外源无机氮素形态对土壤氨基糖动态的影响

微生物生长对底物的可利用性存在不同的响应,外源氮素的形态可以显著影响微生物代谢过程,而土壤氨基糖作为微生物细胞壁残留物,其形成、分解和周转特征与外源碳氮供给密切相关,对土壤氨基糖的研究与同位素标记技术相结合,可以进一步反映微生物对底物的利用特征.本文以葡萄糖及15N标记的NH4+和NO3-为底物,利用气相色谱-质谱联机技术,通过测定氨基糖中同位素富集比例,跟踪新形成(标记)和原有(非标记)的土壤氨基糖的动态变化.结果表明:在培养过程中,15N标记的氨基糖含量显著增加,NH4+向氨基糖的转化显著高于NO3-,反映出微生物对NH4+的选择性利用.土壤中原有的氨基糖也发生了不同变化.其中,非标记氨基葡萄糖在N H4+为底物时,其含量有所增加,但在NO3-为底物时含量逐渐下降;非标记胞壁酸含量在2个处理中均不断下降,尤其以NO3-为底物时更为显著;非标记氨基半乳糖含量的增减幅度均小于20％.这种特异性变化表明,不同来源的微生物细胞壁残留物对土壤氮素周转和稳定的作用不同,真菌细胞壁残留物易于在土壤中积累,有利于土壤有机质的稳定,而细菌细胞壁残留物容易分解,在土壤有机质周转过程中起重要作用.     

干湿交替条件下土壤氨基糖含量的动态变化

通过室内模拟培养试验,研究了恒湿和干湿交替条件下土壤中3种微生物来源氨基糖含量的动态变化,并且利用氨基葡萄糖和胞壁酸的比值分析了干湿交替条件下土壤真菌和细菌对土壤有机质转化的相对贡献.结果表明:恒湿条件下,细菌来源的胞壁酸在土壤中的分解速率大于真菌来源的氨基葡萄糖,氨基半乳糖在土壤中的分解速率较慢;干湿交替改变了土壤中3种氨基糖的分解特征,与恒湿处理相比,干湿交替培养前期以胞壁酸为代表的细菌残余物的分解速率高于以氨基葡萄糖为代表的真菌残余物,随着干湿交替频率的增大,以氨基葡萄糖为代表的真菌残余物分解速率高于以胞壁酸为代表的细菌残余物.可见,干湿交替条件改变了以氨基糖为代表的土壤氮素的微生物转化过程.     

颗粒有机质的来源、测定及其影响因素

土壤活性有机质及其组分作为土壤质量的重要指标在土壤化学、物理和生物性质方面起着重要作用。颗粒有机质能够有效地反映有机质的特性,与微生物生长、营养供给及C、N的生物学调节密切相关。作为活性有机质的一个量度指标,颗粒有机质越来越受到人们的重视。本文综述了土壤颗粒有机质的来源及其在土壤有机质转化过程中的作用,对其测定方法作了系统的描述,阐明了土壤理化性质、农业措施(施肥与耕作)及土地利用类型对土壤颗粒有机质在土壤形成及维持其稳定性方面的影响。     

三江平原湿地开垦对土壤氨基糖积累特征的影响

微生物残体在土壤有机质的形成和稳定过程中发挥着重要作用,但湿地开垦对土壤微生物残体积累特征的影响尚不清楚。本研究以三江平原小叶章湿地为对象,采集原始自然湿地和开垦改种豆科作物后不同耕作年限(5年、10年和25年)的土壤,以氨基糖为微生物残体的标识物,探讨湿地开垦对土壤微生物残体积累特征的影响。结果表明: 自然湿地开垦为农田后显著降低了土壤中氨基糖的含量,且随着开垦年限的增加,氨基糖的损失比例也增加。与自然湿地相比,开垦25年后土壤中的氨基葡萄糖、氨基半乳糖和胞壁酸含量分别下降38.0%、38.1%和35.9%,且在开垦最初5年中细菌来源的胞壁酸下降速率(25.8%)远高于真菌来源的氨基葡萄糖(14.9%),说明短期内湿地开垦对细菌的影响较真菌更加迅速。湿地开垦为农田5、15和25年后,土壤氨基糖总量分别下降21.1%、34.0%和38.0%;同时,氨基糖总量占土壤有机质的比例也受到湿地开垦的显著影响,由自然湿地中的4.8%降至开垦25年后的4.4%。这说明长期湿地开垦加速了土壤有机质中微生物来源有机组分的分解转化,进而改变土壤有机质的组成。这些变化将影响湿地生态系统中土壤有机质的长期稳定和功能演变。     

