紫膜Langmuir-Blodgett膜的光电压

八十年代生物分子电子学和生物计算机研究的兴起,嗜盐菌紫膜蛋白菌紫质由于其结构稳定,当受到光照时,能发生同素异构变化,具有光色互变和光驱动质子泵功能、双稳态特性以及皮秒到毫秒级的光电响应特性,使其成为目前国内外关注的研究生物分子电子器件的理想材料之一,应用前途是发展生物分子器件和生物芯片等。由于紫膜具有不对称性而菌紫质的光驱动质子泵具有方向性,因而必须有序组装而且可以有序组装。紫膜     

分子系统学在微体古生物及相关领域中的应用

核酸（ＤＮＡ和ＲＮＡ）和蛋白等生物大分子（尤其是它们的序列资料）可作为重要的生物性状用于系统分类和演化等主题的研究。相对于形态学性状而言,分子性状不仅是前者的补充,而且具有许多前者无法比拟的优点;比如ＤＮＡ作为遗传信息的直接载体能较准确地反映生物类群之间的系统发生关系、信息量巨大、易于定量化和进行计算机分析等等。分子古生物研究包含两个方面：一、发掘化石生物分子,以提供历史生物界演化过程中的直接遗传学证据以及检验分子演化速率等方面的独特数据;二、利用现代分子生物学数据,探讨化石生物界的系统发生问题。上述两个研究方向均已成为当今演化生物学领域的热点。有孔虫等具有重要化石记录的微体生物的分子系统学研究已经开始。随着现生的和化石的生物分子资料的逐渐积累,预期在不久的将来,分子资料将成为微体古生物研究中不可缺少的重要数据之一。     

DNA-金属纳米材料在分子识别和药物递送中的应用

分子识别和药物递送对疾病的早期诊断和靶向治疗至关重要。DNA作为一种天然纳米分子，具有良好的生物相容性、分子识别性及序列可编程性等特点，因此在生物医学研究中受到广泛关注。然而，DNA纳米材料存在依赖于光响应系统且不能穿透细胞膜等缺点，导致单独使用无法满足实际应用的需求。近年来，涌现出大量DNA-金属纳米材料，这些复合材料具有光化学特性、组织穿透能力和药物装载能力等功能，克服了单一材料的缺陷，在生物传感、生物成像和药物靶向递送中表现出巨大的应用潜力。本文集中于3种近年热门的DNA-金属纳米材料（DNA-铜纳米材料、DNA-上转换纳米材料、DNA-金属有机框架纳米材料），依据DNA与各金属纳米材料的结合方式进行合理分类，介绍其在生物传感、生物成像和药物递送中的最新应用进展，并对未来发展方向进行了展望。     

分子印迹技术用于生物大分子的识别

分子印迹技术是一种人工合成具有分子识别功能的介质的一种新技术,近年来在许多领域都得到很大的发展。本文介绍了分子印迹技术的发展现状,尤其对生物大分子的分子印迹技术进行了详细论述,对生物大分子印迹采用的功能单体、印迹分子的种类、印迹的方法、印迹的机理、存在的问题和应用的前景等分别进行了讨论。     

MST技术在生命科学中的应用进展

在生命科学领域中,生物分子间的相互作用具有非常重要的作用。通过分子间相互作用分析不仅可阐明细胞生物学事件,而且为疾病发生机制和药物发现提供基础。MST技术是一种基于检测在温度梯度中的生物分子电泳迁移率的变化而检测生物分子间结合、解离过程,获取分子间相互作用的模式和动力学常数等方面信息的新技术,是近年来发展的研究生物分子相互作用的强有力工具,已广泛应用于生命科学领域研究。本文综述了MST的技术原理、分析方法及其在生命科学领域的应用进展。     

生物分子网络弹性研究进展

弹性是生物分子网络重要且基础的属性之一,一方面弹性赋予生物分子网络抵抗内部噪声与环境干扰并维持其自身基本功能的能力,另一方面,弹性为网络状态的恢复制造了阻力。生物分子网络弹性研究试图回答如下3个问题：a. 生物分子网络弹性的产生机理是什么？b. 弹性影响下生物分子网络的状态如何发生转移？c. 如何预测生物网络状态转换临界点,以防止系统向不理想的状态演化？因此,研究生物分子网络弹性有助于理解生物系统内部运作机理,同时对诸如疾病发生临界点预测、生物系统状态逆转等临床应用具有重要的指导意义。鉴于此,本文主要针对以上生物分子网络弹性领域的3个热点研究问题,在研究方法和生物学应用上进行了系统地综述,并对未来生物分子网络弹性的研究方向进行了展望。     

