广东南岭森林土壤中可培养细菌多样性

广东南岭森林土壤中蕴藏着丰富的生物资源,但对其中的可培养细菌种类仍缺乏系统了解。本研究采用贫营养型的R2A培养基和富营养型的TSA培养基对南岭森林土壤中细菌进行了分离,获得细菌408株,分别从属于厚壁菌门、变形菌门、放线菌门和拟杆菌门的35属。其中的优势类群为厚壁菌门,占分离总数量的71%。在属水平,芽胞杆菌及其近缘属为优势类群。除芽胞杆菌外,假单胞菌、伯克霍尔德氏菌、草酸杆菌科Collimonas属和罗丹诺杆菌科Dyella属是分离获得的主要类群。R2A培养基在分离革兰氏阴性的变形菌门菌株方面表现出一定的偏好性,而TSA培养基分离得到的更多为快速生长的芽胞杆菌及其近缘的革兰氏阳性细菌。发现了15属的菌株具有一定的水解酶活性,大多表现出对淀粉和牛奶的水解活性,对有机磷的水解性能优于对无机磷的水解。降解纤维素的菌株则主要集中于芽胞杆菌及其近缘属中。发现了潜在新物种26株,分布于芽胞杆菌、Dyella、类芽孢杆菌等9属中。本研究仅使用了两种营养类型的培养基,进一步借助培养组学技术有望能更加全面反映南岭森林土壤中的可培养微生物多样性。     

多株功能菌种混合培养条件的响应面优化及其生长关系

对3种具有土壤中多种重金属污染修复和病虫害防治功能的光合细菌（Photosynthetic bacteria,PSB,包括Rhodobacter sphaeroides H菌株、Rhodopseudomonas palustris N菌株和Rhodospirillium rubrum M菌株）、枯草芽胞杆菌（Bacillus subtilis, BS）和植物乳酸杆菌（Lactobacillus plantarum, LP）进行混合培养,利用单因素和响应面试验优化培养基配方以及培养条件。确定功能菌混合培养的最佳条件：以光合细菌培养基为基础培养基,外加碳源为10 g/L蔗糖、氮源为1.25 g/L硫酸铵、培养温度为31.5 ℃、初始pH值为7.1、接种量为接种后的初始培养活菌数1.90×10⁹cfu/mL、培养时间为28.0 h。通过功能菌的加性模型法、生长动力学以及混合培养的生长关系分析表明,光合细菌、枯草芽胞杆菌和植物乳酸杆菌的生长均存在互惠互利关系。     

解淀粉芽胞杆菌抗真菌活性研究进展

解淀粉芽胞杆菌(Bacillus amyloliquefaciens)具有很强的抑制植物病原真菌的能力。其菌体细胞能产生多种酶类、脂肽类抗生素、生物表面活性素、聚酮类化合物和抑菌蛋白,同时具有诱导植物产生系统抗性(ISR)的能力,因此在工农业、种植业、养殖业、食品加工业、果蔬的采后保鲜和饲料业等行业具有重要价值。本文对解淀粉芽胞杆菌抗真菌作用、抗真菌能力提高策略、抗菌化合物合成调节、抑制真菌机制及其引发的ISR等问题进行了深入探讨和综述。     

多脂长喙壳菌次生代谢产物的抑菌活性研究

植物病原真菌是生态系统的重要组成部分,能够代谢产生多种生物活性物质。用纸片法检测多脂长喙壳菌(Ceratocystis adiposa)发酵提取物对13种致病细菌的抑菌活性,并对潜在抗菌活性化合物的热、酸碱和光稳定性进行检测,同时应用OSMAC策略寻找多脂长喙壳菌产抗菌化合物的最佳培养条件。结果表明:多脂长喙壳菌提取物对革兰阳性菌——蜡样芽胞杆菌(Bacillus cereus)、缓慢芽胞杆菌(Bacillus lentus)、藤黄微球菌(Micrococcus luteus)具有抗菌活性,MIC分别为6.25、3.125和1.562 5 mg/m L,抗菌化合物具有较好的耐热、耐酸碱和耐辐射性,培养基种类、培养时间和接种量会影响多脂长喙壳菌抗菌化合物的产生,为多脂长喙壳菌抗菌化合物的开发利用提供参考。     

