核酸提取方法进展

核酸提取是分子生物学的基本方法,也是核酸诊断中最关键的方法,它是下游诊断、分析和制备的前提。过去的核酸提取方法繁琐费时且有限。目前,核酸提取方法已经取得了较大进步。本文综述了核酸提取方法的进展情况,包括传统的基于溶液的抽提方法、现在常用的柱提取法、正兴起的多效生物分子抽提法和自动化抽提系统等。多效生物分子抽提法、自动抽提系统的微型化和完全自动化或者它们的组合是核酸提取技术未来发展的方向。     

从脱毒棉籽粕和食用菌中提取食用核酸的工艺探讨

目的：利用核酸含量高的植物原料,探索食用核酸提取新工艺。方法：以脱毒棉籽粕粉和平菇子实体为原料,采用去离子水一次抽提-等电点与乙醇分次沉析法和NaCl溶液分次抽提-等电点与乙醇一次沉析法从中提取核酸。结果：两种原料采用两种不同工艺,提取核酸制品的A260／A280值均大于1．6,其中水提法大于1．6,盐提法大于1．8。核酸提取率在1．0％以上,其中水提法为1．07％和2．05％,盐提法为1．74％和2．48％。结论：脱毒棉籽粕粉和平菇子实体均是提取核酸的良好原料,后者优于前者。水提法和盐提法均适合于对脱毒棉籽粕粉和平菇子实体中食用核酸的提取,盐提法更为合理。     

棉阿舒囊霉细胞色素C的纯化、结晶和专一性的比较

棉阿舒囊霉(Ashbya gossypii)细胞色素C可用氯化钠抽提法或乙酸乙酯自溶法从菌体中抽出,经阳离子交换树脂Zeroli*226柱层析、硫酸铵分部沉淀及反透析后,可被纯化和结晶。乙酸乙酯自溶法的抽提得率高于氯化钠抽提法。两种方法抽提及纯化的细胞色素C在电泳中都表I见为均一,但氯化钠抽提之细胞色素C的生物活力略高于用乙酸乙酯抽提的细胞色素C。     

不同提取方法对桂花精油品质的影响

用超临界流体萃取法(SCFE)、可食用石油醚和酒精抽提蒸馏三种不同的抽提方法,提取了咸宁桂花品种——银星的花精油;气质联用(GC-MS)分析不同方法提取精油的香气成分及其相对含量。结果表明:SCFE提取的精油得率最高(0.19%),紫罗兰酮、醇类的相对含量高达36.99%;石油醚浸提结果次之(0.13%),酒精抽提法不可取(0.07%)。     

Effect of Different Extraction Methods on Osmanthus Oil Quality

用超临界流体萃取法(SCFE)、可食用石油醚和酒精抽提蒸馏三种不同的抽提方法,提取了咸宁桂花品种——银星的花精油;气质联用(GC-MS)分析不同方法提取精油的香气成分及其相对含量.结果表明:SCFE提取的精油得率最高(0.19％),紫罗兰酮、醇类的相对含量高达36.99％;石油醚浸提结果次之(0.13％),酒精抽提法不可取(0.07％).     

14型肺炎链球菌荚膜多糖纯化工艺中两种去除蛋白方法的比较

目的苯酚抽提法和脱氧胆酸钠沉淀法去除14型肺炎链球菌荚膜多糖中蛋白质的效果比较。方法将3批次14型肺炎链球菌发酵培养液经超滤、乙醇沉淀等方法初步纯化后,平分成两份,分别采用苯酚抽提法和脱氧胆酸钠沉淀法去除蛋白,通过比较多糖收获量、多糖组分检定结果、多糖分子质量、多糖抗原活性、多糖核磁共振图谱,以此评价这两种蛋白去除方法的效果。结果与苯酚抽提法相比,脱氧胆酸钠沉淀法制备的14型肺炎链球菌纯化荚膜多糖除收获量较高,蛋白和核酸杂质含量较低外,氨基己糖含量、多糖分子质量、抗原活性和多糖核磁共振图谱的检定分析结果无显著性差异(P>0.1)。结论作为14型肺炎链球菌荚膜多糖纯化工艺中的除蛋白方法,脱氧胆酸钠沉淀法优于苯酚抽提法。     