吲哚的微生物代谢及其作为新型信号分子的研究进展

吲哚,又称2,3-苯并吡咯,广泛应用于化工、医药、染料等行业,是工业上重要的前体物质,但其释放到环境中也是一种典型的氮杂环污染物。同时,作为一种常见的微生物代谢产物,自然界中无时无刻不发生着吲哚的合成—转化—降解过程。吲哚对微生物生物膜的形成、运动能力、毒性、质粒稳定性及抗生素抗性等多种生物功能有显著影响。因此,吲哚也被认为是新型且具有多功能的种间及跨界信号分子,在微生物生理学和动物行为学等领域发挥了重要作用。研究微生物介导的吲哚代谢机制,阐明其生物学功能的基础,是揭示吲哚在自然环境中的行为归趋和生态学意义的关键。本文系统地总结吲哚代谢的微生物资源及途径,介绍其作为信号分子的重要功能,并对有关吲哚-微生物相互作用的研究进行总结,以期为揭示复杂环境中吲哚生物代谢机制提供重要的理论参考。     

生物分子自组装

分子自组装是一种普遍存在于生命体系中的现象,是生命科学最本质的内容之一。开展分子自组装的研究具有重要意义,有助于人们从分子水平上认识自然界中生命形成和演变的过程,并为人们提供新的思路,开展生物医学基础研究、新材料合成及分子器件研制等。该文介绍了自组装的基本含义,对分子自组装技术在生物材料、生物分子器件研究方面的进展作了综述。     

DNA计算机的分子生物学研究进展

DNA(脱氧核糖核酸)计算机研究是一个新领域。从字面上看,它既包含DNA研究也包含计算机的研究,因而也包含DNA技术与计算机技术如何交融的研究。1994年,Adleman在Science上报道了首例DNA计算的研究结果;2001年,Benenson等在Nature报道了一种由DNA分子和相应的酶分子构成的、有图灵机功能的可程序试管型DNA计算机,标志着DNA计算机研究的重大进展。DNA计算机最大的特点是超大规模的并行运算能力和潜在的巨大的数据储存能力。目前DNA计算机研究已涉及许多领域,包括生物学、数学、物理、化学、计算机科学和自动化工程等具体应用,是计算概念上的一次革命。DNA计算机的研究大大促进了DNA分子操作技术尤其是在纳米尺度下操作DNA分子的研究速度。从DNA计算机的基本原理、应用形式、与基因组学研究的重要关系等方面总结和评述了相关研究进展。     

烟粉虱生物型研究进展

烟粉虱B em isia tabaci(G ennad ius)是一种取食植物汁液的重要农业害虫,同时也是许多植物病毒最重要的传播介体之一。烟粉虱被认为是由许多具有明显遗传分化的不同种群即生物型组成的复合种,其中B型烟粉虱是一种入侵性最强的生物型,几乎在世界各地均有分布。由于不同生物型的烟粉虱在寄主范围、传毒能力、地理分布、抗药性等许多生物学方面存在差异,因此对烟粉虱生物型的鉴定及其遗传分化研究对于该害虫的可持续控制具有重要的指导意义。烟粉虱生物型的鉴定方法包括生物学鉴定、酶谱鉴定以及分子标记鉴定的方法,其中使用的分子标记包括RAPD、AFLP、rDNA-ITS1、m tDNA CO I以及SSR等标记。目前,不同生物型的烟粉虱尤其B型烟粉虱的分类地位仍然存在争议。介绍了不同生物型烟粉虱的生物学差异、鉴定方法及其遗传分化研究的最新进展,同时探讨了不同生物型烟粉虱的分类地位和研究方向。     

Components,processes and consequences of biotic homogenization: A review

Among the major changes induced by human beings, biotic homogenization is gaining popularity at regional as well as global level. Biotic homogenization is a multifaceted process which results from species extinction, introduction and environmental modification often induced by human beings. This human mediated introduction of alien species and the extirpation of native species, either independently or in combine have caused loss of taxonomic regional distinctiveness among formerly disparate faunas and floras. Ample evidence reveals that extent of homogenization differed between various ecosystems and taxa, as well as in different regions. Although biotic homogenization leads to increase in species richness at local level but causes loss of diversity at global level (i.e., paradox of gaining species but loosing diversity). Potentially biotic homogenization could affect any of the many processes in communities that vary in space and time, such as spatial subsidies and food-web dynamics, and thereby have cascading effects elsewhere on the landscape. Biotic homogenization does have relevance to conservation as it has utility in reserve selection and management. Current knowledge pertaining to patterns, mechanisms and implications of biotic homogenization is highly variable across taxonomic groups, but in general is incomplete. This article is an attempt to review literature pertaining to patterns, mechanisms and implications of biotic homogenization.     