一株抗真菌解淀粉芽孢杆菌的分离鉴定及其发酵条件的初步研究

从堆肥中分离到一株对植物病原菌尖孢镰刀菌(Fusarium oxysporum)具有强烈抗菌活性并具有较广抗菌谱的细菌Q-12菌株。通过形态观察、生理生化实验1、6S rDNA同源性序列分析以及部分特异性基因序列分析,鉴定该菌为解淀粉芽孢杆菌。该菌的最适培养基组成为:葡萄糖5g/L,NH4Cl 1g/L,牛肉膏0.8g/L,氯化镁5g/L。最适培养温度为33℃,最适培养pH为6.0,最适培养时间为40h。     

一株抗水稻纹枯病菌的解淀粉芽胞杆菌分离与鉴定

【目的】筛选对水稻纹枯病菌(Rhizoctonia solani)具有强拮抗作用的细菌菌株。【方法】用指示菌法筛选拮抗菌株;通过形态观察、生理生化实验、Biolog及16S rDNA序列分析鉴定目标菌株;利用平板双向培养法和滤纸片扩散法测定抑菌谱及拮抗性质。【结果】分离到一株高活力的水稻纹枯病菌拮抗菌株YB-3,该菌株属于解淀粉芽胞杆菌(Bacillus amyloliquefaciens);菌株YB-3对常见的14株病原真菌和7株细菌具有较强的拮抗作用,并发现其对亲缘关系较近的芽孢菌属有较强的拮抗作用;该菌株的抑制活性具有温度稳定、耐酸、但对蛋白酶敏感的特点。【结论】通过指示菌法筛选到一株对水稻纹枯病菌有强拮抗作用的解淀粉芽胞杆菌(B.amyloliquefaciens)YB-3,它具有广谱、高效的植物病原菌拮抗活性。     

抑制小麦赤霉病生防芽胞杆菌的筛选与相关研究

芽胞杆菌因其具有广谱的抑菌活性,在农业生产上常用于防控植物病害。本研究比较了五种芽胞杆菌发酵上清液对禾谷镰刀菌PH-1的抑制作用,结果发现枯草芽胞杆菌SCK6基本没有抑制效果,地衣芽胞杆菌BSK3和多粘芽胞杆菌BSK4有较弱的抑制作用,解淀粉芽胞杆菌TZ01和贝莱斯芽胞杆菌SH06抑制效果明显,其中贝莱斯芽胞杆菌SH06的抑制作用最为显著。进一步从不同培养基、培养时间及渗透剂对SH06菌株发酵条件进行了优化,结果表明在TB培养基中培养24 h并加入0. 5%TritonX-100的渗透剂时,发酵上清对禾谷镰刀菌PH-1的抑制效果最佳。本文为贝莱斯芽胞杆菌作为一种新型生防菌剂奠定了良好的应用基础,不仅丰富了生物防治菌种的菌库,也为小麦赤霉病的防治提供了一种新的选择,对未来菌种联合防治提供了新的方向。     