三种人全血基因组DNA提取方法的比较

目的：比较改良酚一氯仿抽提法、盐析法、试剂盒法从人全血中提取基因组DNA的效果,以期建立一种快速、经济的提取高质量基因组DNA的方法。方法：分别用上述三种方法从人全血中提取基因组DNA,通过紫外分光光度计、琼脂糖凝胶电泳、聚合酶链式反应（PCR）、限制性内切酶酶切检测提取的基因组DNA的产量、纯度和质量。结果：改良酚一氯仿抽提法与试剂盒法提取的基因组DNA相比,DNA的产量有统计学差异,DNA的纯度无统计学差异,但试剂盒法提取的基因组DNA有较明显的降解现象：盐析法与改良酚．氯仿抽提法、试剂盒法相比,基因组DNA的产量和纯度都存在统计学差异,并且基因组DNA聚合酶链式反应（PCR）扩增的稳定性也明显劣于另外两种方法;三种方法提取基因组DNA均能进行限制性内切核酸消化。结论：改良酚一氯仿抽据取法是一种经济、快速、高效、稳定提取人全血基因组DNA的方法,适用于批量临床标本处理。     

不同DNA抽提方法对普通PCR和实时荧光定量PCR方法检测家蚕微孢子虫的影响

为了优选快速、 灵敏、 特异的家蚕微孢子虫Nosema bombycis分子检测方法和DNA抽提方法, 本文通过对家蚕微孢子虫TaqMan探针荧光定量PCR检测方法和SYBR Green荧光定量PCR检测方法的建立以及反应体系优化, 并与普通PCR方法进行比较; 再采用4种不同DNA抽提方法分别对PCR和实时荧光定量PCR方法检测家蚕微孢子虫悬浮液的效果评价。结果显示: 不经过DNA抽提, 直接将家蚕微孢子虫发芽液进行PCR反应的效果优于其他方法, 检测灵敏度由高到低依次为直接法、 酚/氯仿抽提法、 动物组织DNA试剂盒抽提法和植物组织DNA试剂盒抽提法; TaqMan探针法检测家蚕微孢子虫发芽液的灵敏度和SYBR Green法相近, 达到微孢子10²个/mL, 两者均优于普通PCR方法。实验表明, 直接采用发芽液结合荧光定量PCR方法检测家蚕微孢子虫最为简便、 快速、 灵敏。该研究结果将有助于提高家蚕微粒子病监控技术和检疫能力, 对家蚕微粒子病的检疫和防治具有积极意义。     

适于小麦叶片蛋白质组分析的样品提取方法研究

以‘铭贤169'小麦苗期叶片为材料,分别采用传统的TCA/丙酮沉淀法、酚提取-甲醇/醋酸铵沉淀法以及改进的TCA/丙酮沉淀-酚/SDS联合抽提法提取叶片总蛋白,进行双向电泳分离和胶体考染,以建立适用于小麦蛋白质组分析的样品制备方法.结果表明:TCA/丙酮沉淀法较酚提取-甲醇/醋酸铵沉淀法获得的蛋白杂质较少,在二维电泳图谱中的蛋白点较酚抽提-甲醇/醋酸铵沉淀法提取的蛋白点清晰且多.相比于以上2种提取蛋白样品方法,改进的TCA/丙酮沉淀-酚/SDS联合抽提法提取的小麦叶片蛋白杂质少、二维电泳图谱上的点明显增多、分辨率较高.所选小麦的代表性蛋白点能获得成功鉴定.该方法可推广应用于水稻叶片蛋白质组分析的样品提取.     

还原型谷胱甘肽高产菌株的初筛及其提取工艺优化

目的:筛选还原型谷胱甘肽(GSH)高产菌株并优化其提取工艺.方法:从中科院沈阳应用生态研究所菌种保藏室的酵母菌库中筛选GSH高产的酵母菌,改进培养基组分,提高胞内GSH含量,并优化热水抽提和乙醇提取两种方法,提高提取液中GSH含量.结果:筛选获得一株酿酒酵母Y,其胞内GSH含量9.60 mg/g,培养基改良后,胞内GSH含量又提高了34.8%.通过单因素和正交试验确定热水抽提法最优提取条件为:料液比1∶3,pH 2.0,在90℃水浴中,抽提10min,GSH的产量可达14.27mg/g干菌体.结论:添加氨基酸和葡萄糖都有利于酵母菌体的生长和GSH合成.热水抽提法较乙醇提取法相比,提取效果好、无污染、操作简单,为后续的分离纯化工作奠定基础.     

