一株嗜盐菌新种的分离与鉴定

从舟山册子岛船舶压载水泥样中分离到一株细菌S3-22,其与已知细菌的16S rDNA序列相似性低于97%,G+C mol%为54.9 mol%,主要脂肪酸iso-C17:1ω9c(24.99%),细胞醌型为甲基萘醌MK-5。革兰氏染色阴性,最适生长条件为30～37℃、pH7、3%NaCl。嗜盐,氧化酶、接触酶、淀粉酶、酯酶呈阳性,可还原硝酸盐。依据其16S rDNA序列相似性、系统发育学分析及细胞与分子水平的鉴定表明,该菌是Kordiimonas属的一个新种,菌株S3-22的16S rDNA序列登陆号为FJ847942。     

大蒜内生细菌的分离及拮抗菌筛选与鉴定

利用常规分离方法对大蒜鳞茎进行内生细菌的分离,采用对峙法和平板涂布法对分离的内生菌进行拮抗试验研究,并对菌株DSP6进行16S rDNA全序列鉴定。结果表明:分离得到19株内生细菌,其中10株菌对2种以上植物病原真菌有不同程度的抑制作用,占分离菌总数的52.6%,DSN7对番茄早疫病的抑菌圈半径最大,为13mm;17株菌对5种病原细菌中至少1种有抑制作用,占分离菌总数的89.5%,其中菌株DSP3对大肠杆菌的抑菌圈半径最大,达到10 mm;菌株DSP6对供试的9种病原菌有较强的抑菌作用,且抑菌圈平均半径最大,为6.88mm;16S rDNA全序列鉴定显示,菌株DSP6与芽孢杆菌属Bacillus axarquiensis相似性为100%,表明菌株DSP6为Bacillus axarquiensis。     

1株血红蛋白分解菌的分离鉴定及其蛋白酶活力测定

为了获得能够有效降解利用屠宰场废弃血液的功能菌株,以日喀则地区屠宰场废弃血液堆积土壤样品为材料,将样品稀释涂布接种在血平板上进行分离,挑取水解圈最大的菌落进行平板划线纯化。对分离菌株进行形态学、生化反应试验、16S rDNA序列鉴定并测定其蛋白酶活性。筛选出1株能够高效降解血红蛋白的菌株命名为NwMCC01910042,该分离菌株为革兰阳性杆菌,V-P(Voges-Proskauer)试验阳性,枸橼酸盐利用、淀粉水解、明胶液化、16S rDNA序列系统进化分析显示NwMCC01910042菌株与Bacillus licheniformis ATCC 14580株的序列相似性为99.79%,与Bacillus licheniformis MSL3076株的序列相似性为99.30%,为地衣芽胞杆菌(Bacillus licheniformis),该菌株的16S rDNA序列已提交至GenBank,准入编号为MN 176417,其蛋白酶活力为188.63 U/mL。利用微生物降解生产氨基酸有机肥的关键是筛选蛋白酶的高产菌株,NwMCC01910042株菌有望作为将废弃血污降解为氨基酸的候选功能菌株。     

应用rpoB和16S rDNA基因的变性梯度凝胶电泳技术对山羊瘤胃细菌多样性的研究

采用免培养的rpoB和16S rDNA基因的变性梯度凝胶电泳技术(DGGE)对3种山羊(波尔山羊,内蒙古绒山羊,四川南江黄羊)瘤胃细菌优势菌群结构进行了比较分析。研究结果显示rpoBDGGE图谱中条带数目少于16S rDNA图谱,并且条带分离效果明显,更有利于分析瘤胃细菌群落组成。从两种DGGE图谱中均可以发现3种山羊瘤胃细菌具有一定的相似性,种内个体间相似性明显高于种间相似性,这说明寄主品种是影响瘤胃细菌种群构成的一个重要因素。同时进行了部分优势细菌16S rDNA基因V6-V8区序列的系统发育分析。基因序列分析表明,DGGE图谱中优势条带的16S rDNA基因序列中有4条克隆的序列与基因库最相似菌的相似性大于97%,余下的克隆序列相似性在89%～96%之间,其中13条序列的与之相似性最高的序列均来自于未被鉴定的瘤胃细菌。     

一株新的耐辐射菌WGR702的分离鉴定及耐辐射特性

从辐射污染的土壤中分离到一株新的耐辐射菌WGR702.该菌为革兰氏阳性球菌,直径1.5 μm～2.5μm.菌体呈粉红色、能运动、兼性厌氧及不产孢子.其生长温度和pH范围分别为10℃～35℃和pH 5.0～10.0.(G C)mol%含量为60.5%.UV和γ射线辐射检测表明WGR702具有很强的耐辐射性.16S rDNA序列(EU315117)分析表明,菌株 WGR702与沙雷氏菌属(Serratia)菌株16S rDNA序列有很高相似性(94.79%～98.53%),但与沙雷氏菌属已报道菌株最大不同点是菌株WGR702细胞为球状,且革兰氏阳性.结合形态、生理生化特征分析表明菌株WGR702可能是沙雷氏菌属(Serratia)的一个新种.     

