冻土甲烷循环微生物群落及其对全球变化的响应

冻土是陆地生态系统中最容易受到全球气候变化影响的碳库,既发挥着碳源又起着碳汇的作用。人们非常关注贮存于冻土中有机碳的最终归宿,是因为全球气候变暖会加快冻土的解冻,释放更多的温室气体（二氧化碳和甲烷）到大气中,从而进一步加剧温室效应。据估计每年从北半球冻原陆地生态系统释放进入大气的甲烷约占全球自然界释放甲烷总量的25%。研究证实冻土生物源甲烷的产生和消耗分别由耐(嗜)低温的产甲烷菌(methanogens)和甲烷氧化菌(methanotrophs)介导。鉴于冻土甲烷循环对全球甲烷平衡的显著作用以及在冻土生物地球化学循环中的重要功能,对介导冻土甲烷循环的产甲烷菌和甲烷氧化菌的研究将有助于更好地评估冻土生态系统对全球气候变化的响应和影响,本文就冻土甲烷循环过程、产甲烷菌、甲烷氧化菌的群落结构、活动、生态功能及其对气候和环境变化的响应机制的最新研究进行综述,以期为我国开展冻土甲烷循环机理研究提供支持。     

微生物介导的甲烷厌氧氧化过程及其影响因子研究进展

温室气体甲烷减排是全球变化领域的研究热点,甲烷厌氧氧化(anaerobic methane oxidation,AOM)过程是一个以前被忽视的甲烷汇,在调控全球甲烷收支平衡及减缓温室效应等方面扮演着十分重要的角色。AOM微生物以甲烷为唯一电子供体,与硫酸盐(SO42-)、亚硝酸盐(NO2-)/硝酸盐(NO3-)、金属离子(Fe3+、Mn4+、Cr6+)等结合完成氧化还原过程,该过程是耦合碳、氮、硫循环的关键环节。本文系统整理分析了不同AOM类型、发生机理、相关功能微生物类群(ANME-1、ANME-2、ANME-3、NC10、MBG-D)及影响AOM过程的关键调控因子的最新研究进展。结果发现,目前80%以上研究都集中在对最常见电子受体类型(SO42-/NO3-/NO2-/Fe3+/Mn4+)的AOM相关过程,而忽视了潜在的新型电子受体(AQDS/HAs O42-/Cr6+/ClO4-等)的耦合作用过程和相对应的微生物类型及作用机理。对未来AOM研究方向提出展望,以期为研究甲烷厌氧氧化菌在不同生态系统中的生态分布及减缓全球温室气体排放提供新的思路。     

甲烷氧化细菌氧化活性影响因素的研究

分别对土壤含水量、温度、施肥措施、土壤中CO_2和O_2含量等几个影响甲烷氧化细菌氧化活性的因素作一综述,分析其原因,为今后进一步研究奠定基础。     

亚硝酸盐型甲烷厌氧氧化及其功能微生物研究进展

亚硝酸盐型甲烷厌氧氧化（nitrite-dependent anaerobic methane oxidation,N-DAMO）是耦合氮循环和碳循环的关键环节,主要是由亚硝酸盐型甲烷厌氧氧化菌（Candidatus Methylomirabilis oxyfera）介导完成,对于研究全球氮和碳元素的生物地球化学循环具有重要意义。本文首先总结了国内外N-DAMO的影响因素和在不同自然生态系统中的分布;然后阐述了N-DAMO菌的生理生化特性及其富集培养优化实验和检测技术,最后探讨了N-DAMO技术的应用现状。本综述不仅有助于揭示全球碳氮循环的耦合作用机制,也为N-DAMO反应耦合其他厌氧生物处理过程应用到污水的除碳脱氮上提供了理论依据。     

甲烷氧化细菌的电子显微镜观察

采用冷冻蚀刻、超薄切片和负染色电镜技术,对 Methylomonas sp. 761M和Methylosinus sp．81Z两抹甲烷氧化细菌的细微结构进行了观察。在冷冻蚀刻中,缅胞从质膜和细胞壁外膜的中央劈开,暴露出四个断裂面。各个断面的结构有所不同,显示出颗粒、小杆、乳状突起、小坑和光滑区等结构。冷冻蚀刻揭示的多层结构,与超薄切片和负染色观察结果一致。此外,对甲烷氧化细菌细胞壁表面图案,细胞内膜结构进行了观察。     

