根癌农杆菌介导的日本曲霉转化体系的建立

【目的】通过根癌农杆菌介导的方法构建日本曲霉转化子库,从而筛选出高产甘没氧化酶的日本曲霉突变菌株。【方法】本文通过三亲杂交的方法将双元载体pBI-hphII转移至根癌农杆菌EHA105中并作为侵染菌株,以日本曲霉As5999为受体菌株,建立了农杆菌介导的日本曲霉转化体系,构建了突变体库,并对影响转化效率的根癌农杆菌浓度,乙酰丁香酮(As)加入与否,共培养时间,共培养温度等因素进行了分析。【结果】对转化子的PCR检测和Southern杂交分析表明,T-DNA已整合进日本曲霉基因组中,随机挑选的9个转化子连续转接10代后均能稳定遗传。【结论】该转化体系的建立为筛选出高产甘油氧化酶的日本曲霉突变菌株奠定了基础。     

聚苹果酸生产菌出芽短梗霉CCTCC M2012223的全基因组测序及序列分析

【目的】解析出芽短梗霉CCTCC M2012223的基因组序列信息,分析其代谢产物聚苹果酸、黑色素、普鲁兰多糖合成相关基因,为深入研究遗传多样性和代谢工程改造提供序列背景信息。【方法】使用Illumina Hi Seq高通量测序平台对出芽短梗霉CCTCC M2012223菌株进行全基因组测序,并对测序数据进行序列拼接,基因预测与功能注释,COG/GO聚类分析,比较基因组学分析等。下载其他5株出芽短梗霉基因组序列,比较分析6株菌的种内同源基因、全基因组进化以及代谢产物合成相关基因。【结果】出芽短梗霉CCTCC M2012223基因组序列全长30756831 bp,GC含量47.49%,编码9452个基因。比较基因组分析表明出芽短梗霉CCTCC M2012223的基因组组装长度最长,6株菌的同源基因数达到7092个,普鲁兰多糖和聚苹果酸合成相关基因的蛋白序列有很高的保守性。出芽短梗霉CCTCC M2012223和Aureobasidium pullulans var.melanogenum亲缘关系最近,而这2株菌的黑色素合成相关基因的蛋白序列有一些插入和突变。【结论】本研究解析了出芽短梗霉CCTCC M2012223的基因组序列信息,获得黑色素、普鲁兰多糖和聚苹果酸合成相关基因,为后续的代谢机制解析和改造提供相关依据。     

根癌农杆菌介导里氏木霉转化体系的建立和条件优化

目的:采用根癌农杆菌介导的转化方法实现丝状真菌里氏木霉的遗传转化,并优化转化条件.方法:构建含潮霉素抗性基因(hph)的双元载体pCAM-hph后,转化根癌农杆菌LBA4404获得转化菌株.将根癌农杆菌的转化菌株和里氏木霉的分生孢子共培养后在含100μg/mL潮霉素的抗性平板上筛选里氏木霉转化子,并采用PCR扩增和序列测定对转化子中的插入片段进行了分析.结果:使用根癌农杆菌介导的转化方法转化里氏木霉,每106个分生孢子可获得25.8个转化子.最佳的转化条件为:农杆菌初始浓度为OD660约为0.8,孢子数为106个,共培养时间为48h,pH为5.0～5.5,培养温度为28℃.结论:建立了根癌农杆菌介导的里氏木霉转化方法,并获得了最佳的转化条件.     

橡胶树胶孢炭疽菌T-DNA插入突变体库构建及其致病缺陷转化子筛选

【目的】进一步研究橡胶树胶孢炭疽菌致病分子机理。【方法】通过含ILV1基因(具氯嘧磺隆抗性)的pSULF.gfp双元载体农杆菌AGL-1介导进行橡胶树胶孢炭疽菌遗传转化,利用氯嘧磺隆抗性标记筛选转化子,对转化子PCR验证及荧光显微观察;采用离体古铜期橡胶树叶无伤接种法进行致病性缺陷转化子筛选,并对转化子进行遗传稳定性检测。【结果】获得含3 721个转化子的T-DNA插入突变体库,转化效率为150 400个转化子/106孢子,从3 721个转化子中筛选得到致病性缺陷转化子25个;随机选取20个转化子进行遗传稳定性测定,在不含氯嘧磺隆PDA平板上继代培养10次后仍保持氯嘧磺隆抗性,且表型稳定,表明插入外源基因能够稳定遗传。【结论】可以利用根癌农杆菌介导橡胶孢炭疽菌转化,构建橡胶树胶孢炭疽菌T-DNA插入突变体库,筛选致病缺陷突变菌,为进一步研究该菌致病相关基因提供材料。     