内蒙古碱湖中紫色非硫光合细菌的分离和鉴定

从内蒙古碱湖水样中分离得到一株紫色非硫光合细菌,命名为JH1-6.对该菌株进行了形态学观察、生理生化鉴定、活细胞吸收光谱以及16S rDNA序列分析.16S rDNA序列分析结果表明该菌株与沼泽红假单胞菌的16S rDNA序列同源性高达99%,结合形态特征和生理生化特性以及活细胞吸收光谱特征等,确定菌株JH1- 6在分类地位上属于沼泽红假单胞菌(Rhodopseudomonas palustris).     

南极普利兹湾夏季海冰不同层次细菌丰度及多样性

[目的]为了解南极普利兹湾夏季海冰不同层次中细菌群落丰度及组成.[方法]利用荧光原位杂交技术对海冰不同层次中细菌进行定量研究,通过构建16S rRNA基因文库对海冰不同层次中细菌进行多样性分析,并结合环境因子进行相关性分析.[结果]荧光原位杂交结果表明,细菌占海冰总细胞数比例随着海冰层次下降呈现上升趋势,初步推断可能受海冰中总有机碳,总有机氮以及磷酸盐影响所致.16SrRNA基因文库分析结果表明,上、中、底3个海冰分层样品获得的16S rRNA基因序列归属于γ-变形细菌纲(γ-Proteobacteria),α-变形细菌纲(α-Proteobacteria)以及拟杆菌门(Bacteroidetes),多数16S rRNA基因序列与分离培养自海洋环境、南北极海冰菌株的16S rRNA基因序列相似性较高(90％-99％);在海冰底部样品中未检测到拟杆菌门;海冰不同层次中,细菌组成呈现些微的差异性,可能由铵离子在海冰不同层次的分布造成.[结论]海冰底部细菌数量最丰富.在海冰中,γ-变形细菌纲为优势类群.     

一株新的胡萝卜软腐欧文氏菌的分离和鉴定

从大白菜软腐组织中分离出一株软腐病细菌BC1,经过形态观察、生理生化特性分析、致病性检测和16S rDNA序列分析,该分离物被鉴定为胡萝卜软腐欧文氏菌胡萝卜亚种（Erwinia carotovora subsp. carotovora, Ecc）的一个新菌株,编号为BC1。这是首次从16S rDNA序列水平上对在我国分布的软腐欧文氏菌进行鉴定。Ecc BC1的16S rDNA序列与其它软腐欧文氏菌株的16S rDNA序列之间同源性达987%～993%,而且在系统发育树中独立于Ecc其它菌株。序列分析结果表明,Ecc BC1具有至少2种不同的16S rDNA序列,它们都在第459位和473位（相对于大肠杆菌16S rDNA序列）发生碱基突变,同一基因中两个突变位点之间彼此互补,处于16S rRNA螺旋H17颈部,而且这两处碱基变异只存在于BC1菌株中。通过与其它软腐欧文氏菌亚种和菌株16S rDNA序列进行比对分析,还进一步鉴定出一些BC1菌株特异的16S rDNA碱基突变位点。本文报道的Ecc BC1两个16S rDNA序列在GenBank中的登录号分别为AY309068和AY309069。     

金川镍矿可培养细菌的多样性及耐镍菌株筛选

目的:了解金川镍矿可培养细菌的多样性和分离筛选有较高镍耐受性的菌株.方法:2007年8月从金川镍矿采集土壤样品,经过在TSA固体培养基上稀释涂布和划线分离得到55株纯培养菌株,对分离的所有菌株均提取基因组DNA,利用通用引物27F和1492R扩增得到16S rDNA的序列并测序,同时利用含不同浓度镍离子的MH培养基对所分离的菌株做了MIC分析.结果:55株菌属于11个属14个分类单元(16S rDNA序列相似性在97%以上为同一个分类单元),其中2株属于变形菌门γ亚群(Gammaproteobaaeria)(3.6%)、3株属于变形菌门α亚群(Alphaproteobacteria)(5.5%)、12株属于厚壁菌门(Firmicutes)(21.8%)、38 株属于放线菌门(Actinobacteria)(69.1%),优势菌是节杆菌属(60%),其中菌株C4、D3、D7的MIC最高达到20mmol/L.结论:金川镍矿有着较丰富的细菌多样性,菌株C4、D3、D7有潜在的应用价值.     