外源氮素添加对森林土壤氨基糖转化的影响

采用室内模拟培养法研究了不同数量氮素添加条件下森林土壤中3种微生物来源的氨基糖含量的动态变化,并且利用氨基葡萄糖和胞壁酸的比值分析了氮素添加条件下土壤真菌和细菌对土壤氮素转化和积累的相对贡献。结果表明:土壤中氨基糖含量的动态变化与土壤中的养分状况密切相关;当向土壤中添加氮源时,微生物会利用外加氮源合成自身的细胞壁物质,并且高氮处理胞壁酸含量高于低氮处理,而高氮处理氨基葡萄糖含量则低于低氮处理,说明随施氮量的增加更有利于以胞壁酸为代表的细菌残留物在土壤中的积累,不利于以氨基葡萄糖为代表的真菌残留物的积累,氨基半乳糖对氮素添加的响应较小;当土壤中养分缺乏时,氨基糖能够发生不同程度的分解;添加氮源条件下,真菌和细菌来源氨基糖的比值发生变化,细菌对土壤氮素转化的贡献大于真菌,并且高氮处理细菌的贡献更大。本研究表明,氮素添加改变了以氨基糖为代表的土壤氮素的微生物转化过程。     

碳同位素示踪技术及其在陆地生态系统碳循环研究中的应用与展望

碳同位素示踪技术具有高度的专一性和灵敏度, 经过几十年的发展, 形成了一系列成熟的标记方法, 在陆地生态系统碳循环过程的研究中已得到广泛应用。目前, 自然丰度法、与¹³C贫化示踪技术结合的自由空气中气体浓度增加(FACE)实验、脉冲与连续标记法以及碳同位素高丰度底物富集标记法是研究陆地生态系统碳循环过程常用的碳同位素示踪方法; 通过将长期定位实验和室内模拟实验结合, 量化光合碳在植物-土壤系统的传输与分配特征, 明确植物光合碳对土壤有机质的来源、稳定化过程的影响及其微生物驱动机制; 阐明土壤碳动态变化(迁移与转化)和新碳与老碳对土壤碳库储量的相对贡献, 评估有机碳输入、转化与稳定的生物与非生物微观界面过程机制。然而, 生态系统碳循环受气候、植被、人为活动等多因素影响, 碳同位素技术需要结合质谱、光谱技术实现原位示踪, 结合分子生物学技术阐明其微生物驱动机制, 从而构建灵敏、准确、多尺度、多方位的同位素示踪技术体系。因此, 该文以稳定碳同位素为主, 综述了碳同位素示踪技术的原理、分析方法和在陆地生态系统碳循环过程中的应用进展, 归纳总结了碳同位素示踪技术结合原位检测技术和分子生物学技术的研究进展和应用前景, 并对碳同位素示踪技术存在的问题进行了分析和展望。     

海洋颗粒物/沉积物中的氨基酸及其对有机质降解的指示作用

氨基酸是海洋有机质尤其是有机氮的重要组分,其地球化学行为活跃,在海洋有机质生物地球化学循环过程中起着重要作用.氨基酸的含量、组成和分布等信息可有效指示有机质的降解状态.本研究系统总结了海洋颗粒物/沉积物中氨基酸的分布特征及影响因素,以及氨基酸对有机质降解程度的指示作用.海洋颗粒物/沉积物氨基酸的主要成分为甘氨酸(Gly)、谷氨酸(Glu)、丙氨酸(Ala)和天冬氨酸(Asp),其含量从近岸到大洋逐渐降低,并随深度增加呈下降趋势组.氨基酸的碳、氮归一化产率()越低,表明有机质%AA-C/TOC,%AA-N/TN)以及基于氨基酸成的降解因子(DI的降解程度越高.基于非蛋白质氨基酸以及)D型氨基酸含量与组成的活性因子(RI)和D型氨基酸与L型氨基酸比值(D/L等指标可以根据细菌对氨基酸的转化作用来指示有机质的降解程度,其中RI值越接近于0,D/L值越高,蛋白质与非蛋白质氨基酸的比值的高Asp/β-Ala和Glu/γ-Aba(氨基丁酸)越小,均表明有机质受到微生物降解和转化程度越.颗粒物/沉积物中氨基酸的迁移转化过程主要受到溶解氧、营养盐水平、有机质来源、沉积环境以及微生物转化等因素的影响.今后应加强颗粒物和沉积物之间的协同效应以及微生物对氨基酸的影响与具体调控机理研究.     

