2010～2012年华中地区猪流行性腹泻病毒分子特征和遗传进化分析

2010年底开始,猪流行性腹泻(Porcine epidemic diarrhea,PED)在中国境内出现严重暴发。为探讨该病突然再次暴发的原因,对2010年10月至2012年6月于华中地区11个地市收集的12株猪流行性腹泻病毒(Porcineepidemic diarrhea virus,PEDV)S、M和ORF3基因进行RT-PCR扩增、克隆及测序,并对其序列变化、遗传进化关系、抗原位点、糖基化位点和多肽极性进行分析。结果显示,12株PEDV流行毒株S、M和ORF3基因部分核苷酸及氨基酸的改变使其关键序列明显不同于以往毒株,其中有11株流行毒株的S基因比现用疫苗毒株CV777多9个核苷酸,而且在其S1区N′端存在大量的氨基酸突变。遗传进化分析显示,12株PEDV华中地区毒株与2007～2009年韩国毒株、2007～2008年泰国毒株、2009～2010年越南毒株、2011年日本毒株及2010～2012年中国其它地区流行毒株亲缘关系均较密切,而与欧洲株(CV 777、Br1/87)、中国现用疫苗株(CV777)及2003～2007年中国分离株(LJB/03、JS-2004-2、DX、QH、LZC)亲缘关系均较远。与现用疫苗株(CV777)相比,流行毒株S蛋白的抗原位点、糖基化位点和跨膜螺旋均有明显改变,提示PEDV在近年呈现快速变异和进化的趋势,因而可能需要选择更有效的疫苗株来控制PEDV的暴发。     

PEDV流行株的分离鉴定及其遗传进化分析

为了解中国猪流行性腹泻病毒(Porine epidemic diarrhea virus,PEDV)的流行现状,本研究对上海和江苏地区猪场进行了PEDV流行株的分离鉴定。根据GenBank中PEDV的基因序列,对其M基因设计检测引物。检测临床采集的猪腹泻样品,2份临床样品能扩增出特异性目的条带,测序结果证实为PEDV M基因片段。将检测为PEDV阳性的样品接种Vero细胞,并添加不同浓度的胰酶进行病毒传代培养,在添加适量胰酶的Vero细胞上分离到两株病毒并能稳定传代、增殖。选择第22代病毒饲喂新生仔猪,进行回归试验,结果两株细胞毒均能使1日龄仔猪出现典型腹泻症状,进一步证实成功分离到PEDV,命名为JSLS/PEDV/1/2014和JS/PEDV/2/2014株。遗传进化分析,JS/PEDV/2/2014和JSLS/PEDV/1/2014分离株的M基因分别与中国毒株HLJ-2012、BJ-2012-1亲缘性最近;S基因与I群PEDV流行毒株亲缘性最近;两个毒株的ORF3基因均存在51个碱基缺失,与DR13处于同一大分支,与CV777亲缘性较远。     

猪流行性腹泻病毒流行株S蛋白高变区B细胞线性表位肽的鉴定

【背景】对猪流行性腹泻病毒(Porcine epidemic diarrhea virus,PEDV)经典毒株与流行毒株S蛋白氨基酸序列比对显示,变异位点主要集中在S蛋白的N端。【目的】鉴定PEDV流行毒株S蛋白高变区(S10A,1-496 aa)的B细胞线性表位肽,特别是流行毒株特异性B细胞表位肽。【方法】以SDS-PAGE割胶纯化大肠杆菌表达的PEDV流行株SD2014 S蛋白高变区片段(S10ASD2014),免疫新西兰大白兔制备多克隆抗体;在E. coli中谷胱甘肽巯基转移酶(Glutathione S-transferase,GST)融合表达覆盖S10ASD2014序列全长且彼此重叠8个氨基酸残基的系列16肽。以制备的抗S10ASD2014多抗为一抗,通过Western blot筛选系列16肽中的阳性反应性16肽,鉴定S10ASD2014上的B细胞线性表位肽;利用抗PEDV经典毒株(CV777)S蛋白高变区片段(S10ACV777)多抗血清鉴定S10ASD2014上的保守性B细胞线性表位肽。【结果】重组表达的S10ASD2014相对分子质量约为72 kD;纯化的S10ASD2014表位肽能被PEDV阳性血清识别。制备的抗S10ASD2014多抗可以识别PEDV DR13弱毒株。利用抗S10ASD2014血清和抗S10ACV777血清从61个GST融合表达的16肽中鉴定到28个阳性反应16肽,其中13个为2种血清共同识别16肽。对24株PEDV不同亚群代表毒株的对应区域进行同源性分析表明2个阳性16肽为保守性表位肽。【结论】确定了PEDV流行株SD2014 S蛋白高变区的B细胞线性表位肽,B细胞线性表位肽,特别是流行毒株特异性表位肽的确定有助于了解S蛋白的结构与功能,为建立以表位为基础的PEDV感染检测方法打下良好基础。     