耐高温海藻糖合酶产生菌鉴定及生长特性研究

目的:从蒙古一处高温温泉水中分离产耐高温海藻糖合酶的嗜热菌株,并确定该菌株的分类学地位。方法:通过研究其形态特征、培养特征、生理生化特征和16S rDNA序列,根据《伯杰氏细菌鉴定手册》进行菌种分类鉴定,同时并对其生长特性进行初步研究。结果:筛选出的嗜热菌株SN02004-01具有芽孢杆菌的典型特征,其16S rDNA序列与GenBank中的Bacillus sp.E26311的亲缘关系最近,二者的16S rDNA序列相似性为99.9%;该菌的最适pH、最适生长温度分别为pH7.0、65℃。结论:极端环境(高温)中也存在具有产生耐高温海藻糖合酶的嗜热微生物。     

Diversity and association of psychrophilic bacteria in Antarctic sea ice.

The bacterial populations associated with sea ice sampled from Antarctic coastal areas were investigated by use of a phenotypic approach and a phylogenetic approach based on genes encoding 16S rRNA (16S rDNA). The diversity of bacteria associated with sea ice was also compared with the bacterial diversity of seawater underlying sea ice. Psychrophilic (optimal growth temperature, < or = 15 degrees C; no growth occurring at 20 degrees C) bacterial diversity was found to be significantly enriched in sea ice samples possessing platelet and bottom ice diatom assemblages, with 2 to 9 distinct (average, 5.6 +/- 1.8) psychrophilic taxa isolated per sample. Substantially fewer psychrophilic isolates were recovered from ice cores with a low or negligible population of ice diatoms or from under-ice seawater samples (less than one distinct taxon isolated per sample). In addition, psychrophilic taxa that were isolated from under-ice seawater samples were in general phylogenetically distinct from psychrophilic taxa isolated from sea ice cores. The taxonomic distributions of psychrotrophic bacterial isolates (optimal growth temperature, > 20 degrees C; growth can occur at approximately 4 degrees C) isolated from sea ice cores and under-ice seawater were quite similar. Overall, bacterial isolates from Antarctic sea ice were found to belong to four phylogenetic groups, the alpha and gamma subdivisions of the Proteobacteria, the gram-positive branch, and the Flexibacter-Bacteroides-Cytophaga phylum. Most of the sea ice strains examined appeared to be novel taxa based on phylogenetic comparisons, with 45% of the strains being psychrophilic. 16S rDNA sequence analysis revealed that psychrophilic strains belonged to the genera Colwellia, Shewanella, Marinobacter, Planococcus, and novel phylogenetic lineages adjacent to Colwellia and Alteromonas and within the Flexibacter-Bacteroides-Cytophaga phylum. Psychrotrophic strains were found to be members of the genera Pseudoalteromonas, Psychrobacter, Halomonas, Pseudomonas, Hyphomonas, Sphingomonas, Arthrobacter, Planococcus, and Halobacillus. From this survey, it is proposed that ice diatom assemblages provide niches conducive to the proliferation of a diverse array of psychrophilic bacterial species.     

Influence of crude oil on changes of bacterial communities in Arctic sea-ice

The danger of a petroleum hydrocarbon spillage in the polar, ice-covered regions is increasing due to oil exploration in Arctic offshore areas and a growing interest in using the Northern Sea Route (NSR) as an alternative transportation route for Arctic oil and gas. However, little is known about the potential impact of accidental oil spills on this environment. We investigated the impact of crude oil on microbial community composition in six different Arctic sea-ice samples incubated with crude oil at 1 degrees C in microcosms for one year. Alterations in the composition of bacterial communities were analyzed with the culture-independent molecular methods DGGE (denaturing gradient gel electrophoresis) and FISH (fluorescence in situ hybridization). DGGE, FISH and cultivation methods revealed a strong shift in community composition toward the gamma-proteobacteria in sea-ice and melt pool samples incubated with crude oil. Marinobacter spp., Shewanella spp. and Pseudomonas spp. were the predominant phylotypes in the oil-treated microcosms. The ability of indigenous sea-ice bacteria to degrade hydrocarbons at low temperature (1 degrees C) was tested using four representative strains cultivated from sea-ice enriched with crude oil. [14C]Hexadecane was degraded by the sea-ice isolates at 20-50% capacity of the mesophilic type strain Marinobacter hydrocarbonoclasticus, a known hydrocarbon degrader, incubated at 22 degrees C.     