野生东亚钳蝎消化道可培养细菌的分离鉴定、耐药性及产消化酶活性

目的分离东亚钳蝎消化道中的可培养细菌,并研究其产消化酶活性和耐药性,探讨消化道细菌对东亚钳蝎消化食物的影响。方法野生东亚钳蝎采用传统细菌分离培养方法分离其消化道内可培养细菌,利用16S rRNA序列进行细菌的分子鉴定;利用平板透明圈法测定可培养细菌产淀粉酶、蛋白酶、脂肪酶和纤维素酶等消化酶的活性;采用药敏纸片扩散法进行消化道可培养细菌的药敏试验。结果在东亚钳蝎消化道中共分离到4个属10种细菌,其中芽胞杆菌属7种,分别为蛋白水解芽胞杆菌、解淀粉芽胞杆菌、巨大芽胞杆菌、枯草芽胞杆菌、蜡样芽胞杆菌、婴儿芽胞杆菌和长形赖氨酸芽胞杆菌;葡萄球菌属、纤维微菌属和短波单胞菌属各1株,分别为松鼠葡萄球菌、纤维化纤维微细菌和泡囊短波单胞菌。对10种细菌的产消化酶活性分析表明,8种细菌有产消化酶活性,占细菌总数的80%;5种细菌有产蛋白酶活性,分别为蛋白水解芽胞杆菌、枯草芽胞杆菌、蜡样芽胞杆菌、松鼠葡萄球菌和纤维化纤维微细菌;7种细菌有产淀粉酶活性,分别为蛋白水解芽胞杆菌、解淀粉芽胞杆菌、巨大芽胞杆菌、枯草芽胞杆菌、蜡样芽胞杆菌、松鼠葡萄球菌和婴儿芽胞杆菌;未筛选到产纤维素酶和脂肪酶活性的细菌;蛋白水解芽胞杆菌、枯草芽胞杆菌、蜡样芽胞杆菌和松鼠葡萄球菌可同时产2种消化酶。在药敏试验中,8种细菌对多粘菌素B耐药,5种细菌对四环素耐药,3种细菌对万古霉素耐药。结论东亚钳蝎消化道中可培养细菌的组成相对单一,多数细菌有分泌淀粉酶和蛋白酶的功能,说明东亚钳蝎消化道中的细菌可能有协助其进行食物消化的功能。消化道细菌对抗生素多表现为敏感,推测其生存环境中抗生素的污染较少,同时在对东亚钳蝎人工饲养的场所进行消毒时,要谨慎选择抗生素,防止抗生素使用不当致使东亚钳蝎肠道菌群紊乱引起疾病。     

解淀粉芽胞杆菌BaX030的分离鉴定及抗菌功能

摘要:【目的】芽胞杆菌是微生物活性物的重要来源,从全国各地采集的72份土壤样品中分离出339株芽胞杆菌,研究各菌株抑菌活性,分离纯化抑菌活性物,为丰富芽胞杆菌菌种资源和微生物次级代谢物的挖掘奠定实际应用基础。【方法】采用水浴加热和稀释平板涂布等方法从河南花生地采集的土壤中筛选得到一株具有很强抑菌活性的芽胞杆菌,结合形态观察、生理生化特征和16S rRNA基因序列同源性比对分析,对该菌株进行鉴定。丙酮沉淀、葡聚糖凝胶柱层析、C18反相柱层析得到Bacillus amyloliquefaciens X030抑菌活性物,LC-MS/MS鉴定其分子量。利用滤纸片扩散法和平板对峙培养法测定抑菌谱及拮抗性质。【结果】筛选分离得到一株解淀粉芽胞杆菌,归类并命名为解淀粉芽胞杆菌Bacillus amyloliquefaciens X030。BaX030对金黄色葡萄球菌(Staphylococcus aureus)、白色念珠菌(Candida albicans)、酵母菌( Saccharomycetes)有较强抑制效果,对水稻稻瘟病菌(Pyriculariaoryzae)、辣椒尖胞炭疽病菌(Chili pointed cell anthrax)、枇杷炭疽病菌(Gloeosporium eriobotryae speg)、烟草黑胫病菌(Phytophthora parasitica)有良好拮抗活性。初步确定BaX030产生的抑菌活性物为多肽类化合物。【结论】分离得到的B． amyloliquefaciens X030产生了一个对病原细菌具有较强抑制作用的多肽,同时该菌株在拮抗植物病原真菌方面也有明显的效果。     