农杆菌介导的紫色红曲霉遗传转化体系的建立和优化

通过优化各种转化因素,建立了根癌农杆菌(Agrobacterium tumefaciens)介导红曲霉(Monascus)的高效转化体系:红曲霉在PDA培养基培养21 d后收集孢子,制备红曲霉孢子悬浮液,浓度为106个/mL,根癌农杆菌浓度为OD600值0.5,诱导剂AS浓度为100μmol/L,农杆菌与红曲霉在25℃共培养3 d。采用此转化体系构建了含有530多个转化子的红曲霉T-DNA插入突变体库。随机选取50株转化子菌株进行分子验证和稳定性检测,证明T-DNA成功插入红曲霉基因组DNA中,并能稳定遗传。最后,通过形态观察筛选出8株变异较大的菌株,为以后的红曲霉基因功能研究奠定了一定的基础。     

农杆菌介导的斑玉蕈遗传转化

【目的】将农杆菌介导的转化应用于重要的工厂化栽培食用菌斑玉蕈中,建立稳定的农杆菌介导的斑玉蕈遗传转化技术。【方法】将构建的双元载体pYN6982转入农杆菌LBA4404菌株中,以斑玉蕈SIEF3133菌株打碎的双核菌丝为受体材料,利用根癌农杆菌介导的转化方法进行斑玉蕈转化试验。【结果】经潮霉素抗性筛选、PCR鉴定以及有丝分裂稳定性试验验证,表明潮霉素磷酸转移酶基因(hph)已经整合到斑玉蕈的基因组中;转基因斑玉蕈菌丝在荧光显微镜下可以观测到绿色荧光,表明增强型绿色荧光蛋白基因(egfp)已经在转基因斑玉蕈菌株中获得了表达;通过PCR检测,随机挑选的8个转基因斑玉蕈菌株中有2个可以扩增出载体转移DNA(T-DNA)边界重复序列外的卡那霉素基因(kan)序列。【结论】获得了稳定遗传和表达的斑玉蕈转基因菌株,建立了农杆菌介导的斑玉蕈遗传转化方法。农杆菌介导的斑玉蕈遗传转化中,存在载体T-DNA边界重复序列之外的DNA序列转移到转基因斑玉蕈中的现象,有待进一步研究。     

农杆菌介导转基因植物T-DNA的整合方式

农杆菌介导的遗传转化已被广泛应用于植物转基因研究。作为外源基因的载体,农杆菌T-DNA片段在植物基因组中的整合方式,不仅影响外源基因的整合效率及稳定性,还会影响外源基因的表达特性。文章就农杆菌介导的T-DNA整合的两种主要模式、规律及相关研究手段进行综述,为农杆菌介导的转基因及T-DNA插入突变等相关研究提供借鉴。     

菰黑粉菌T-DNA突变体库的构建及分析

通过建立适用于菰黑粉菌Ustilago esculenta的农杆菌介导遗传转化(Agrobacterium tumefaciens-mediated transformation,ATMT)体系,构建菰黑粉菌T-DNA插入突变体库。针对性地筛选双核菌丝形成缺陷型转化子,并对T-DNA插入位点进行分析,为研究菰黑粉菌二态型转换的分子调控机理打下基础。以构建的菰黑粉菌自融合菌株TSP为出发菌株,以含有遗传霉素(G418)抗性基因(neo)的质粒为载体,通过ATMT构建菰黑粉菌T-DNA突变体库,并对诱导剂乙酰丁香酮(AS)浓度、转化的共培养时间、农杆菌浓度和菰黑粉菌芽孢子浓度等建库影响因素进行单因素条件试验,筛选最优条件;对继代培养的转化子基因组中的遗传霉素抗性基因进行PCR检测,验证转化子遗传稳定性;对突变体库中的转化子双核菌丝生长情况进行观察,测定其双核菌丝形成能力;对上述双核菌丝形成缺陷型转化子进行基因组重测序,分析其T-DNA插入位点。当遗传霉素浓度为75 μg/mL时,菰黑粉菌的生长被完全抑制。当AS浓度为100 μg/mL、共培养时间为24 h、孢子浓度为1×10⁵个/mL、农杆菌浓度为OD₆₀₀=0.3时,转化获得转化子的效率最高,为菰黑粉菌ATMT最优转化体系。在突变体库中随机选取7株转化子在YEPS固体平板上继代培养10代,仍然能够通过PCR的方法在基因组中检测到neo基因片段,说明T-DNA成功插入TSP菌株基因组且稳定遗传。针对部分转化子进行双核菌丝生长能力测定,有5株转化子的菌落边缘没有形成菌丝,而TSP菌株的边缘长出了明显的菌丝,说明这5株转化子双核菌丝形成的能力丧失。对上述双核菌丝形成缺陷型转化子中的其中2个(TSP-1、TSP-23)进行基因组重测序,比对结果显示,TSP-1插入位点位于其交配型基因a位点的(GenBank: MK097140.1) mfa2.1基因的外显子区域,TSP-23插入位点位于两个假定蛋白之间。本研究优化了菰黑粉菌ATMT遗传转化体系,构建了菰黑粉菌T-DNA插入突变体库;筛选到双核菌丝生长缺陷型突变体,并通过基因组重测序的手段明确了相关突变体的T-DNA插入位点,为后续菰黑粉菌二型态转换的调控机理研究奠定了一定的基础。     

