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蛋白质是各种生命活动的主要执行者,因此构建蛋白质相互作用的网络图对于准确理解蛋白质功能、揭开各种细胞活动的奥秘十分重要.串联亲和纯化(TAP),是近年来发展出来的一种能够快速研究在生理条件下蛋白质相互作用,揭示蛋白质复合体相互作用网络的新技术,已成为研究蛋白质组学的一个重要工具.随着该技术的不断完善,TAP技术在认识蛋白质相互作用的过程中必将发挥越来越重要的作用. 相似文献
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重组蛋白质技术作为蛋白质研究的重要手段之一,在生物化学与生物物理学研究领域,扮演着极其重要的角色.亲和纯化作为最为方便与快捷的重组蛋白质纯化手段,日益得到广泛的应用.由于各种亲和标签,纯化介质层出不穷,性质各异.应根据自身研究对象具体情况选择合适的亲和纯化标签.近年双亲和标签进行串联亲和纯化日益成为蛋白质相互作用研究的重要方法.多种亲和标签的搭配已得到成功应用,部分已进入商业化,并在各种模式生物中得到广泛的应用,本文就重组蛋白质亲和标签的选择与串联亲和纯化作一综述. 相似文献
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肠出血性大肠杆菌O157∶H7是一种重要的致病菌,加深其致病机理的基础研究将为相关疫苗研究及疾病控制等提供新的思路和依据.串联亲和纯化(TAP)技术是最近发展的分离纯化天然状态蛋白质复合物进而研究蛋白质相互作用的新方法.用我们自己构建的原核表达串联亲和标签载体,在大肠杆菌O157∶H7中表达了标签融合蛋白GroEL-TAP,建立了非变性条件下制备蛋白复合物的方法,并且对串联亲和纯化过程中的相关实验条件进行了探索和优化,最终得到了高纯度的GroEL-TAP与天然GroEL形成的嵌合型多聚体复合物.这表明我们建立的串联亲和纯化技术能高度特异地纯化靶蛋白参与形成的复合物,为后续寻找O157∶H7中毒力蛋白参与形成的复合物奠定了实验基础. 相似文献
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基因的功能是由蛋白质来执行的,而蛋白质要通过与其他生物分子相互作用来完成其各种生物功能。因此,如果能够快速做出蛋白质在不同时间、空间和不同环境中的相互作用图谱,就会帮助我们了解这些蛋白质的功能,进而了解许多生命活动的机制。目前,用于大规模研究蛋白质间相互作用的方法主要有酵母双杂交系统及其衍生系统、亲和纯化与质谱分析联用技术,前者用于研究蛋白分子间的两两相互作用,后者用于研究蛋白质复合物间的相互作用。本文主要阐述了酵母双杂交、细菌双杂交、哺乳动物细胞双杂交、亲和纯化与质谱联用技术在大规模蛋白质相互作用研究中的应用。 相似文献
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蛋白质相互作用研究的新技术与新方法 总被引:2,自引:0,他引:2
目前,蛋白质相互作用已成为蛋白质组学研究的热点. 新方法的建立及对已有技术的改进标志着蛋白质相互作用研究的不断发展和完善.在技术改进方面,本文介绍了弥补酵母双杂交的蛋白定位受限等缺陷的细菌双杂交系统;根据目标蛋白特性设计和修饰TAP标签来满足复合体研究要求的串联亲和纯化技术,以及在双分子荧光互补基础上发展的动态检测多个蛋白质间瞬时、弱相互作用的多分子荧光互补技术.还综述了近两年建立的新方法:与免疫共沉淀相比,寡沉淀技术直接研究具有活性的蛋白质复合体;减量式定量免疫沉淀方法排除了蛋白质复合体中非特异性相互作用的干扰;原位操作的多表位-配基绘图法避免了样品间差异的影响,以及利用多点吸附和交联加固研究弱蛋白质相互作用的固相蛋白质组学方法. 相似文献
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目的:作为一个新发现的癌蛋白,gankyrin在肝癌细胞的发生和形成中发挥重要作用。筛选与gankyrin相互作用的蛋白质,从而进一步探讨gankyrin的作用机制。方法:采用亲和纯化技术及质谱鉴定筛选与gankyrin相互作用的蛋白质。结果:初步筛选出了6个与gankyrin发生相互作用的蛋白质,经与MSDB或NCBInr数据库比对,这6个蛋白质均是26S蛋白酶体的组成部分,其中proteasome(prosome,macropain)26S subunit,ATPase,4为已报道的蛋白质,证实结果的可靠性。结论:采用亲和纯化的方法可以有效地筛选出与gankyrin相互作用的蛋白质,为进一步研究gankyrin的作用机制及生物学功能奠定了基础。 相似文献
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辅酶Ⅱ-亲和胶的制备和应用 总被引:2,自引:0,他引:2
亲和层析是一种特异性较高的分离纯化方法,目前已广泛应用于多种生物物质的分离纯化。NADP是生物体内许多酶的辅酶,是一种很好的亲和配基。因此,将NADP结合到不溶性介质上,可得到一种分离纯化有关酶及蛋白质的亲和胶。本文介绍NADPSepharose 4B胶的合成方法及其应用。 相似文献
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A generic protein purification method for protein complex characterization and proteome exploration. 总被引:50,自引:0,他引:50
We have developed a generic procedure to purify proteins expressed at their natural level under native conditions using a novel tandem affinity purification (TAP) tag. The TAP tag allows the rapid purification of complexes from a relatively small number of cells without prior knowledge of the complex composition, activity, or function. Combined with mass spectrometry, the TAP strategy allows for the identification of proteins interacting with a given target protein. The TAP method has been tested in yeast but should be applicable to other cells or organisms. 相似文献
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The tandem affinity purification (TAP) method: a general procedure of protein complex purification 总被引:59,自引:0,他引:59
Puig O Caspary F Rigaut G Rutz B Bouveret E Bragado-Nilsson E Wilm M Séraphin B 《Methods (San Diego, Calif.)》2001,24(3):218-229
Identification of components present in biological complexes requires their purification to near homogeneity. Methods of purification vary from protein to protein, making it impossible to design a general purification strategy valid for all cases. We have developed the tandem affinity purification (TAP) method as a tool that allows rapid purification under native conditions of complexes, even when expressed at their natural level. Prior knowledge of complex composition or function is not required. The TAP method requires fusion of the TAP tag, either N- or C-terminally, to the target protein of interest. Starting from a relatively small number of cells, active macromolecular complexes can be isolated and used for multiple applications. Variations of the method to specifically purify complexes containing two given components or to subtract undesired complexes can easily be implemented. The TAP method was initially developed in yeast but can be successfully adapted to various organisms. Its simplicity, high yield, and wide applicability make the TAP method a very useful procedure for protein purification and proteome exploration. 相似文献