小菌虫肠道可培养细菌的分离鉴定 及产消化酶活性分析

摘要：目的 分离小菌虫肠道可培养细菌,并研究其产消化酶活性,探讨肠道细菌对小菌虫消化食物的影响。方法 采用传统细菌分离培养方法分离小菌虫肠道细菌,利用16S rDNA序列进行细菌分子鉴定;利用筛选培养基鉴别各细菌的产蛋白酶、脂肪酶、淀粉酶和纤维素酶活性。结果 在小菌虫肠道中分离到4种可培养细菌,分别是枯草芽胞杆菌（Bacillus subtilis）、肺炎克雷伯菌（Klebsiella pneumoniae）、Pseudocitrobacter faecalis和芽胞杆菌（Bacillus sp.）。其中,2种芽胞杆菌属细菌有产消化酶活性。枯草芽胞杆菌有产纤维素酶、淀粉酶和蛋白酶活性;芽胞杆菌仅有产蛋白酶活性,但产酶能力低于枯草芽胞杆菌。结论 小菌虫肠道细菌中可培养细菌结构简单,但其中的芽胞杆菌属细菌有产纤维素酶、淀粉酶和蛋白酶能力,说明小菌虫肠道中的2种芽胞杆菌属细菌可能有协助小菌虫进行食物消化的功能。     

Effects of biocontrol agents on Fusarium verticillioides count and fumonisin content in the maize agroecosystem: Impact on rhizospheric bacterial and fungal groups

The present study tested the ability of Bacillus amyloliquefaciens and Microbacterium oleovorans to reduce Fusarium verticillioides populations and fumonisin accumulation in the maize agroecosystem. The impact of releasing these biocontrol agents on rhizospheric bacterial and fungal groups was also evaluated through isolation and identification of culturable microorganisms. When applied as seed coatings at a concentration of 10⁷ CFU ml⁻¹ both agents were effective in reducing F. verticillioides counts and fumonisin B₁ and B₂ content from maize grains. Rhizospheric counts of the pathogen were also decreased by use of B. amyloliquefaciens at 10⁷ CFU ml⁻¹. Richness and diversity indexes calculated for bacteria and fungi inhabiting the rhizosphere of maize remained unchanged following the addition of both biocontrol agents to seeds. Our research is being continued to further characterize the bacterial and fungal isolates with additional field assays.     

Isolation and characterization of a co-producer of fengycins and surfactins, endophytic Bacillus amyloliquefaciens ES-2, from Scutellaria baicalensis Georgi

An endophytic bacterium was isolated from Chinese medicinal plant Scutellaria baicalensis Georgi. The phylogenetic and physiological characzterization indicated that the isolate, strain ES-2, was Bacillus amyloliquefaciens, which produced two families of secondary metabolites with broad-spectrum antibacterial and antifungal activities. Culture filtrate of ES-2 displayed antagonism against some phytopathogenic, food-borne pathogenic and spoilage bacteria and fungi owing to the existence of antimicrobial compounds. A HPLC-MS analysis showed two series of ion peaks from the culture filtrate. A further electrospray ionization/collision-induced dissociation spectrum revealed that the two series ion peaks represented different fengycin homologues and surfactin homologues, respectively, which had a potential for food preservation and the control of several fungal plant diseases.     

Effects of habitat area, isolation, and landscape diversity on plant species richness of calcareous grasslands

Calcareous grasslands harbour a high biodiversity, but are highly fragmented and endangered in central Europe. We tested the relative importance of habitat area, habitat isolation, and landscape diversity for species richness of vascular plants. Plants were recorded on 31 calcareous grasslands in the vicinity of the city of Göttingen (Germany) and were divided into habitat specialist and generalist species. We expected that habitat specialists were more affected by area and isolation, and habitat generalists more by landscape diversity. In multiple regression analysis, the species richness of habitat specialists (n = 66 species) and habitat generalists (n = 242) increased with habitat area, while habitat isolation or landscape diversity did not have significant effects. Contrary to predictions, habitat specialists were not more affected by reduced habitat area than generalists. This may have been caused by delayed extinction of long-living plant specialists in small grasslands. Additionally, non-specialists may profit more from high habitat heterogeneity in large grasslands compared to habitat specialists. Although habitat isolation and landscape diversity revealed no significant effect on local plant diversity, only an average of 54% of habitat specialists of the total species pool were found within one study site. In conclusion, habitat area was important for plant species conservation, but regional variation between habitats contributed also an important 46% of total species richness.     

