁质酶分泌信号肽序列的克隆为进一步构建内生工程菌来防治香蕉枯萎病打下了基础。     

一株耐热纤维素酶产生菌的筛选及酶学特性

从辽宁鞍山汤岗子温泉附近土样中分离得到能产生纤维素酶的真菌,通过形态观察和18S rRNA序列分析,该菌株为蒙昧的散囊菌纲（Uncultured Eurotiomycetes）。实验中对酶学性质进行了检验,测定得出该菌株产生的纤维素酶最适温度为65℃,在温度高达75℃仍能保持70%的酶活力,它的最适pH值为6.5,pH在5～8的范围内酶活力保持稳定。实验表明该菌株所产纤维素酶具有较高的pH稳定性和温度稳定性,值得对该酶进行进一步的研究。     

拮抗枯草芽孢杆菌KC-5的分离鉴定及其发酵优化

为了筛选出对植物病原菌具有拮抗作用的生物防治细菌,采用平板对峙法从蔬菜根际土壤中分离获得一株对多种病原真菌具有抑制作用的枯草芽孢杆菌,并对抑制后的病原菌菌丝进行了观察,结果表明该菌株对尖孢镰刀菌、串珠镰刀菌、层出镰刀菌以及腐皮镰刀菌均具有抑菌活性。通过形态特征、生理生化特征及16S rRNA序列分析,将该菌株鉴定为枯草芽孢杆菌(Bacillus subtilis),并对其发酵培养基进行了优化。     

一株抗真菌内生多粘芽孢杆菌的分离鉴定及对水稻恶苗病菌的抑制作用

目的：从番茄叶片中筛选具广谱抑真菌活性的拮抗内生细菌,研究其对水稻恶苗病菌的抑制作用。方法：采用对峙培养法筛选拮抗内生细菌,根据菌株形态、生理生化特性结合16S rRNA基因序列分析鉴定菌株;采用硫酸铵沉淀法提取抗菌粗蛋白,研究其对水稻恶苗病菌菌丝生长和孢子萌发的影响。结果：从番茄叶片中筛选到一株抗真菌内生多粘芽孢杆菌（Paenibacillus polymyxa）SD-6,该菌株具有广谱抑菌活性,对供试的13种植物病原真菌均具较强的抑制作用;该菌株产生的抗菌粗蛋白能够显著抑制水稻恶苗病菌菌丝生长和孢子萌发,并能导致萌发孢子畸形和破裂。结论：从番茄叶片中分离到一株能产生抗真菌蛋白并具有广谱高效抑真菌作用的内生多粘芽孢杆菌,该菌株及其抗菌蛋白具有防治水稻恶苗病的潜力。     

利用16S rRNA基因同源性分析鉴定两株明串珠菌

从酸马奶中分离出2株明串珠菌KLDS 5.0301和KLDS 5.0302,对2株菌的16S rRNA基因经PCR扩增测序,将测序结果同该属内菌株的16S rRNA序列作多序列比较,并建立明串珠菌属的系统发育树.结果表明,KLDS 5.0301的16S rRNA序列同L. garlicum的同源性百分比为100%.KLDS 5.0302的16S rRNA序列同L.mesenteroides LM2菌株的16S rRNA序列的同源性百分比为99.9%.根据系统发育树的结果,将KLDS5.0301鉴定为L.garlicum,KLDS 5.0302鉴定为L.mesenteroides.菌株KLDS 5.0301和KLDS 5.0302的16SrRNA序列已经在GeneBank申请国际序列注册号,分别为DQ239691和DQ297412.     

我国亚热带地区豌豆根瘤菌遗传多样性的研究

利用16S rRNA PCR-RFLP,16S rRNA基因序列分析以及16S-23S rRNA IGS PCR-RFLP技术对分离自我国江苏盐城、浙江温州、湖北仙桃及重庆等亚热带地区的42株豌豆根瘤菌（Rhizobium leguminosarum）进行了群体遗传多样性的研究．16S rRNA PCR-RFLP分析以及16S rRNA基因序列分析结果表明：所有供试豌豆根瘤菌可分为两个类群,类群1包括XtP1在内的40株豌豆根瘤菌和尺．leguminosarum USDA2370,为优势种群,占供试菌株的97％;类群2由WzP3和WzP15组成,与Rhizobium etli CFN42相近．16S-23S rRNA IGS PCR-RFLP研究结果表明：所有供试菌株分为18个基因型,在91％的相似性上分为4个类群．其中群Ⅰ与R．leguminosarum USDA2370聚在一起．群Ⅱ仅包括菌株YcP2,YcP3和CqP7等3个菌株．群Ⅲ的菌株分布较广,占供试菌株的优势．群Ⅳ由WzP3和WzP15两个菌株及R．etli CFN42组成．RAPD将供试菌株分为9个群,其中类群Ⅳ仅包括菌株YcP2,群Ⅴ和Ⅸ分别来自温州和仙桃．该结果表明,供试菌株的分类具有明显的地域特征．     