Influence of temperature on the growth potential of Southern polar marine bacteria

Regular surveys of heterotrophic microflora from seawater were conducted in the subantarctic (Kerguelen archipelago) and Antarctic (Terre Adélie area). Although a predominance of psychrophilic bacteria could be expected for such polar marine environments, there were no significant differences between results obtained after incubation at two different temperatures (4°C for 21 days or 18°C for 6 days). To investigate this further, four sets of bacterial strains were isolated from the subantarctic area (early fall, late fall, spring, and summer) and one set of Antarctic bacteria was isolated in summer. The growth rates of the 143 strains collected were determined at four different temperatures (4, 7, 20, and 30°C). The results clearly indicated that a large majority of the isolated bacteria must be considered psychrotrophic and not truly psychrophilic strains.     

渤海沉积物产脂肪酶细菌的筛选及其多样性分析

【目的】从渤海沉积物中分离筛选产脂肪酶细菌,分析其物种多样性,增加人们对渤海生态系统中产脂肪酶菌多样性的认识,获取高效产脂肪酶菌株,为海洋产脂肪酶微生物的挖掘提供菌群资源。【方法】分别将8个渤海沉积物样品梯度稀释涂布至吐温-80筛选平板和三丁酸甘油酯筛选平板,选择性分离产脂肪酶细菌;分析基于16SrRNA基因序列的系统发育关系,揭示这些细菌的分类地位和遗传多样性;利用对硝基苯酚法测定胞外脂肪酶活性,筛选出高效产脂肪酶菌株。【结果】从8个渤海沉积物样品中分离获得51株产脂肪酶细菌,这些菌株隶属于Bacteroidetes、Proteobacteria和Firmicutes三个门的8个属,其中Pseudoalteromonas(35.2%)、Marinobacter(23.5%)和Sulfitobacter(17.6%)是优势菌群;脂肪酶酶活性实验表明所有测定菌株都能够分泌脂肪酶,菌株70623分泌的脂肪酶酶活最高,为42.4 U/m L。【结论】渤海沉积物中可培养产脂肪酶细菌类群较为丰富,Pseudoalteromonas、Marinobacter和Sulfitobacter菌株是优势菌群,测定菌株所产胞外脂肪酶能力不同,获得了一株高效产脂肪酶菌株Marinobacter sp.70623。     

降雨对秦皇岛西浴场细菌总数和可培养菌群组成的影响

【目的】研究降雨条件对浴场细菌总数和优势菌群组成的影响。【方法】2014年8月强降雨前后采集秦皇岛西浴场3个站位的海水样品,采用荧光显微镜计数法和平板计数法分别对细菌总数和可培养细菌总数进行计数;对群落结构组成进行分析,并对可培养细菌进行鉴定。【结果】雨前3个站位细菌总数和可培养细菌总数平均值分别为5.6×10~9 CFU/L和8.3×10~7 CFU/L,雨后分别为9.2×109 CFU/L和2.1×10~8 CFU/L。在可培养菌群中,变形菌门(Proteobacteria,雨前占80%,雨后占73%)是主要的微生物类群,其次为拟杆菌门(Bacteroides,雨前占12%,雨后占13%)、厚壁菌门(Firmicutes,雨前占7%,雨后占11%)等;肠杆菌属(Enterobacter spp.,21株)、海杆菌属(Marinobacter spp.,13株)、弓形菌属(Arcobacter spp.,13株)、假单胞菌属(Pseudomonas spp.,10株)、芽孢杆菌属(Bacillus spp.,10株)和弧菌属(Vibrio spp.,6株)为雨前可培养细菌优势属,而雨后可培养细菌优势属为肠杆菌属(22株)、海杆菌属(21株)、芽孢杆菌属(14株)、不动杆菌属(Acinetobacter spp.,11株)、假单胞菌属(9株)和弓形菌属(5株)等。【结论】降雨对细菌总数有显著的影响,同时降雨后浴场微生物群落结构发生了改变。     

Modelled and measured dynamics of viruses in Arctic winter sea-ice brines

We describe a model based on diffusion theory and the temperature-dependent mechanism of brine concentration in sea ice to argue that, if viruses partition with bacteria into sea-ice brine inclusions, contact rates between the two can be higher in winter sea ice than in seawater, increasing the probability of infection and possible virus production. To examine this hypothesis, we determined viral and bacterial concentrations in select winter sea-ice horizons using epifluorescence microscopy. Viral concentrations ranged from 1.6 to 82 x 10(6) ml(-1) of brine volume of the ice, with highest values in brines from coldest (-24 to -31 degrees C) ice horizons. Calculated virus-bacteria contact rates in underlying -1 degrees C seawater were similar to those in brines of -11 degrees C ice but up to 600 times lower than those in ice brines at or below -24 degrees C. We then incubated native bacterial and viral assemblages from winter sea ice for 8 days in brine at a temperature (-12 degrees C) and salinity ( approximately 160 psu) near expected in situ values, monitoring their concentrations microscopically. While different cores yielded different results, consistent with known spatial heterogeneity in sea ice, these experiments provided unambiguous evidence for viral persistence and production, as well as for bacterial growth, in -12 degrees C brine.     