Applying signal theory to the analysis of biomolecules

MOTIVATION: The accumulation of sequence-related and other biological data for basic research and application purposes invites disaster. It appears very likely that neither traditional thinking nor current technologies (including their foreseeable evolutionary developments) will be able to cope with this ever intensifying situation. RESULTS: We present the detailed theoretical background for applying signal theory, as known from speech recognition and image analysis, to the analysis of biomolecules. The general scheme is as follows: biochemical and biophysical properties of biomolecules are used to model an n-dimensional signal which represents the entire information-bearing biomolecule. Such signals are used to search for biological principles, analogies or similarities between biomolecules. In a series of simple experiments (bacterial DNA, generation of real signals using melting enthalpies, detection filtering by convolution of signals) we have shown that the novel system for comparative analysis of the properties of information-bearing biomolecules works as in theory. SUPPLEMENTARY INFORMATION: http://genome.gbf.de/wavepaper.     

Optimization of bovine serum albumin sorption and recovery by hydrogels

Aqueous two-phase systems are composed of aqueous solutions of either two water-soluble polymers, usually polyethylene glycol (PEG) and dextran (Dx), or a polymer and a salt, usually PEG and phosphate or sulfate. Partitioning of proteins in such systems provides a powerful method for separating and purifying mixtures of biomolecules by extraction. If one of the phase forming polymers is a crosslinked gel, then the solution-controlled gel sorption may be considered as a modification of aqueous two-phase extraction. Since PEG/dextran systems are widely used in aqueous two-phase extraction and dextran gels (Sephadex) are common chromatographic media, we choose a PEG/dextran gel system as a model system in this study. The partitioning behavior of pure bovine serum albumin (BSA) in PEG/dextran gel systems is investigated to see the effects of variations in PEG and NaCl concentrations on the partition coefficient K. By making use of the Box-Wilson experimental design, K is shown to be maximized at 9.8 (%, w/w) PEG and 0.2 M NaCl concentrations, respectively, as 182.     

Imaging mass spectrometry for lipidomics

Matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) is a powerful tool that enables the simultaneous detection and identification of biomolecules in analytes. MALDI-imaging mass spectrometry (MALDI-IMS) is a two-dimensional MALDI-MS technique used to visualize the spatial distribution of biomolecules without extraction, purification, separation, or labeling of biological samples. This technique can reveal the distribution of hundreds of ion signals in a single measurement and also helps in understanding the cellular profile of the biological system. MALDI-IMS has already revealed the characteristic distribution of several kinds of lipids in various tissues. The versatility of MALDI-IMS has opened a new frontier in several fields, especially in lipidomics. In this review, we describe the methodology and applications of MALDI-IMS to biological samples.     

Studying biomolecular complexes with pulsed electron-electron double resonance spectroscopy

The function of biomolecules is intrinsically linked to their structure and the complexes they form during function. Techniques for the determination of structures and dynamics of these nanometre assemblies are therefore important for an understanding on the molecular level. PELDOR (pulsed electron-electron double resonance) is a pulsed EPR method that can be used to reliably and precisely measure distances in the range 1.5-8?nm, to unravel orientations and to determine the number of monomers in complexes. In conjunction with site-directed spin labelling, it can be applied to biomolecules of all sizes in aqueous solutions or membranes. PELDOR is therefore complementary to the methods of X-ray crystallography, NMR and FRET (fluorescence resonance energy transfer) and is becoming a powerful method for structural determination of biomolecules. In the present review, the methods of PELDOR are discussed and examples where PELDOR has been used to obtain structural information on biomolecules are summarized.     