Forest fragmentation and plant reproductive success: a case study in four perennial herbs

We assessed the effects of habitat fragmentation on reproductive success in natural populations of four forest herbs with differing life-history traits and whose distribution patterns appeared to be negatively affected by decreased habitat size and/or increased isolation: Carex sylvatica, Galium odoratum, Sanicula europaea and Veronica montana. Our aims were to test (1) whether habitat size and isolation are positively correlated with population size and isolation, respectively, (2) whether plant reproductive success, a major component of plant fitness, is reduced in small and/or isolated populations when also accounting for differences in habitat quality (edaphic conditions, light intensity) and the effects of plant size, and (3) whether species with different life histories are affected differently. There were significant positive relationships between habitat and population size and between habitat and population isolation in some, but not all of the species. We mostly found no negative effects of small population size or isolation on reproduction. However, reproductive success was reduced in small populations of Sanicula, and this effect was independent of differences in plant size and environmental conditions. The reduced fecundity in small populations may be a consequence of the Allee-effect, a possible mechanism being pollen limitation. Furthermore, the proportion of flowering ramets was reduced in small and isolated populations of Galium, which may have been caused by changes in population structure. Lastly, we found some evidence for largely outcrossing, non-clonal species to be more sensitive to reductions in population size, at least in terms of their reproductive success.     

罗汉果内生真菌多样性研究

该文采用传统形态学方法结合r DNA-ITS序列分析,对我国重要药用植物罗汉果中的内生真菌进行了鉴定并研究其多样性。结果表明:采用组织培养法从罗汉果健康植株中共分离得到150株内生真菌,包括罗汉果中雌株的内生真菌96株、雄株的内生真菌54株。122株内生真菌经形态学结合r DNA-ITS序列分析鉴定为9个属,均归属为子囊菌门,包含座囊菌纲(Dothideomycetes)和子囊菌纲(Sordariomycetes)。其中,座囊菌纲(Dothideomycetes)真菌包含3科、3属;子囊菌纲(Sordariomycetes)真菌包含6科、6属。优势属为刺盘孢属(Colletotrichum)和镰刀菌属(Fusarium)。罗汉果雌、雄植株不同组织中内生真菌的定殖率及分离率的变化规律均不相同,雌株中以根中内生真菌的定殖率和分离率最高,叶片中的最低;在雄株中以叶片中的定殖率和分离率最高,根中的最低。不同菌株在雌、雄两种植株的不同组织中的分布均不同,结合内生真菌群落组成的相似性比较结果,表明部分内生真菌对罗汉果雌株和雄株,以及同一植株中的不同组织均具有偏好性。不同组织中内生真菌的多样性指数在0.11~0.69的范围,其中雌株根部的内生真菌多样性指数最高。以上研究结果为后期探究内生真菌与罗汉果互作关系奠定了基础。     

Pilot-scale production of carboxymethylcellulase from rice hull by Bacillus amyloliquefaciens DL-3

Optimal conditions for pilot-scale production of the carboxymethylcellulase (CMCase) by Bacillus amyloliquefaciens DL-3 were investigated. The best carbon and nitrogen sources for the production of CMCase by B. amyloliquefaciens DL-3 were found to be rice hull and peptone and their optimal concentrations were 5.0 and 0.20% (w/v), respectively. Optimal temperature and initial pH for the production of CMCase were 37°C and 6.8. Optimal agitation speed and aeration rate for the production of CMCase were 300 rpm and 1.0 vvm in a 7 L bioreactor, which were different from those for the cell growth of B. amyloliquefaciens DL-3. The highest productions of CMCase by B. amyloliquefaciens DL-3 from 5.0% (w/v) rice hull as a carbon source under optimal conditions in a 7 or 100 L bioreactor were 220 and 367 U/mL, respectively.     