大气甲烷的源和汇与土壤氧化 (吸收)甲烷研究进展

甲烷是主要的温室气体之一,对温室效应的贡献仅次于CO₂,而每分子甲烷温室增温潜力是CO₂的21倍.因此确定全球大气甲烷的源与汇,并对其进行估算、预测已成为目前全球环境变化及温室效应研究的一个热点.本文概述了国内外大气甲烷源与汇研究的进展情况,详述了土壤氧化(吸收)大气与内源甲烷机理及其影响因子(如土地利用情况、环境甲烷浓度、土壤温度、湿度、pH值、孔隙状况等).最后指出,通过在长白山森林垂直分布带开展地带性土壤甲烷氧化(吸收)研究,对估算我国温带至寒带、高山苔原带土壤吸收甲烷总量,乃至全球甲烷汇具有重要意义.     

甲烷氧化细菌的一个新种

从沼气发酵装置中,分离出一株H型专性甲烷氧化细菌81Z菌株。它具有甲烷氧化细菌的一般典型性状。根据其极生单鞭毛和过氧化氢酶阴性的特征,该菌株明显地区别于已知的任何一种甲烷氧化细菌,被认为是一个新种并命名为沼气甲基弯菌(Methylosinus methanica)。本文还讨论了它在厌氧条件下的生命活动。     

甲烷氧化菌的研究进展

甲烷氧化菌在全球大气甲烷平衡中起着重要的作用。本文从甲烷氧化菌的分类出发,对甲烷氧化菌氧化菌的生理、生态分布及最新研究进展作一综述。     

内陆湿地与水体甲烷厌氧氧化功能微生物研究进展

内陆湿地与水体(如湖泊、河流、水库等)是温室气体甲烷的重要排放源。微生物介导的甲烷厌氧氧化(anaerobic oxidation of methane,AOM)反应在控制内陆湿地与水体甲烷排放中起着不可忽视的作用,对缓解全球温室效应具有重要意义。内陆湿地与水体易形成缺氧环境,且电子受体的种类和数量繁多,是发生AOM反应的理想生境。近年来,不断有研究表明,内陆湿地与水体中存在多种电子受体(NO₂^-、NO₃^-、SO₄^2-、Fe (III)等)驱动的AOM途径。NC10门细菌和甲烷厌氧氧化古菌(anaerobic methanotrophic archaea,ANME)的一新分支ANME-2d主导了湿地和水体环境中的AOM反应,其中ANME-2d具有根据环境条件选择不同电子受体的潜力。研究系统综述了内陆湿地与水体中不同电子受体驱动的AOM途径及其参与的主要功能微生物类群;分析了AOM反应在控制温室气体甲烷排放中的作用及其环境影响因素;总结了相关功能微生物的分子生物学检测方法及甲烷厌氧氧化活性测定的同位素示踪技术。最后,对未来相关研究方向进行了展望。     

Effects of ammonium on the activity and community of methanotrophs in landfill biocover soils

The influence of NH₄⁺ on microbial CH₄ oxidation is still poorly understood in landfill cover soils. In this study, effects of NH₄⁺ addition on the activity and community structure of methanotrophs were investigated in waste biocover soil (WBS) treated by a series of NH₄⁺-N contents (0, 100, 300, 600 and 1200 mg kg⁻¹). The results showed that the addition of NH₄⁺-N ranging from 100 to 300 mg kg⁻¹ could stimulate CH₄ oxidation in the WBS samples at the first stage of activity, while the addition of an NH₄⁺-N content of 600 mg kg⁻¹ had an inhibitory effect on CH₄ oxidation in the first 4 days. The decrease of CH₄ oxidation rate observed in the last stage of activity could be caused by nitrogen limitation and/or exopolymeric substance accumulation. Type I methanotrophs Methylocaldum and Methylobacter, and type II methanotrophs (Methylocystis and Methylosinus) were abundant in the WBS samples. Of these, Methylocaldum was the main methanotroph in the original WBS. With incubation, a higher abundance of Methylobacter was observed in the treatments with NH₄⁺-N contents greater than 300 mg kg⁻¹, which suggested that NH₄⁺-N addition might lead to the dominance of Methylobacter in the WBS samples. Compared to type I methanotrophs, the abundance of type II methanotrophs Methylocystis and/or Methylosinus was lower in the original WBS sample. An increase in the abundance of Methylocystis and/or Methylosinus occurred in the last stage of activity, and was likely due to a nitrogen limitation condition. Redundancy analysis showed that NH₄⁺-N and the C/N ratio had a significant influence on the methanotrophic community in the WBS sample.     