根癌农杆菌介导的黑曲霉遗传转化体系的建立及优化

基于根癌农杆菌介导的遗传转化方法的独特优点,研究黑曲霉转化过程中各主要影响因素,建立高效的黑曲霉遗传转化方法。构建双元载体pBI-hph,通过电转导入农杆菌LBA4404中,以黑曲霉TCCC41056为受体菌株,利用潮霉素B基因作为筛选标记,对影响转化效率的孢子悬液的新鲜程度及浓度、农杆菌菌液浓度、共培养时间、共培养温度这五个条件进行分析,建立根癌农杆菌介导的黑曲霉遗传转化体系。实验结果表明,上述条件对黑曲霉的转化效率有较大的影响,通过优化,黑曲霉转化效率可达83个转化子/10⁷分生孢子;整合到黑曲霉基因组的外源基因可以稳定遗传,在转接10代后遗传性能仍保持稳定,并在众多转化子中筛选得到了糖化酶活力提高18%的黑曲霉突变株。根癌农杆菌介导的黑曲霉转化体系的建立,为进一步研究黑曲霉的功能基因以及开发黑曲霉表达系统提供了有力的手段。     

T-DNA整合的研究进展

根癌农杆菌介导的基因转化过程中,T-DNA的整合是关系到外源基因能否稳定遗传的关键步骤。影响T-DNA整合的因素很多,包括毒性蛋白、寄主因子等等,本文对此加以综述,同时阐述了T-DNA在植物基因组中的整合及染色体水平上的分布及其整合模型。     

An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics

The GABI-Kat population of T-DNA mutagenized Arabidopsis thaliana lines with sequence-characterized insertion sites is used extensively for efficient progress in plant functional genomics. Here we provide details about the establishment of the material, demonstrate the population's functionality and discuss results from quality control studies. T-DNA insertion mutants of the accession Columbia (Col-0) were created by Agrobacterium tumefaciens-mediated transformation. To allow selection of transformed plants under greenhouse conditions, a sulfadiazine resistance marker was employed. DNA from leaves of T1 plants was extracted and used as a template for PCR-based amplification of DNA fragments spanning insertion site borders. After sequencing, the data were placed in a flanking sequence tag (FST) database describing which mutant allele was present in which line. Analysis of the distribution of T-DNA insertions revealed a clear bias towards intergenic regions. Insertion sites appeared more frequent in regions in front of the ATG and after STOP codons of predicted genes. Segregation analysis for sulfadiazine resistance showed that 62% of the transformants contain an insertion at only one genetic locus. In quality control studies with gene-specific primers in combination with T-DNA primers, 76% of insertions could be confirmed. Finally, the functionality of the GABI-Kat population was demonstrated by exemplary confirmation of several new transparent testa alleles, as well as a number of other mutants, which were identified on the basis of the FST data.     

Transformation of Coniothyrium minitans, a parasite of Sclerotinia sclerotiorum, with Agrobacterium tumefaciens

Coniothyrium minitans is a potential biological control agent of the plant pathogenic fungus Sclerotinia sclerotiorum. In this research, T-DNA insertional transformation of strain ZS-1 of C. minitans mediated by Agrobacterium tumefaciens was obtained, with optimization of spore maturity for transformation. After confirmation by PCR, transformants were subjected to Southern blot analysis, and results showed that more than 82.7% of transformants had single T-DNA insertions, and 12.1% of transformants had two copies T-DNA insertions. The genomic DNA segments of transformants flanking the T-DNA could be amplified from both borders with TAIL-PCR. Four types of mutants were screened and identified from the T-DNA insertional library, which comprised sporulation deficient mutants, pathogenicity deficient mutants, pigment change mutants and antibiotic deficient mutant, and some of the mutants were described; the number and frequency of each type of mutant from the library were calculated, and the frequency of each type is 3.27 x 10(-3), 1.0 x 10(-4), 1.4 x 10(-4), 2.5 x 10(-4), respectively. The successful creation of the T-DNA insertional transformation library may help us to unravel the interaction between a parasite and its host at a molecular level, to clarify the differentiation and development of this fungus, and to analyze and clone functional genes from the biocontrol microorganism in tripartite associations.     