Phylogenetic analysis of manganese-oxidizing fungi isolated from manganese-rich aquatic environments in Hokkaido, Japan

Three strains of Mn-oxidizing fungi were isolated from manganese-rich aquatic environments: sediment in a stream (Komanoyu) in Mori-machi and inflow to an artificial wetland in Kaminokuni-cho, Hokkaido, Japan. The characteristics of each strain were then established. Genetic analysis based on the ribosomal RNA (rRNA) gene was performed to clarify their classification. The sequences of the 18S rRNA and internal transcribed spacer (ITS1)-5.8S rRNA-ITS2 genes showed that all three strains are Ascomycetes. Based on its morphology, it seems probable that the KY-1 strain from Mori-machi belongs to the genus Phoma or Ampelomyces. The phylogenetic analysis indicates that this strain belongs to Phoma rather than Ampelomyces. Morphological identification of WL-1 and WL-2 strains from Kaminokuni-cho was impossible because of the lack of a sexual stage and specific organs. Phylogenetic analysis of the sequence in the ITS1-5.8S rRNA-ITS2 gene suggests that the WL-1 strain corresponds to Paraconyothyrium sporulosum and that WL-2 also belongs to the genus Paraconiothyrium. Because the ability to oxidize Mn has not been evaluated for most species of Phoma or Paraconiothyrium (Coniothyrium), further study is needed to confirm the status of these three strains.     

药用植物内生放线菌的分离、筛选及活性菌株YIM 61470鉴定

从云南西双版纳热带雨林多种药用植物中分离到272株内生放线菌,活性筛选表明 146株菌的发酵产物具有抗菌活性,其中94株菌具有拮抗病原细菌活性,127株菌具有抑制病原真菌的功能.分离菌株YIM 61470具有广谱抗菌活性,通过形态特征、培养特征、生理生化特征、细胞化学分类特征和基于16S rRNA基因序列的相似性分析等研究,菌株YIM 61470被鉴定为链霉菌属(Streptomyces)氢化链霉菌(S.llydrogenans)的一个菌株.     

Phylogenetic position of an arbuscular mycorrhizal fungus,Acaulospora gerdemannii, and its synanamorphGlomus leptotichum, based upon 18S rRNA gene sequence

We examined the phylogenetic position of an arbuscular mycorrhizal fungus which produces two types of spore,Acaulospora gerdemannii andGlomus leptotichum, based upon the DNA sequence of the 18S rRNA gene. DNA was extracted separately from bothGlomus-like orAcaulospora-like spores and partial 5′-terminus segments of 18S rRNA gene were amplified by the PCR method. Several clones derived from each spore type were sequenced and compared. The sequences from both spore types agreed well, confirming that these morphologically different spores were formed by the same fungus. Nucleotide substitutions were found among several clones, suggesting polymorphism of the rRNA gene in glomalean fungi. Further phylogenetic analysis based upon the whole sequence of the 18S rRNA gene showed thatA. gerdemannii may be within the order Glomales but is far from the fungi that have been analyzed and probably should be in a new family.     

Genetic Characterization of Clinical Acanthamoeba Isolates from Japan using Nuclear and Mitochondrial Small Subunit Ribosomal RNA

Because of an increased number of Acanthamoeba keratitis (AK) along with associated disease burdens, medical professionals have become more aware of this pathogen in recent years. In this study, by analyzing both the nuclear 18S small subunit ribosomal RNA (18S rRNA) and mitochondrial 16S rRNA gene loci, 27 clinical Acanthamoeba strains that caused AK in Japan were classified into 3 genotypes, T3 (3 strains), T4 (23 strains), and T5 (one strain). Most haplotypes were identical to the reference haplotypes reported from all over the world, and thus no specificity of the haplotype distribution in Japan was found. The T4 sub-genotype analysis using the 16S rRNA gene locus also revealed a clear sub-conformation within the T4 cluster, and lead to the recognition of a new sub-genotype T4i, in addition to the previously reported sub-genotypes T4a-T4h. Furthermore, 9 out of 23 strains in the T4 genotype were identified to a specific haplotype ({"type":"entrez-nucleotide","attrs":{"text":"AF479533","term_id":"28194589","term_text":"AF479533"}}AF479533), which seems to be a causal haplotype of AK. While heterozygous nuclear haplotypes were observed from 2 strains, the mitochondrial haplotypes were homozygous as T4 genotype in the both strains, and suggested a possibility of nuclear hybridization (mating reproduction) between different strains in Acanthamoeba. The nuclear 18S rRNA gene and mitochondrial 16S rRNA gene loci of Acanthamoeba spp. possess different unique characteristics usable for the genotyping analyses, and those specific features could contribute to the establishment of molecular taxonomy for the species complex of Acanthamoeba.     