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Li Y 《Biotechnology letters》2011,33(8):1487-1499
Tandem affinity purification (TAP) is a methodology for the isolation of protein complexes from endogenous sources. It involves
incorporation of a dual-affinity tag into the protein of interest and introduction of the construct into desired cell lines
or organisms. Using the two affinity handles, the protein complex assembled under physiological conditions, which contains
the tagged target protein and its interacting partners, can be isolated by a sequential purification scheme. Compared with
single-step purification, TAP greatly reduces non-specific background and isolates protein complexes with higher purity. TAP-based
protein retrieval plus mass spectrometry-based analysis has become a standard approach for identification and characterization
of multi-protein complexes. The present article gives an overview of the TAP method, with a focus on its key feature—the dual-affinity
tag. In addition, the application of this technology in various systems is briefly discussed. 相似文献
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With the completion of numerous genome projects, new high-throughput methods are required to ascribe gene function and interactions. A method proven successful in yeast for protein interaction studies is tandem affinity purification (TAP) of native protein complexes followed by MS. Here, we show that TAP, using Protein A and CBP tags, is not generally suitable for the purification and identification of proteins from tissues. A head-to-head comparison of tags shows that two others, FLAG and His, provide protein yields from Drosophila tissues that are an order of magnitude higher than Protein A and CBP. FLAG-His purification worked sufficiently well so that two cofactors of the Drosophila nuclear receptor protein dHNF4 could be purified from whole animals. These proteins, Hsc70 and Hsp83, are important chaperones and cofactors of other nuclear receptor proteins. However, this is the first time that they have been shown to interact with a non-steroid binding nuclear receptor. We show that the two proteins increase the ability of dHNF4 to bind DNA in vitro and to function in vivo. The tags and approaches developed here will help facilitate the routine purification of proteins from complex cells, tissues and whole organisms. 相似文献
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Toshiaki Higo Noriyuki Suka Haruhiko Ehara Masatoshi Wakamori Shin Sato Hideaki Maeda Shun-ichi Sekine Takashi Umehara Shigeyuki Yokoyama 《Journal of structural and functional genomics》2014,15(4):191-199
We developed a method for efficient chromosome tagging in Pichia pastoris, using a useful tandem affinity purification (TAP) tag. The TAP tag, designated and used here as the THF tag, contains a thrombin protease cleavage site for removal of the TAP tag and a hexahistidine sequence (6× His) followed by three copies of the FLAG sequence (3× FLAG) for affinity purification. Using this method, THF-tagged RNA polymerases I, II, and III were successfully purified from P. pastoris. The method also enabled us to purify the tagged RNA polymerase II on a large scale, for its crystallization and preliminary X-ray crystallographic analysis. The method described here will be widely useful for the rapid and large-scale preparation of crystallization grade eukaryotic multi-subunit protein complexes. 相似文献
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Bürckstümmer T Bennett KL Preradovic A Schütze G Hantschel O Superti-Furga G Bauch A 《Nature methods》2006,3(12):1013-1019