农杆菌介导转化黑曲霉分生孢子及产孢缺陷突变子T-DNA插入位点分析

【目的】利用农杆菌(Agrobacterium tumefaciens)T-DNA系统,建立转化黑曲霉(Aspergillus niger)分生孢子的方法,构建T-DNA插入突变子文库,为黑曲霉基因组功能注释研究打下基础。【方法】采用携带二元质粒载体pCAMBIA1301的农杆菌EHA105,诱导转化黑曲霉分生孢子,筛选具有潮霉素抗性的突变子。分析抗性稳定突变子菌株的表型,采用反向PCR方法分析T-DNA插入位点相邻位置的序列,并推测突变基因可能具有的功能。【结果】实验获得具有稳定潮霉素抗性转化子193株,转化率为5.6×102转化子/108分生孢子。部分转化子表型出现较为明显改变,其中一株不能产孢,对其T-DNA插入位点序列分析比对结果显示,突变基因属于超级转运家族(major facilitator superfamily,MFS)。【结论】本研究建立的农杆菌转化黑曲霉分生孢子平台,结合T-DNA插入突变位点分析,可以为黑曲霉基因组功能注释研究提供一种简便有效的途径。     

The maternal chromosome set is the target of the T-DNA in the in planta transformation of Arabidopsis thaliana

In planta transformation methods are now commonly used to transform Arabidopsis thaliana by Agrobacterium tumefaciens. The origin of transformants obtained by these methods has been studied by inoculating different floral stages and examining gametophytic expression of an introduced beta-glucuronidase marker gene encoding GUS. We observed that transformation can still occur after treating flowers where embryo sacs have reached the stage of the third division. No GUS expression was observed in embryo sacs or pollen of plants infiltrated with an Agrobacterium strain bearing a GUS gene under the control of a gametophyte-specific promoter. To identify the genetic target we used an insertion mutant in which a gene essential for male gametophytic development has been disrupted by a T-DNA bearing a Basta resistance gene (B(R)). In this mutant the B(R) marker is transferred to the progeny only by the female gametes. This mutant was retransformed with a hygromycin resistance marker and doubly resistant plants were selected. The study of 193 progeny of these transformants revealed 25 plants in which the two resistance markers were linked in coupling and only one plant where they were linked in repulsion. These results point to the chromosome set of the female gametophyte as the main target for the T-DNA.     

A newly constructed Agrobacterium-mediated transformation system revealed the influence of nitrogen sources on the function of the LaeA regulator in Penicillium chrysogenum

Penicillium chrysogenum is not only an industrially important filamentous fungus for penicillin production, but it also represents as a promising cell factory for production of natural products. Development of efficient transformation systems with suitable selection markers is essential for genetic manipulations in P. chrysogenum. In this study, we have constructed a new and efficient Agrobacterium tumefaciens-mediated transformation (ATMT) system with two different selection markers conferring the resistance to nourseothricin and phleomycin for P. chrysogenum. Under the optimized conditions for co-cultivation at 22 °C for 60 h with acetosyringone concentration of 200 μM, the transformation efficiency of the ATMT system could reach 5009 ± 96 transformants per 10⁶ spores. The obtained transformants could be exploited as the T-DNA insertion mutants for screening genes involved in morphogenesis and secondary metabolism. Especially, the constructed ATMT system was applied successfully to generate a knockout mutant of the laeA regulatory gene and relevant complementation strains in a wild strain of P. chrysogenum. Our results indicated that the LaeA regulator controls growth, sporulation, osmotic stress response and antibiotic production in P. chrysogenum, but its function is reliant on nitrogen sources. Furthermore, we showed that the laeA orthologous genes from the citrus postharvest pathogen P. digitatum and from the industrial fungus Aspergillus niger could recover the phenotypic defects in the P. chrysogenum laeA deletion mutant. Conclusively, this work provides a new ATMT system, which can be employed for T-DNA insertional mutagenesis, heterologous gene expression or for molecular inspections of potential genes related to secondary metabolism in P. chrysogenum.     