Psychrophilic versus psychrotolerant bacteria--occurrence and significance in polar and temperate marine habitats.

The numerical dominance and ecological role of psychrophilic bacteria in bottom sediments, sea ice, surface water and melt pools of the polar oceans were investigated using isolates, colony forming units (CFU) and metabolic activities. All sediment samples of the Southern Ocean studied showed a clear numerical dominance of cold-loving bacteria. In Arctic sediments underlying the influence of cold polar water bodies psychrophiles prevailed also but they were less dominant in sediments influenced by the warm Atlantic Water. A predominance of psychrophiles was further found in consolidated Antarctic sea ice as well as in multiyear Arctic sea ice and in melt pools on top of Arctic ice floes. A less uniform adaptation response was, however, met in polar surface waters. In the very northern part of the Fram Strait (Arctic Ocean) we found bacterial counts and activities at 1 degree C exceeding those at 22 degrees C. In surface water of the Weddell Sea (Southern Ocean) psychrophiles also dominated numerically in early autumn but the dominance declined obviously with the onset of winter-water and a decrease of chlorphyll a. Otherwise in surface water of the Southern Ocean CFUs were higher at 22 degrees C than at 1 degree C while activities were vice versa indicating at least a functional dominance of psychrophiles. Even in the temperate sediments of the German Bight true psychrophiles were present and a clear shift towards cold adapted communities in winter observed. Among the polar bacteria a more pronounced cold adaptation of Antarctic in comparison with Arctic isolates was obtained. The results and literature data indicate that stenothermic cold adapted bacteria play a significant role in the global marine environment. On the basis of the temperature response of our isolates from different habitats it is suggested to expand the definition of Morita in order to meet the cold adaptation strategies of the bacteria in the various cold habitats.     

Extracellular enzymes of cold-adapted bacteria from Arctic sea ice,Canada Basin

A total of 338 aerobic heterotrophic bacterial strains were isolated from Arctic sea ice, Canada Basin (77°30′N–80°12′N). The capability of the isolates to produce protease, lipase, amylase, chitinase, β-galactosidase, cellulase and/or agarase was investigated. Isolates that were able to degrade tributyrin, skim milk, starch, lactose and chitin accounted for 71.6, 65.7, 38.5, 31.6 and 16.9% of sea ice strains, respectively. Lipase producers and/or protease producers were phylogenetically widespread among the isolated strains. Starch and/or lactose hydrolytic strains were mainly distributed among Colwellia, Marinomonas, Pseudoalteromonas, Pseudomonas and Shewanella isolates. Pseudoalteromonas tetraodonis, Pseudoalteromonas elyakovii, Bacillus firmus and Janibacter melonis isolates all have the ability to degrade chitin. Only some strains belonging to Pseudoalteromonas genus scored positive for agarase (6) and cellulose (9). The temperature dependences for lipase activities were determined for five psychrophilic and six psychrotolerant bacteria. At low temperatures, the psychrophilic bacterial lipase activity was not significantly higher than psychrotolerant bacterial lipase, though all lipases showed remarkably high activity with 10–36% residual activity at 0°C.     

Biomarker techniques to screen for bacteria that produce polyunsaturated fatty acids.

The production of polyunsaturated fatty acids (PUFA) by bacteria has been firmly established for over two decades although it is still commonly ignored. Investigations of Antarctic sea ice have revealed a high diversity of novel bacterial taxa with the ability to produce PUFA. The majority are psychrophilic (requiring low temperatures for growth) and halophilic (requiring the presence of salts for growth), in contrast to the bacterial community present in the underlying water column. Specific fatty acids may be used as indicators of PUFA-producing bacteria in environmental samples. Structural studies of bacterial phospholipids have been particularly revealing in suggesting biomarkers specific for prokaryotic PUFA input. The use of negative ion fast atom bombardment tandem mass spectrometry for the analysis of bacterial phospholipids has identified species specific for certain groups of bacterial PUFA producers. The phylogeny of PUFA production in the gamma-Proteobacteria also suggests the future use of PUFA genes for the assessment of marine bacterial biodiversity.