Genomic DNA isolation and amplification from callus culture in succulent plants,<Emphasis Type="Italic">Carpobrotus</Emphasis> species (Aizoaceae)

Genomic DNA of high quality and quantity is needed to analyze genetic diversity with AFLP.Carpobrotus plant species, like most succulents, contain high amounts of polysaccharides and polyphenols, making PCR amplification difficult. Our protocol eliminates contaminants before DNA isolation by using leaf callus as plant material. This simple and inexpensive technique gives an average DNA yield of 1800 ng/g of callus and high reproducible profiles in AFLP. Our results indicate that no genetic variability is associated with callus culture conditions. This technique is suitable for studying genomic polymorphism in succulents and other plants when classic DNA extraction procedures fail.     

生防解淀粉芽胞杆菌的研究进展

解淀粉芽胞杆菌(Bacillus amyloliquefaciens)因能抑制植物病害和促进植物生长而被广泛研究。随着测序技术的不断发展,解淀粉芽胞杆菌菌株的全基因组序列陆续被测定,综述了其拮抗作用相关的功能基因、生防机制及植物-病原物-生防菌的相互作用,并对后续研究趋势进行了展望,为解淀粉芽胞杆菌的深入研究及其更好的应用提供理论参考     

Cloning and expression of the gene for neutral protease of Bacillus amyloliquefaciens in Bacillus subtilis

A Bacillus amyloliquefaciens neutral protease gene was cloned and expressed in Bacillus subtilis.The chromosomal DNA of B. amyloliquefaciens strain F was partially digested with restriction endonuclease Sau3AI, and 2 to 9 kb fragments isolated were ligated into the BamHI site of plasmid pUB110. Then, B. subtilis strain 1A289 was transformed with the hybrid plasmids by the method of protoplast transformation and kanamycin-resistant transformants were screened for the formation of large halo on a casein plate. A transformant that produced a large amount of an extracellular neutral protease harbored a plasmid, designated as pNP150, which contained a 1.7 kb insert.The secreted neutral protease of the transformant was found to be indistinguishable from that of DNA donor strain B. amyloliquefaciens by double immunodiffusion test and SDS-polyacrylamide gel electrophoresis.The amount of the neutral protease activity excreted into culture medium by the B. subtilis transformed with pNP150 was about 50-fold higher than that secreted by B. amyloliquefaciens. The production of the neutral protease in the transformant was partially repressed by addition of glucose to the medium.     

Combining larval habitat quality and metapopulation structure – the key for successful management of pre-alpine Euphydryas aurinia colonies

This study aims to analyse larval habitat preferences and landscape level population structure of the threatened Marsh Fritillary butterfly, Euphydryas aurinia, and discusses implications for the conservation and management of this strongly declining species in central Europe. Whereas current management strategies are mainly based on studies of habitat requirements of adult individuals, we intend to emphasise larval habitat quality and population processes at the landscape level as additional key factors. Microhabitat preference analysis of egg-laying females showed that eggs were predominantly laid on prominent large-sized host plant individuals. Additionally, when Succisa pratensis was used as a host plant (as opposed to Gentiana asclepiadea), host individuals in open vegetation structure were preferred. Optimal oviposition conditions were present in recently abandoned calcareous fen meadows and at the edges of such meadows currently in use. A two-year patch-occupancy study in the northern pre-alpine region of south-west Germany indicated that E. aurinia lives in a metapopulation. In a logistic-regression model, patch size, isolation, and habitat quality explained 82% of the observed patch-occupancy pattern in 2001. Our data suggest that a suitable conservation strategy must incorporate both the conservation of a network of suitable habitat patches, and efforts to maximise local habitat quality by ensuring that host plants can grow to a large size and are surrounded by sparse and low vegetation cover.