Rapid and accurate early-stage detection of T-DNA/plant flanking sequences of resistant kumquats

Agrobacterium-mediated genetic transformation is a widely applied tool in plant biotechnology. In this process, genes of interest are integrated into plant genomes via T-DNAs present on plasmids in Agrobacteria. Classical and standard methods for screening transformants, such as Southern blot, are inconvenient for most woodland plants because of extremely low transformation efficiency. For the purpose of identifying transgenic woody lines at early selection stages, a right-border T-DNA/plant conjunction sequence analysis was carried out. By analyzing these sequences, 15 out of 17 kanamycin-resistant kumquats were found to be integrated with foreign genes, and two or more copies were present in 33.3% of the transgenic lines, which is completely concordant with Southern blots. Moreover, T-DNA integration into plant nuclear DNA was random without any sequence hotspots, and cleavage sites are any base of the sequence ‘TGAC’. These results showed that this screening method could not only detect resistant woodland plants rapidly at the early selection stage, but unequivocally detect copy numbers. Compared with other screening technique, this method could save time and effort for conducting genetic transformation in woody plants, and also provides accurate integration information for transgenic plants.     

Transgenic Pinus radiata from Agrobacterium tumefaciens–mediated transformation of cotyledons

A method for Agrobacterium tumefaciens-mediated transformation of Pinus radiata cotyledon explants was developed using commercially available open-pollinated seed. Pinus radiata is the most widely planted commercial conifer species in the Southern Hemisphere. Reports on transformation of this species have relied on particle bombardment of embryogenic callus derived from immature embryos. The main drawback to the method is the small number of genotypes that are amenable to transformation and regeneration. Since more than 80% of genotypes of radiata pine can be regenerated using cotyledons from mature seed, cotyledon explants were cocultivated with A. tumefaciens strain AGL1 containing a plasmid coding for the neomycin phosphotransferase II (nptII) gene and the -glucuronidase (GUS) gene (uidA). Transformed shoots were selected using either geneticin or kanamycin. Critical factors for successful transformation were survival of the cotyledons after cocultivation and selection parameters. Of the 105 putative transformants that were recovered from selection media, 70% were positive for integration of the nptII gene when analysed by PCR. GUS histochemical assay for uidA expression was unreliable because of reaction inhibition by unidentified compounds in the pine needles. Further, only 4 of the 26 independent transformants characterised by PCR and Southern analysis contained an intact copy of both genes. The remaining 22 transformants appeared to have a truncated or rearranged copy of the T-DNA. It is possible that the truncation/rearrangements are due to the Cauliflower mosaic virus (CaMV) 35S promoter. Analysis of the T-DNA junction sites and sequencing of the introduced DNA will help elucidate the nature of T-DNA insertion so that genetic modification of radiata pine can be targeted effectively.Communicated by P. Debergh     

Genetic basis of carotenoid overproduction in Fusarium oxysporum

The phytopathogenic fungus Fusarium oxysporum is a model organism in the study of plant-fungus interactions. As other Fusarium species, illuminated cultures of F. oxysporum exhibit an orange pigmentation because of the synthesis of carotenoids, and its genome contains orthologous light-regulated car genes for this biosynthetic pathway. By chemical mutagenesis, we obtained carotenoid overproducing mutants of F. oxysporum, called carS, with upregulated mRNA levels of the car genes. To identify the regulatory gene responsible for this phenotype, a collection of T-DNA insertional mutants obtained by Agrobacterium mediated transformation was screened for carotenoid overproduction. Three candidate transformants exhibited a carS-like phenotype, and two of them contained T-DNA insertions in the same genomic region. The insertions did not affect the integrity of any annotated ORFs, but were linked to a gene coding for a putative RING-finger (RF) protein. Based on its similarity to the RF protein CrgA from the zygomycete Mucor circinelloides, whose mutation results in a similar carotenoid deregulation, this gene (FOXG_09307) was investigated in detail. Its expression was not affected in the transformants, but mutant alleles were found in several carS mutants. A strain carrying a partial FOXG_09307 deletion, fortuitously generated in a targeted transformation experiment, exhibited the carS phenotype. This mutant and a T-DNA insertional mutant holding a 5-bp insertion in FOXG_09307 were complemented with the wild type FOXG_09307 allele. We conclude that this gene is carS, encoding a RF protein involved in down-regulation of F. oxysporum carotenogenesis.