Response of methanotrophs and methane oxidation on ammonium application in landfill soils

To test the dose effect of ammonium (NH₄ ⁺) fertilization on soil methane (CH₄) oxidation by methanotrophic communities, batch incubations were conducted at a wide scale of NH₄ ⁺ amendments: 0, 100, 250, 500, and 1,000 mg N kg_dry soil ⁻¹. Denaturing gradient gel electrophoresis and real-time quantitative PCR analysis were conducted to investigate the correlation between the CH₄ oxidation capacity and methanotrophic communities. Immediately after the addition of NH₄ ⁺, temporal inhibition of CH₄ oxidation occurred, and this might have been due to the non-specific salt effect (osmotic stress). After a lag phase, the CH₄ oxidation rates of the soils with NH₄ ⁺ fertilization were promoted to levels higher than those of the controls. More than 100 mg N kg_dry soil ⁻¹ of NH₄ ⁺ addition resulted in the reduction of type II/type I MOB ratios and an obvious evolution of type II MOB communities, while less than 100 mg N kg_dry soil ⁻¹ of NH₄ ⁺ addition induced nearly no change of methanotrophic community compositions. The NH₄ ⁺-derived stimulation after the lag phase was attributed to the improvement of N availability for type I MOB. Compared with the controls, 100 mg N kg_dry soil ⁻¹ of NH₄ ⁺ addition doubled the CH₄ oxidation peak value to more than 20 mg CH₄ kg_dry soil ⁻¹ h⁻¹. Therefore, an appropriate amount of leachate irrigation on the landfill cover layer might efficiently mitigate the CH₄ emissions.     

Trichloroethylene oxidation by the membrane-associated methane monooxygenase in type I,type II and type X methanotrophs

Trichloroethylene (TCE) oxidation was examined in 9 different methanotrophs grown under conditions favoring expression of the membrane associated methane monooxygenase. Depending on the strain, TCE oxidation rates varied from 1 to 677 pmol/min/mg cell protein. Levels of TCE in the reaction mixture were reduced to below 40 nmolar in some strains. Cells incubated in the presence of acetylene, a selective methane monooxygenase inhibitor, did not oxidize TCE.Cultures actively oxidizing TCE were monitored for the presence of the soluble methane monooxygenase (sMMO) and membrane associated enzyme (pMMO). Transmission electron micrographs revealed the cultures always contained the internal membrane systems characteristic of cells expressing the pMMO. Naphthalene oxidation by whole cells, or by the cell free, soluble or membrane fractions was never observed. SDS denaturing gels of the membrane fraction showed the polypeptides associated with the pMMO. Cells exposed to ¹⁴C-acetylene showed one labeled band at 26 kDa, and this protein was observed in the membrane fraction. In the one strain examined by EPR spectroscopy, the membrane fraction of TCE oxidizing cells showed the copper complexes characteristic of the pMMO. Lastly, most of the strains tested showed no hybridization to sMMO gene probes. These findings show that the pMMO is capable of TCE oxidation; although the rates are lower than those observed for the sMMO.     