猪流行性腹泻病毒地方株LJB/03分离及培养特性

从黑龙江省某猪场疑为病毒性腹泻的发病猪采集腹泻粪便样品,以RT-PCR法扩增出猪流行性腹泻病毒M基因后,采用细胞培养法进行病毒分离。对细胞培养分离物进行间接免疫荧光、免疫电镜观察、RT-PCR及ELISA法检验,其中间接免疫荧光试验可见培养细胞中存在明显的特异性绿色荧光;免疫电镜下可见大小符合预期、有囊膜、花瓣状的典型冠状病毒结构特征;RT-PCR检测证实存在PEDVM基因;间接ELISA检测中平均P/N比值为7.6;从而确认为分离到一株猪流行性腹泻病毒(Porcine epidemic diarrhea virus,PEDV),命名为PEDVLJB/03株。随后,对该分离毒株的培养特性及如何提高病毒滴度进行探索。通过摸索该分离毒株的蚀斑形成条件,建立了PEDV蚀斑形成方法,并采用该方法进行病毒的蚀斑纯化,纯化得到PEDV大蚀斑克隆株和小蚀斑克隆株。对大、小两种蚀斑克隆株的病毒滴度测定结果表明,大小蚀斑克隆株细胞感染滴度相差明显。     

猪流行性腹泻病毒S基因片段的克隆及原核表达

为研究猪流行性腹泻病毒(porcine epidemic diarrhea virus PEDV)S基因片段的原核表达产物是否具有抗原性,分析S基因抗原位点后,用PCR技术扩增S蛋白主要抗原区的核酸序列,经克隆后将目的片段连接到原核表达载体pET-28a(+)中,成功构建了重组质粒pET-28a-PEDV-Sp,其重组菌于37℃、0.5 mmol/L IPTG诱导表达4 h后进行SDS-PAGE分析,在分子质量约为29 kDa处出现一新蛋白带,与预期相符。质谱鉴定表明,已成功表达了目的蛋白。纯化后的重组蛋白免疫兔制备多克隆抗体,抗体效价检测结果显示该蛋白具有良好的抗原性。该研究为猪流行性腹泻基因工程疫苗的研制奠定基础。     

表达PEDV S和PoRV VP7蛋白的重组伪狂犬毒株构建

【背景】猪流行性腹泻、猪轮状病毒病与猪伪狂犬病是严重危害全球养猪业的3种重要传染病,混合感染往往导致猪场更严重的损失。【目的】利用同源重组技术构建共表达猪流行性腹泻病毒(Porcine epidemic diarrhea virus,PEDV) S蛋白和猪轮状病毒(Rotavirus,PoRV) VP7蛋白的猪伪狂犬三联基因工程疫苗株,并研究其部分生物学特性。【方法】通过序列比对、蛋白结构分析筛选s基因的475?804 aa和vp7基因的17?339 aa作为毒株构建的目的片段,依次构建了pMD-S、pMD-VP7、pMD-VP7.S克隆载体和pEGFP-VP7.S转移载体。将质粒pEGFP-VP7.S和PRV XJ亲本株同源重组,空斑纯化得到重组毒株PRV (CM),对其稳定性和增殖特性进行研究。【结果】构建了共表达S蛋白和VP7蛋白的伪狂犬基因工程病毒,连续传代20次,均能检测到vp7和s基因,而gE基因阴性;Western blotting证实2种外源基因在重组病毒中均能实现良好的表达;测定亲本毒株和重组毒株的TCID50分别是10?7.59/0.1 mL和10?7.25/0.1 mL。【结论】获得了伪狂犬基因工程重组弱毒株PRV (CM),外源基因稳定存在,毒力基因稳定缺失,增殖特性差异不大,为PRV、PEDV和PoRV基因工程三联苗研究奠定了基础。     