Tandem affinity purification (TAP) is a generic two-step affinity purification protocol that enables the isolation of protein complexes under close-to-physiological conditions for subsequent analysis by mass spectrometry. Although TAP was instrumental in elucidating the yeast cellular machinery, in mammalian cells the method suffers from a low overall yield. We designed several dual-affinity tags optimized for use in mammalian cells and compared the efficiency of each tag to the conventional TAP tag. A tag based on protein G and the streptavidin-binding peptide (GS-TAP) resulted in a tenfold increase in protein-complex yield and improved the specificity of the procedure. This allows purification of protein complexes that were hitherto not amenable to TAP and use of less starting material, leading to higher success rates and enabling systematic interaction proteomics projects. Using the well-characterized Ku70-Ku80 protein complex as an example, we identified both core elements as well as new candidate effectors. 相似文献
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A modified mammalian tandem affinity purification procedure to prepare functional polycystin-2 channel 总被引:6,自引:0,他引:6
The tandem affinity purification (TAP) procedure was initially developed as a tool for rapid purification of native protein complexes expressed at their natural levels in yeast cells. This purification procedure was also applied to study interactions between soluble proteins in mammalian cells. In order to apply this procedure to mammalian membrane proteins, we created a modified TAP tag expression vector and fused with the PKD2 gene, encoding a membrane cation channel protein, polycystin-2, mutated in 15% of autosomal dominant polycystic kidney disease. We generated epithelial Madin-Darby canine kidney cell line stably expressing TAP-tagged polycystin-2, improved the subsequent steps for membrane protein release and stability, and succeeded in purifying this protein. Using patch clamp electrophysiology, we detected specific polycystin-2 channel activities when the purified protein was reconstituted into a lipid bilayer system. Thus, this modified TAP procedure provides a powerful alternative to functionally characterize membrane proteins, such as ion channels, transporters and receptors, using cell-free system derived from mammalian cells. 相似文献
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Identification of novel protein-protein interactions using a versatile mammalian tandem affinity purification expression system 总被引:1,自引:0,他引:1
Knuesel M Wan Y Xiao Z Holinger E Lowe N Wang W Liu X 《Molecular & cellular proteomics : MCP》2003,2(11):1225-1233
Identification of protein-protein interactions is essential for elucidating the biochemical mechanism of signal transduction. Purification and identification of individual proteins in mammalian cells have been difficult, however, due to the sheer complexity of protein mixtures obtained from cellular extracts. Recently, a tandem affinity purification (TAP) method has been developed as a tool that allows rapid purification of native protein complexes expressed at their natural level in engineered yeast cells. To adapt this method to mammalian cells, we have created a TAP tag retroviral expression vector to allow stable expression of the TAP-tagged protein at close to physiological levels. To demonstrate the utility of this vector, we have fused a TAP tag, consisting of a protein A tag, a cleavage site for the tobacco etch virus (TEV) protease, and the FLAG epitope, to the N terminus of human SMAD3 and SMAD4. We have stably expressed these proteins in mammalian cells at desirable levels by retroviral gene transfer and purified native SMAD3 protein complexes from cell lysates. The combination of two different affinity tags greatly reduced the number of nonspecific proteins in the mixture. We have identified HSP70 as a specific interacting protein of SMAD3. We demonstrated that SMAD3, but not SMAD1, binds HSP70 in vivo, validating the TAP purification approach. This method is applicable to virtually any protein and provides an efficient way to purify unknown proteins to homogeneity from the complex mixtures found in mammalian cell lysates in preparation for identification by mass spectrometry. 相似文献