Biotic resistance buffers the effects of nutrient enrichment on the success of a highly invasive aquatic plant

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Using dragonflies to monitor and prioritize lotic systems: a South African perspective

The ever-worsening condition of streams due to local, regional, and global demands on water has resulted in the development of increasingly streamlined, rapid assessment methods using macroinvertebrates. Biotic indices in particular are versatile and robust, although not always easy to use. For example, the family-level South African Scoring System is an effective water quality measure, but is time-consuming and requires high-level expert training. The index could be used alongside the species-level Dragonfly Biotic Index (DBI), originally developed for monitoring habitat integrity, with which it is significantly and strongly correlated. We review here the relevant biotic indices in stream biomonitoring and their advantages and disadvantages, and present a new extension of the DBI, the Habitat Condition Scale (HCS). The HCS enables comparison and ranking of sites in terms of their habitat condition. Indeed, the DBI is a very flexible index, having been used in site selection and prioritization for conservation, as well as the measurement of habitat recovery. The theoretical framework behind the index demonstrates the potential of the index to track biotic changes due to climate change. The index could also be easily adapted for use in other biogeographical regions, given that species distributions, threat levels and sensitivities are well-known, and that there is an adequate number of endemic species. However, like all benthic macroinvertebrate indices, the DBI cannot always identify exactly which in-water impacts have an effect and to what extent. The real power of the DBI lies in being able to quantify community response to known physical changes on the riverscape and across the region.     

Culvert replacements: improvement of stream biotic integrity?

Roads and associated stream crossings can modify and degrade natural hydrology of a system and alter organism movement. Culvert replacement and stream crossing improvements are extremely common and often done with the intent to improve biotic integrity of a system. We evaluated 3 sites where poor road‐stream crossings were improved by replacing improper culverts with full‐span natural bottom structures. We used a before‐after‐control‐impact paired series (BACIPS) design to determine if there was evidence of associated improvement in biotic integrity of the stream communities. Biotic integrity indices developed for coldwater fish and macroinvertebrates in the Northern Lakes and Forests Ecoregion were used to estimate responses of the biotic communities adjacent to culvert replacements. With poor to fair fish and macroinvertebrate communities prior to culvert replacement, we predicted communities would show improvement into the good range of the indices. With 2–4 years of pre‐data and 3–5 years of postdata, we were not able to detect improvements in overall biotic integrity utilizing fish or macroinvertebrate index scores. Road crossing improvements may synergistically restore stream ecosystems, restore natural sediment dynamics, and improve passage; however, in these cases local biotic integrity scores were not significantly improved. Culvert replacements are often developed based on the potential, or the perception, that they will restore ecological integrity and biological communities or fisheries; however, as restoration practitioners, researchers, and managers, assessing these claims and learning from prior restoration attempts is necessary.     

A comparison between diversity, similarity and biotic indices applied to the macroinvertebrate community of a small stream: the Ravella river (Como Province, Northern Italy)

This study aimed at comparing the results obtained by processing a series of data according to several diversity indices (Simpson, Berger-Parker, Margalef, Menhinick, McIntosh, Shannon) and one similarity index (Jaccard) with those obtained from two biotic indices (Trent River Biotic Index, Extended Biotic Index). In addition, Cody's index was adopted to measure the species turnover along the stream gradient. The source of the data was a study of the seasonal variations of macroinvertebrates from the Ravella stream (Como Province, Northern Italy). The conclusions are the following. There is clearly a certain connection between the organic debris in the habitat, the abundance of individuals and the decrease in the diversity value of the macroinvertebrate association. The species turnover along the stream gradient is rapid which is due, in addition to birth and death rates, to the fact that most of the insects emerge as terrestrial adults. The species abundance distribution is a very simple and powerful tool for describing and comparing the species diversity from different sampling stations. Any type of monitoring (e.g., biotic indices, diversity indices) is useful in comparing non-polluted and heavily polluted environments. Conversely, small differences between species associations are better highlighted if diversity indices with high discriminant ability (e.g., Simpson's index) or species abundance distribution are used rather than biotic indices.     