基于碳、氮稳定同位素技术的东太湖水生食物网结构

稳定同位素技术是研究生态系统食物网中物质循环与能量流动的有效技术之一。碳稳定同位素比值(δ13C)常用来分析消费者食物来源,而氮稳定同位素比值(δ15N)常用来确定生物在食物网中的营养位置。本研究应用碳、氮稳定同位素技术构建了东太湖食物网结构。结果表明:东太湖食物网主要由两条营养传递途径组成,即浮游植物为初级生产者的浮游营养传递途径和苦草等大型水生植物为初级生产者的近岸底层营养传递途径,湖中9种主要鱼虾类能量主要来自近岸底层传递;翘嘴鲌(Erythroculter ilishaeformis)、鳜(Siniperca chuatsi)和鲶(Silurus sp.)作为湖泊中的顶极捕食者,具有相对最高的营养级,并占据食物网的顶层。     

14C示踪技术在土壤有机质周转研究中的应用

采用碳同位素标记有机材料能够较真实地反映其在土壤中的分解和转化过程,是研究土壤有机质周转动力学的必要方法。本文介绍了^14C示踪技术在土壤腐殖质的形成与分解过程、有机底物在土壤中的分解和转化及其对原有土壤有机质分解的影响、土壤微生物生物量碳及其周转以及温室气体排放等方面研究中的应用进展。     

碳同位素示踪技术及其在陆地生态系统碳循环研究中的应用与展望

碳同位素示踪技术具有高度的专一性和灵敏度,经过几十年的发展,形成了一系列成熟的标记方法,在陆地生态系统碳循环过程的研究中已得到广泛应用。目前,自然丰度法、与13C贫化示踪技术结合的自由空气中气体浓度增加(FACE)实验、脉冲与连续标记法以及碳同位素高丰度底物富集标记法是研究陆地生态系统碳循环过程常用的碳同位素示踪方法;通过将长期定位实验和室内模拟实验结合,量化光合碳在植物-土壤系统的传输与分配特征,明确植物光合碳对土壤有机质的来源、稳定化过程的影响及其微生物驱动机制;阐明土壤碳动态变化(迁移与转化)和新碳与老碳对土壤碳库储量的相对贡献,评估有机碳输入、转化与稳定的生物与非生物微观界面过程机制。然而,生态系统碳循环受气候、植被、人为活动等多因素影响,碳同位素技术需要结合质谱、光谱技术实现原位示踪,结合分子生物学技术阐明其微生物驱动机制,从而构建灵敏、准确、多尺度、多方位的同位素示踪技术体系。因此,该文以稳定碳同位素为主,综述了碳同位素示踪技术的原理、分析方法和在陆地生态系统碳循环过程中的应用进展,归纳总结了碳同位素示踪技术结合原位检测技术和分子生物学技术的研究进展和应用前景,并对碳同位素示踪技术存在的问题进行了分析和展望。     

不同施肥处理下水稻根际和非根际土壤中氨基糖积累特征

以水稻长期定位施肥试验土壤为研究对象,选取不施肥(CK)、化肥(NPK)、秸秆还田+化肥(NPKS)、30%有机肥+70%化肥(LOM)和60%有机肥+40%化肥(HOM)5种处理,分析水稻分蘖旺期根际土和非根际土中氨基糖积累特征.结果表明: 与CK和NPK处理相比,长期施用有机物料(NPKS、LOM、HOM)显著增加了水稻根际土和非根际土中有机碳、总氨基糖及其氨基单糖(胞壁酸、氨基葡萄糖和氨基半乳糖)含量.不同施肥处理下3种氨基单糖的积累规律不同,说明不同微生物对施肥处理的响应趋势和强度有所不同.受稻田翻耕等均匀化土壤的农事操作影响,各处理总氨基糖含量在根际土与非根际土间无显著差异.氨基糖碳对土壤有机碳积累的贡献范围为24.0～28.3 mg·g^-1,且以NPKS处理最高,HOM和CK处理最低.真菌氨基葡萄糖/胞壁酸比值范围为24.4～36.6,说明该试验点所有处理的根际土与非根际土中有机质的降解与转化过程以真菌为主导,且与NPK和CK相比,NPKS处理的真菌参与度提高,而施用HOM处理的细菌参与度提高.     