Mobilization of cadmium from Festuca ovina roots and its simultaneous immobilization by soil in a root-soil-extractant system (in vitro test)

Mobilization of cadmium accumulated in Festuca ovina L. roots and simultaneous immobilization of this metal by soil were studied in three chambers connected into one system containing: (1) roots in an extractant solution, (2) soil in an extractant solution, and (3) extractant solution alone. Six extractants sterilized by filtration were used: 0.1 M NaNO₃ (NA), 0.1 mM desferrioxamine B (NA + DFOB) and 1 mM citric acid (NA + CA) in NA, and a water extract of soil (SE) supplemented with the same compounds. SE mobilized 53% of the Cd introduced to the system with roots. The addition of DFOB or CA to SE increased Cd extraction from roots by 17%, while the same compounds introduced to NA did not change mobilization of Cd (60% efficiency). Regardless of the extractant used, mobilization of Cd from roots was about 25% lower when extraction was done in a control system without soil. The metal released from roots was gradually immobilized by the soils loaded into all systems during a 4-day incubation. Sequential extractions of Cd from the soils showed that the metal released from roots with NA was stabilized mainly by soil Mn and Fe oxides, while that released with SE was stabilized by soil organic matter.     

A robust,cost‐effective method for DNA,RNA and protein co‐extraction from soil,other complex microbiomes and pure cultures

The soil microbiome is inherently complex with high biological diversity, and spatial heterogeneity typically occurring on the submillimetre scale. To study the microbial ecology of soils, and other microbiomes, biomolecules, that is, nucleic acids and proteins, must be efficiently and reliably co‐recovered from the same biological samples. Commercial kits are currently available for the co‐extraction of DNA, RNA and proteins but none has been developed for soil samples. We present a new protocol drawing on existing phenol–chloroform‐based methods for nucleic acids co‐extraction but incorporating targeted precipitation of proteins from the phenol phase. The protocol is cost‐effective and robust, and easily implemented using reagents commonly available in laboratories. The method is estimated to be eight times cheaper than using disparate commercial kits for the isolation of DNA and/or RNA, and proteins, from soil. The method is effective, providing good quality biomolecules from a diverse range of soil types, with clay contents varying from 9.5% to 35.1%, which we successfully used for downstream, high‐throughput gene sequencing and metaproteomics. Additionally, we demonstrate that the protocol can also be easily implemented for biomolecule co‐extraction from other complex microbiome samples, including cattle slurry and microbial communities recovered from anaerobic bioreactors, as well as from Gram‐positive and Gram‐negative pure cultures.     

Physiological aspects on catecholamine sampling

Catecholamine (CA) determinations are valuable tools in studies of sympatho-adrenal activity. However, several methodological problems should be considered when designing experiments and interpreting plasma CA results. The commonly assessed antecubital venous noradrenaline (NA) concentrations reflect local nerve activity, since about half of this NA is derived from the forearm tissues. Sympathetic nerve activity is not uniform, but may vary considerably between organs. Overall sympathetic activity is best assessed by measurements of NA in arterial or mixed venous blood. Venous adrenaline (ADR) levels may also be unrepresentative due to marked and variable extraction in the peripheral tissues. Urinary NA and ADR excretion studies still provide valuable information. Regional studies of NA overflow from individual organs give good estimates of local nerve activity and will increase the understanding of the functional organization of the sympathetic nervous system.     

Effects of noradrenaline and the blood perfusion rate on the oxygen consumption of intact and isolated muscles of cold-acclimated rats

The authors studied the effect of the blood perfusion rate and of noradrenaline (NA) on the oxygen consumption of the isolated hind limb and on the partly - and vascularly completely - isolated cranial gracilis muscle of cold-acclimated rats. Oxygen consumption of the limb was stimulated by a raised perfusion rate together with growth of the oxygen extraction coefficient and by NA, which also raised oxygen consumption when the perfusion rate was constant. Oxygen consumption of the partly isolated muscle was likewise stimulated by a raised perfusion rate, but without a simultaneous increase in the oxygen extraction coefficient. In the vascularly completely isolated muscle, a raised perfusion rate had only a transient stimulant effect on oxygen consumption. In the partly and the completely isolated muscle, NA raised the arteriovenous difference in the blood oxygen content and organ resistance independently of each other. The calorigenic effect of NA, which was determined by the ratio of the two effects, did not exceed 34% above the resting level. The conclusions that the thermogenesis of resting muscle can be controlled by the blood flow on the basis of a mechanism other than the limitation of oxygen or substrates supply, and that NA acts independently of oxygen extraction from the blood and of the blood flow, show the blood flow to be a mechanism at organ level, which participates in the control of nonshivering thermogenesis in skeletal muscle.