蓝舌病毒血清5型毒株S7基因编码区的分子克隆与序列分析

目的:对蓝舌病毒(BTV)血清5型毒株(BTV-5)的S7基因编码区(ORF)进行克隆和序列分析。方法:用TRIzol LS试剂提取病毒总RNA,经反转录-聚合酶链反应(RT-PCR)扩增BTV-5型毒株S7基因的编码区,将扩增片段克隆到pGEM-T Easy载体上,对阳性克隆进行核苷酸序列测定;采用DNAStar和DNASIS v2.5软件对环状病毒属不同种群的S7基因ORF序列及其推导的氨基酸序列进行同源性及系统进化树分析。结果:克隆的基因片段长1050bp,为S7基因开放性读码框的全长序列,编码349个氨基酸残基;与环状病毒属不同血清型毒株比较,核酸序列同源性范围为42.2%～96.6%,推导的氨基酸序列同源性范围为40.4%～99.7%。结论:蓝舌病毒与非洲马瘟病毒、鹿流行性出血热病毒分属于不同种群,群内不同血清型的S7基因ORF序列及其推导的氨基酸序列显示出很高的同源性,而不同种群之间的同源性很低。     

猪流行性腹泻病毒单克隆抗体及其抗原表位的研究进展

猪流行性腹泻(Porcine epidemic diarrhea,PED)是由猪流行性腹泻病毒(PED virus,PEDV)引起的一种严重危害养猪生产的常见疫病。近年来,由于新的PEDV变异毒株的出现,许多国家的养猪业遭受了巨大的经济损失。PEDV也因此受到更多关注,关于PEDV的研究报道也日渐增多。基于国内外有关PEDV的最新研究进展,本文系统归纳和分析了PEDV结构蛋白和非结构蛋白单克隆抗体以及单克隆抗体识别的特异性抗原表位,以期为开发鉴别诊断方法和表位疫苗等提供信息。     

猪源新城疫病毒JL01株分离鉴定及F基因遗传进化分析

2000年,在吉林省某猪场发生具有较高发病率和死亡率的急性传染病,发病率达到40%～50%,病死率15%,取其脾、肺、肾等组织进行电镜观察,可见副粘病毒样颗粒,表明其病原可能为某种猪源副粘病毒,命名为JL01株。在对该病毒的的血凝、血凝抑制等生物学特性进行鉴定后,初步确定该种猪副粘病毒为猪源新城疫病毒。病毒回归试验表明,纯化的病毒对猪仍有较强的致死性,并可从死亡猪体内分离到新城疫病毒。该病毒对鸡胚平均致死时间(MDT)、脑内致病指数(ICPI)和半数致死量(EID50)分别为55.2h、1.60和10-7.5/0.1 mL,表明该毒株属于新城疫病毒强毒株。在此基础上,采用RT-PCR方法克隆了猪源新城疫病毒F基因,与其他10株NDV毒株进行序列比较分析,结果表明,JL01株与B1、LaSota、Clone30等经典的新城疫病毒弱毒株同源性较高(91.5%～98.5%),与ZJ1、Mukteswar等强毒株的同源性较低。F基因氨基酸裂解位点的序列为112G-K-Q-G-R-L117,与弱毒株序列完全相同。基因分型结果表明JL01株属于基因Ⅰ型。因此,本研究所分离到感染猪的新城疫病毒属于基因变异的新城疫病毒弱毒株...     

6株O型口蹄疫病毒结构蛋白vp1基因的克隆与序列分析

提取6株O型口蹄疫病毒(FMDV)(T1-T6)的RNA,用一对通用引物经RT-PCR方法将6株FMDVVP1基因片段扩增出来.克隆测序,核苷酸序列分析表明,T1-T6六株vp1基因的核苷酸序列同源性在95%～99.8%之间,氨基酸序列同源性在94.8%～100%之间.T1-T6六株病毒vp1基因的核苷酸序列与已经发表的O/HKN/14/82、O/TAW/81/97、O/PHI/7/96、O/HKN/1/99和O/HKN/16/96的同源性较高,核苷酸序列同源性在86.1%～95.8%之间;发现6株毒株的主要中和抗原表位140-160、200-213位的氨基酸序列完全相同,推测它们有相近的中和抗体表位和抗原性.故推断本试验中的6株FMDV株属于同一基因型,即FMDV O型中国拓朴型(Cathaytopotype).     