生物标志物及其在生态系统研究中的应用

生物标志物是环境和地质体中记载着原始生物母质分子结构信息的有机化合物, 其含量可以指征特定生物来源对天然有机质的相对贡献, 其组成和同位素信息还可以记录有机质的转化及环境信息。与传统元素及组分分析相比, 生物标志物为研究天然有机质的来源、动态变化和转化特征提供了具有高度专一性和灵敏度的工具, 因此, 近年来被广泛地应用于生态学和生物地球化学研究中。特别是, 与生态系统观测以及控制实验相结合, 生物标志物在揭示微生物的活性与碳源变化、土壤有机碳的稳定机制及其对全球变化的响应等方面显示了广阔的应用前景。近些年开发的生物标志物单体同位素分析也在生态系统碳氮周转与食物网研究等方面显示了巨大的研究潜力。基于此, 该文综述了生态系统研究中常用的生物标志物的种类、分析方法和应用方向, 总结了生物标志物研究目前存在的问题, 并对未来的研究方向进行了展望, 旨在为使用生物标志物的生态学和环境科学研究者提供参考。     

Microbial transformation of distinct exogenous substrates into analogous composition of recalcitrant dissolved organic matter

Oceanic dissolved organic matter (DOM) comprises a complex molecular mixture which is typically refractory and homogenous in the deep layers of the ocean. Though the refractory nature of deep-sea DOM is increasingly attributed to microbial metabolism, it remains unexplored whether ubiquitous microbial metabolism of distinct carbon substrates could lead to similar molecular composition of refractory DOM. Here, we conducted microbial incubation experiments using four typically bioavailable substrates (L-alanine, trehalose, sediment DOM extract, and diatom lysate) to investigate how exogenous substrates are transformed by a natural microbial assemblage. The results showed that although each-substrate-amendment induced different changes in the initial microbial assemblage and the amended substrates were almost depleted after 90 days of dark incubation, the bacterial community compositions became similar in all incubations on day 90. Correspondingly, revealed by ultra-high resolution mass spectrometry, molecular composition of DOM in all incubations became compositionally consistent with recalcitrant DOM and similar toward that of DOM from the deep-sea. These results indicate that while the composition of natural microbial communities can shift with substrate exposures, long-term microbial transformation of distinct substrates can ultimately lead to a similar refractory DOM composition. These findings provide an explanation for the homogeneous and refractory features of deep-sea DOM.     

The dynamics of neutral sugars in the rhizosphere of wheat. An approach by13C pulse-labelling and GC/C/IRMS

Rhizodeposition, i.e. the release of carbon into the soil by growing roots, is an important part of the terrestrial carbon cycle. However thein situ nature and dynamics of root-derived carbon in the soil are still poorly understood. Here we made an investigation of the latter in laboratory experiments using¹³CO₂ pulse chase labelling of wheat (Triticum aestivum L.). We analyzed the kinetics of¹³C-labelled carbon and more specially¹³C carbohydrates in the rhizosphere. Wheat seedlings-soil mesocosms were exposed to¹³CO₂ for 5 hours in controlled chambers and sampled repeatedly during two weeks for¹³C/C analysis of organic carbon. After a two-step separation of the soil from the roots, the amount of total organic¹³C was determined by isotope ratio mass spectrometry as well as the amounts of¹³C in arabinose, fructose, fucose, glucose, galactose, mannose, rhamnose and xylose. The amount and isotopic ratio of monosaccharides were obtained by capillary gas chromatography coupled with isotope ratio mass spectrometry (GC/C/IRMS) after trimethyl-silyl derivatization. Two fractions were analyzed : total (hydrolysable) and soluble monomeric (water extractable) soil sugars. The amount of organic¹³C found in the soil, expressed as a percentage of the total photosynthetically fixed¹³C at the end of the labelling period, reached 16% in the day following labelling and stabilised at 9% after one week. We concluded that glucose under the form of polymers was the dominant moietie of rhizodeposits. Soluble glucose and fructose were also present. But after 2 days, these soluble sugars had disappeared. Forty percent of the root-derived carbon was in the form of neutral sugars, and exhibited a time-increasing signature of microbial sugars. The composition of rhizospheric sugars rapidly tended towards that of bulk soil organic matter.     