Fragmentation heterogeneity of 23S ribosomal RNA in Haemophilus species

The fragmentation of 23S rRNA of 22 Haemophilus influenzae strains and eight strains belonging to other Haemophilus species was investigated. Instead of intact molecules, the 23S rRNA molecules were found to be cleaved into two to five smaller conserved fragments in most strains examined, especially in H. influenzae type b (5/6) and nontypeable strains (5/5). One or two conserved potential cleavage sites were identified by PCR analysis of the strains showing a fragmented 23S rRNA pattern. The relevant nucleotide sequences were determined and compared to H. influenzae Rd, which contains intact 23S rRNA molecules. An identical 112 bp long intervening sequence (IVS) at position 542 and a conserved 121–123 bp IVS sequence at position 1171 were found in two H. influenzae type b strains and one nontypeable strain. Among the strains with fragmented 23S rRNA, nearly half showed a heterogeneous cleavage pattern due to the dispersion of IVSs among different 23S rRNA operons. The localization of the conserved H. influenzae IVSs coincided well with the extensively studied IVSs among other bacteria, but differed in nucleotide sequence from any other reported IVSs. Therefore, the IVSs of Haemophilus 23S rRNA may originate from a common source that is independent of other bacteria.     

Complete nucleotide sequence of mouse 18 S rRNA gene: comparison with other available homologs

We present the complete sequence of mouse 18 S rRNA. As indicated by comparison with yeast, Xenopus and rat, the conservation of eukaryotic 18 S rRNA sequences is extensive. However, this conservation is far from being uniform along the molecule: most of the base changes and the size differences between species are concentrated at specific locations. Two distinct classes of divergent traces can be detected which differ markedly in their rates of nucleotide substitution during evolution, and should prove valuable in additional comparative analyses, both for eukaryotic taxonomy and for rRNA higher order organization. Mouse and rat 18 S rRNA sequences differ by only 14 point changes over the 1869 nucleotides of the molecule.     

γ-亚麻酸产生菌Mucor sp．EIM-10的筛选及分子鉴定

为了获得高产γ-亚麻酸（γ-linolenic acid,GLA）的菌株,利用苏丹黑染色法筛选获得1株GLA产生菌EIM-10,通过摇瓶培养,其生物量可达11．882g／L,菌丝体油脂含量可达18．86％。气相色谱-质谱（GC—MS）分析表明其γ-亚麻酸质量分数（占总脂肪酸）高达27．68％。为进一步鉴定该菌株,克隆测定了该菌18SrRNA基因序列,并对其进行系统进化树分析,结果表明该菌属于毛霉属,与Mucor racemosus、Mucor plumbeus、Mucor ramosissimus与Mucor circinelloides同属一个分支。     

产β-甘露聚糖酶Aspergillus sp. LQ21的分离、鉴定及发酵条件的研究

β-甘露聚糖酶是一类能够水解甘露聚糖、葡甘露聚糖、半乳甘露聚糖的半纤维素酶类,广泛存在于动植物和微生物中,此酶在食品、医药、饲料、造纸、石油等方面已得到广泛应用;近年来,其作为食品和饲料添加剂方面倍受关注。对采自土壤和树皮的样品通过富集培养、平板初筛和摇瓶复筛,得到1株具产β-甘露聚糖酶能力的曲霉属菌株LQ21,结合形态特征、培养特征及18S rRNA基因序列分析,将该菌株鉴定为Aspergillussp.真菌。考察了培养时间、起始pH、培养温度、碳源和氮源对该菌株产酶的影响。初步确定了其最适产酶培养基组成:魔芋粉0.5%,蛋白胨1%,NaNO30.2%,K2HPO40.1%,KCl 0.05%,MgSO4.7H2O 0.05%,FeSO4.7H2O 0.001%;最适培养条件:初始pH4.5,温度35℃,转速200 r/min,培养60 h发酵液上清中酶活达到最高。     

Phylogeny of parasitiform mites (Acari) based on rRNA

Acari (mites and ticks) form one the most diverse lineages of arthropods, but basal relationships in the group are still poorly understood. The current study addresses this issue for one of its two main lineages, the order Parasitiformes. Relationships are examined at the subordinal and infraordinal level using complete 18S and partial 28S nuclear rRNA sequence data. Most currently recognized lineages are recovered with good support, suggesting that nuclear rRNA, and specifically 18S rRNA, is very well suited for analyzing relationships at this level in this lineage. These results were found despite quite variable rates of sequence evolution, with rates "ratcheting up" from relatively low in most non-mite arachnid lineages, to intermediate in Pseudoscorpiones, the mite order Acariformes, and the parasitiform suborders Opilioacarida, Holothyrida, and Ixodida, to high in the parasitiform suborder Mesostigmata. The most species rich mesostigmatid infraorder, Dermanyssina, shows huge distances to the outgroups, but remarkably low within-group divergence in nuclear rRNA. This suggests the possibility of a relatively recent origin of this lineage.