Molecular Characterization and Phylogenetic Analysis of Porcine Epidemic Diarrhea Viruses Associated with Outbreaks of Severe Diarrhea in Piglets in Jiangxi,China 2013

Porcine epidemic diarrhea (PED), caused by porcine epidemic diarrhea virus (PEDV), is a highly contagious, acute enteric viral disease of swine characterized by vomiting, watery diarrhea, dehydration and death. To identify and characterize the field PEDVs associated with the outbreaks of severe diarrhea in piglets in Jiangxi, 2013, the complete genome sequences of two representative strains of PEDV, designated CH/JX-1/2013 and CH/JX-2/2013, were determined and analyzed. The genome sequences of both emergent Jiangxi PEDV strains, CH/JX-1/2013 and CH/JX-2/2013, were 28,038 nucleotides in length excluding 3’ poly (A) tail. Compared to the PEDV CV777 strain, CH/JX-1/2013 and CH/JX-2/2013 had some unique genetic characteristics in the proximal region of the 5´-UTRs. Phylogenetic analysis of the complete genomes and the structural proteins revealed that CH/JX-1/2013 and CH/JX-2/2013 had a close relationship with post-2010 Chinese PEDV strains and US strains identified in 2013. The nucleotide identity between the two Jiangxi strains (CH/JX-1/2013 and CH/JX-2/2013) and 30 strains of PEDV identified ante-2010 and post-2010 ranged from 96.3–97.0% and 97.3–99.7%, respectively. Multiple nucleotide and deduced amino acid mutations were observed in the ORF1a/b, S, ORF3, E, M and N genes among the current field PEDV strains when compared to the CV777 strain. Some of the mutations altered the amino acid charge and hydrophilicity, and notably, there was an amino acid substitution in the middle of one neutralizing epitope (L1371I) of the S gene of both CH/JX-1/2013 and CH/JX-2/2013. Taken together, the accumulated genetic variations of the current field PEDV strains might have led to antigenic changes of the viruses, which might confer the less effectiveness or failure of the CV777-based vaccines currently being widely used in Jiangxi, China.     

犬冠状病毒大熊猫株纤突蛋白全基因的克隆与序列分析

在国内首次对犬冠状病毒大熊猫野毒株(CCV DXMV)纤突蛋白基因进行了克隆和序列测定.该基因全长4362bp,编码1453个氨基酸,N端前18个氨基酸为推测的信号肽序列,后1435个氨基酸构成成熟蛋白.与GenBank中已发表的11个CCV毒株S基因相比,S基因核苷酸序列同源性在40.2%～99.5%之间;推导的氨基酸序列同源性在15.9%～99.0%之间.DXMV株S基因变异区主要集中在该基因前1/2处,其中350-370、439-478、1718-1818三个区域碱基变异较大,而1060-1700区却十分保守.基于S全基因及其蛋白的聚类分析表明,DXMV株与K378、NVSL和US patent株亲源关系最近.推导的DXMV株S蛋白氨基酸序列潜在的N-联糖基化位点与CCV强毒V54相同,为34个,比Insavc-1弱毒多一个;其中第566-568位糖基化位点为多数强毒拥有而弱毒没有的.另外,DXMV株S蛋白疏水性及抗原表位与其它毒株有一定的差异,这些差异对DXMV株致病性和免疫原性等影响尚待进一步的研究.     

Cloning and sequence analysis of the Korean strain of spike gene of porcine epidemic diarrhea virus and expression of its neutralizing epitope in plants

Porcine epidemic diarrhea virus (PEDV) causes acute diarrhea and dehydration in pigs and leads to death with a high mortality rate, which has been reported notably in Korea. The spike (S) gene of the PEDV isolated in Korea was cloned and sequenced. The nucleotide sequence encoding the entire S gene open reading frame of Korean strain was 4161 bases long encoding 1387 amino acids. The neutralizing epitope of Korean PEDV (K-COE) was expressed in tobacco plants using Agrobacterium-mediated protein transformation. The recombinant K-COE constituted up to 0.1% of the total soluble protein in the leaves of transgenic tobacco plants. The result of this study opens the way for the development of an edible vaccine against PEDV infection in Korea.     