Microbiology of flooded rice paddies

Flooded rice paddies are one of the major biogenic sources of atmospheric methane. Apart from this contribution to the 'greenhouse' effect, rice paddy soil represents a suitable model system to study fundamental aspects of microbial ecology, such as diversity, structure, and dynamics of microbial communities as well as structure-function relationships between microbial groups. Flooded rice paddy soil can be considered as a system with three compartments (oxic surface soil, anoxic bulk soil, and rhizosphere) characterized by different physio-chemical conditions. After flooding, oxygen is rapidly depleted in the bulk soil. Anaerobic microorganisms, such as fermentative bacteria and methanogenic archaea, predominate within the microbial community, and thus methane is the final product of anaerobic degradation of organic matter. In the surface soil and the rhizosphere well-defined microscale chemical gradients can be measured. The oxygen profile seems to govern gradients of other electron acceptors (e.g., nitrate, iron(III), and sulfate) and reduced compounds (e.g., ammonium, iron(II), and sulfide). These gradients provide information about the activity and spatial distribution of functional groups of microorganisms. This review presents the current knowledge about the highly complex microbiology of flooded rice paddies. In Section 2 we describe the predominant microbial groups and their function with particular regard to bacterial populations utilizing polysaccharides and simple sugars, and to the methanogenic archaea. Section 3 describes the spatial and temporal development of microscale chemical gradients measured in experimentally defined model systems, including gradients of oxygen and dissolved and solid-phase iron(III) and iron(II). In Section 4, the results of measurements of microscale gradients of oxygen, pH, nitrate-nitrite, and methane in natural rice fields and natural rice soil cores taken to the laboratory will be presented. Finally, perspectives of future research are discussed (Section 5).     

Pathways of mineral‐associated soil organic matter formation: Integrating the role of plant carbon source,chemistry, and point of entry

To predict the behavior of the terrestrial carbon cycle, it is critical to understand the source, formation pathway, and chemical composition of soil organic matter (SOM). There is emerging consensus that slow‐cycling SOM generally consists of relatively low molecular weight organic carbon substrates that enter the mineral soil as dissolved organic matter and associate with mineral surfaces (referred to as “mineral‐associated OM,” or MAOM). However, much debate and contradictory evidence persist around: (a) whether the organic C substrates within the MAOM pool primarily originate from aboveground vs. belowground plant sources and (b) whether C substrates directly sorb to mineral surfaces or undergo microbial transformation prior to their incorporation into MAOM. Here, we attempt to reconcile disparate views on the formation of MAOM by proposing a spatially explicit set of processes that link plant C source with MAOM formation pathway. Specifically, because belowground vs. aboveground sources of plant C enter spatially distinct regions of the mineral soil, we propose that fine‐scale differences in microbial abundance should determine the probability of substrate–microbe vs. substrate–mineral interaction. Thus, formation of MAOM in areas of high microbial density (e.g., the rhizosphere and other microbial hotspots) should primarily occur through an in vivo microbial turnover pathway and favor C substrates that are first biosynthesized with high microbial carbon‐use efficiency prior to incorporation in the MAOM pool. In contrast, in areas of low microbial density (e.g., certain regions of the bulk soil), MAOM formation should primarily occur through the direct sorption of intact or partially oxidized plant compounds to uncolonized mineral surfaces, minimizing the importance of carbon‐use efficiency, and favoring C substrates with strong “sorptive affinity.” Through this framework, we thus describe how the primacy of biotic vs. abiotic controls on MAOM dynamics is not mutually exclusive, but rather spatially dictated. Such an understanding may be integral to more accurately modeling soil organic matter dynamics across different spatial scales.     

可发酵糖为底物不同菌种丁醇生产能力的研究

随着新一代生物质能源的研发,利用梭菌的发酵生产丁醇已成为热点。选用能生产丁醇的Clostridium acetobutylicum AS1.7,Clostridium acetobutylicum AS1.132,Clostridium acetobutylicumAS1.134和Clostridium beijerinckii NCMIB 8052,在多种糖源下进行发酵培养,通过比较其在不同糖源条件下的生长情况、糖利用率、丁醇及副产物产量、对丁醇、木糖耐受能力等,综合筛选出了最适用于发酵生产丁醇的备选菌种。NCMIB8052因具有最高产量、相对优良的耐受性及可利用多种糖源的特点,而被确定为发酵能力最强的菌种。