Use of artificial substrates for standardized sampling of macroinvertebrates in the assessment of water quality by the Belgian Biotic Index

The paper reviews 3 years of experience in Belgium and Portugal with artificial substrates for collecting macroinvertebrates used in water quality assessment by means of the Belgian Biotic Index (B.B.I.).Artificial substrates provide a valid alternative method for sampling the macroinvertebrate fauna and the possibility of standardizing the sampling effort, whereas sampling with a handnet may be more subjective.Research has been focussed on the effect of sampler design and composition as well as conditions of exposure on the number of systematic units and the biotic index obtained.With artificial substrates correct assessments could be performed in different types of watercourses, including lowland brooks and canals as well as fast running upland rivers located in different climates.Guidelines for the development of a simple standard procedure with artificial substrates are proposed.     

Biotic interactions hold the key to understanding metacommunity organisation

Biotic interactions are fundamental drivers governing biodiversity locally, yet their effects on geographical variation in community composition (i.e. incidence-based) and community structure (i.e. abundance-based) at regional scales remain controversial. Ecologists have only recently started to integrate different types of biotic interactions into community assembly in a spatial context, a theme that merits further empirical quantification. Here, we applied partial correlation networks to infer the strength of spatial dependencies between pairs of organismal groups and mapped the imprints of biotic interactions on the assembly of pond metacommunities. To do this, we used a comprehensive empirical dataset from Mediterranean landscapes and adopted the perspective that community assembly is best represented as a network of interacting organismal groups. Our results revealed that the co-variation among the beta diversities of multiple organismal groups is primarily driven by biotic interactions and, to a lesser extent, by the abiotic environment. These results suggest that ignoring biotic interactions may undermine our understanding of assembly mechanisms in spatially extensive areas and decrease the accuracy and performance of predictive models. We further found strong spatial dependencies in our analyses which can be interpreted as functional relationships among several pairs of organismal groups (e.g. macrophytes–macroinvertebrates, fish–zooplankton). Perhaps more importantly, our results support the notion that biotic interactions make crucial contributions to the species sorting paradigm of metacommunity theory and raise the question of whether these biologically-driven signals have been equally underappreciated in other aquatic and terrestrial ecosystems. Although more research is still required to empirically capture the importance of biotic interactions across ecosystems and at different spatial resolutions and extents, our findings may allow decision makers to better foresee the main consequences of human-driven impacts on inland waters, particularly those associated with the addition or removal of key species.     

A comparison of algal,macroinvertebrate, and fish assemblage indices for assessing low-level nutrient enrichment in wadeable Ozark streams

Biotic indices for algae, macroinvertebrates, and fish assemblages can be effective for monitoring stream enrichment, but little is known regarding the value of the three assemblages for detecting perturbance as a consequence of low-level nutrient enrichment. In the summer of 2006, we collected nutrient and biotic samples from 30 wadeable Ozark streams that spanned a nutrient-concentration gradient from reference to moderately enriched conditions. Seventy-three algal metrics, 62 macroinvertebrate metrics, and 60 fish metrics were evaluated for each of the three biotic indices. After a group of candidate metrics had been identified with multivariate analysis, correlation procedures and scatter plots were used to identify the four metrics having strongest relations to a nutrient index calculated from log transformed and normalized total nitrogen and total phosphorus concentrations. The four metrics selected for each of the three biotic indices were: algae—the relative abundance of most tolerant diatoms, the combined relative abundance of three species of Cymbella, mesosaprobic algae percent taxa richness, and the relative abundance of diatoms that are obligate nitrogen heterotrophs; macroinvertebrate—the relative abundance of intolerant organisms, Baetidae relative abundance, moderately tolerant taxa richness, and insect biomass; fish—herbivore and detritivore taxa richness, pool species relative abundance, fish catch per unit effort, and black bass (Micropterus spp.) relative abundance.All three biotic indices were negatively correlated to nutrient concentrations but the algal index had a higher correlation (rho = ?0.89) than did the macroinvertebrate and fish indices (rho = ?0.63 and ?0.58, respectively). Biotic index scores were lowest and nutrient concentrations were highest for streams with basins having the highest poultry and cattle production. Because of the availability of litter for fertilizer and associated increases in grass and hay production, cattle feeding capacity increases with poultry production. Studies are needed that address the synergistic effect of poultry and cattle production on Ozark streams in high production areas before ecological risks can be adequately addressed.