Isolation and characterization of a variant porcine epidemic diarrhea virus in China

ABSTRACT: An outbreak of diarrhea in pigs started in Guangdong, South China in January 2011. Cases were characterized by watery diarrhea, dehydration and vomiting, with 80--100% morbidity and 50--90% mortality in suckling piglets. The causative agent of the diarrhea was ultimately identified as porcine epidemic diarrhea virus (PEDV). In this study, we isolated a PEDV strain designated CHGD-01 from piglet intestines using Vero cell cultures, and its specific cytopathic effects were confirmed in susceptible cells by direct immunofluorescence testing and electron microscopy. The complete genome of CHGD-01 was shown to be 28,035 nucleotides in length, with a similar structure to that of PEDV reference strains. Phylogenetic analyses based on the whole genome revealed that CHGD-01 shared nucleotide sequence identities of 98.2--98.4% with two other Chinese isolates reported in the same year, thus constituting a new cluster. Amino acid sequence analysis based on individual virus genes indicated a close relationship between the spike protein gene of CHGD-01 and the field strain KNU0802 in Korea. Its ORF3 and nucleoprotein genes, however, were divergent from all other sequenced PEDV isolate clusters and therefore formed a new group, suggesting a new variant PEDV isolate in China. Further studies will be required to determine the immunogenicity and pathogenicity of this new variant.     

Identification of the epitope region capable of inducing neutralizing antibodies against the porcine epidemic diarrhea virus

In order to identify the neutralizing epitope of the porcine epidemic diarrhea virus (PEDV), the spike protein region that is presumed to contain the virus-neutralizing epitope was determined. This was based on the sequence information for the neutralizing epitope of the transmissible gastroenteritis virus (TGEV). A recombinant protein that corresponds to the spike region of TGEV was produced, and polyclonal antisera were generated using the recombinant protein. It was discovered that polyclonal antisera significantly inhibited plaque formation by PEDV, suggesting that this region of the spike protein contains the epitope(s) that is capable of inducing PEDV-neutralizing antibodies. In addition, the region that corresponds to the neutralizing epitope of TGEV may also be involved in neutralizing PEDV, although the two viruses are serologically quite distinct. Finally, the amino acid sequences that are deduced from the genes for the determined-neutralizing epitope were highly homologous among the PEDV strains that were isolated from different geographical areas, which suggests conservation of the antigen gene.     

Complete genome sequence of a Chinese virulent porcine epidemic diarrhea virus strain

CH/S is a virulent porcine epidemic diarrhea virus (PEDV) strain and is used as the virulent strain to evaluate the protection rates of vaccines against PEDV infection in China. Here, we report the complete genome sequence of strain CH/S, which may aid in understanding the molecular characteristics of this strain.     

鸡传染性支气管炎病毒两个地方分离株S1基因的扩增克隆与序列分析

对IBV肾型毒株JS/95 /0 3和呼吸型毒株SD/97/0 1的S1全基因进行了扩增、克隆和序列测定 ,将两毒株的S1基因序列与 10个参考毒株进行了比较。结果表明 ,JS/95 /0 3和SD/97/0 1分别与M41和H12 0株亲缘关系最近 ,它们可能是疫苗毒株的变异株。JS/95 /0 3和SD/97/0 1间的亲缘关系也较近 ,两者S1蛋白中只有 2 4个氨基酸的差异 ,其中有 15个位于前 130个氨基酸中 ,第 116位氨基酸可能与毒株的致病性有关。对两毒株S1蛋白的二级结构进行了预测和比较 ,结果发现 ,一个或极少数氨基酸的差异即可导致S1蛋白二级结构和抗原性的改变     

猪流行性腹泻病毒S蛋白主要抗原表位区的原核表达及间接ELISA检测方法的建立

【目的】建立一种快速、特异、敏感的检测血清中猪流行性腹泻病毒(PEDV)抗体的方法。【方法】利用生物学软件对PEDV S蛋白进行抗原位点分析,选择S蛋白的主要抗原表位区进行原核表达。采用SDS-PAGE和Western-blot对重组蛋白进行鉴定及抗原性分析。用纯化的重组蛋白作为包被抗原,经过条件优化、特异性和重复性试验,建立一种针对血清中PEDV抗体的间接ELISA检测方法。【结果】表达了重组S蛋白,重组的S蛋白能与PEDV阳性血清发生特异性反应,并建立一种基于重组S蛋白的间接ELISA检测方法。组内及组间变异系数均小于10%,重复性较好。建立的间接ELISA检测方法分别与商品化PEDV抗体检测试剂盒和Western-blot鉴定结果相比,两者符合率分别为86.67%和88.89%。【结论】建立的间接ELISA方法可以用于PEDV抗体的检测。