Effect of mineral nutrients on the kinetics of methane utilization by methanotrophs

The effect of different mineral nutrients on the kinetics of methane biodegradation by a mixed culture of methanotrophic bacteria was studied. The substrate factors examined were ammonia, iron, copper, manganese, phosphate, and sulphide. The presence of iron in the growth medium had a strong effect on the yield coefficient. Yield coefficients up to 0.49 mg protein per mg methane were observed when iron was added at concentrations of 0.10–5.0 mg/l. Iron addition also increased the maximum methane utilization rate. The same effect was observed after addition of ammonium to a medium where nitrate was the only nitrogen source. The observed Monod constant for methane utilization increased with increasing concentration of ammonia. This shows that ammonia is a weak competitive inhibitor as observed by other researchers. Relatively high levels of both ammonia (70 mg/l) and copper (300 µg/l) inhibited the methane degradation, probably due to the toxic effect of copper-amine complexes.     

The absolute requirement for carbon dioxide for aerobic methane oxidation by a methanotrophic-heterotrophic soil community of bacteria

An aerobic methanotrophic-heterotrophic soil community has been characterised when growing with different partial pressures of CO₂. The methanotrophic population using methane as carbon source reached 3 × 10⁷ cfu ml^–1 with one of the major methanotrophs being of type II which uses the serine pathway for C assimilation. Optimal methanotrophic activity required the addition of CO₂, and in the absence of CO₂ no methane oxidisers grew. Partial pressures of CO₂ from 1.6 to 11.6 kPa gave optimal cell growth and production of soluble organic compounds. Biomass yield, soluble organics and CO₂ production were 0.36, 0.15, and 0.48 mg mg^–1 methane uptake, respectively, with CO₂ at 11.6 kPa. The results presented here may have important implications for the use of methane-oxidising bacteria in bioremedial applications.     

Long-term ozone effects on vegetation, microbial community and methane dynamics of boreal peatland microcosms in open-field conditions

To study the effects of elevated ozone concentration on methane dynamics and a sedge species, Eriophorum vaginatum, we exposed peatland microcosms, isolated by coring from an oligotrophic pine fen, to double ambient ozone concentration in an open‐air ozone exposure field for four growing seasons. The field consists of eight circular plots of which four were fumigated with elevated ozone concentration and four were ambient controls. At the latter part of the first growing season (week 33, 2003), the methane emission was 159±14 mg CH₄ m^?2 day^?1 (mean±SE) in the ozone treatment and 214±8 mg CH₄ m^?2 day^?1 under the ambient control. However, towards the end of the experiment the ozone treatment slightly, but consistently, enhanced the methane emission. At the end of the third growing season (2005), microbial biomass (estimated by phospholipid fatty acid biomarkers) was higher in peat exposed to ozone (1975±108 nmol g^?1 dw) than in peat of the control microcosms (1589±115 nmol g^?1 dw). The concentrations of organic acids in peat pore water showed a similar trend. Elevated ozone did not affect the shoot length or the structure of the sedge E. vaginatum leaves but it slightly increased the total number of sedge leaves towards the end of the experiment. Our results indicate that elevated ozone concentration enhances the general growth conditions of microbes in peat by increasing their substrate availability. However, the methane production did not reflect the increase in the concentration of organic acids, probably because hydrogenotrophic methane production dominated in the peat studied. Although, we used isolated peatland microcosms with limited size as study material, we did not find experimental factors that could have hampered the basic conclusions on the effects of ozone.     

Changing land use reduces soil CH4 uptake by altering biomass and activity but not composition of high-affinity methanotrophs

Forest ecosystems assimilate more CO₂ from the atmosphere and store more carbon in woody biomass than most nonforest ecosystems, indicating strong potential for afforestation to serve as a carbon management tool. However, converting grasslands to forests could affect ecosystem–atmosphere exchanges of other greenhouse gases, such as nitrous oxide and methane (CH₄), effects that are rarely considered. Here, we show that afforestation on a well-aerated grassland in Siberia reduces soil CH₄ uptake by a factor of 3 after 35 years of tree growth. The decline in CH₄ oxidation was observed both in the field and in laboratory incubation studies under controlled environmental conditions, suggesting that not only physical but also biological factors are responsible for the observed effect. Using incubation experiments with ¹³CH₄ and tracking ¹³C incorporation into bacterial phospholipid fatty acid (PLFA), we found that, at low CH₄ concentrations, most of the ¹³C was incorporated into only two PLFAs, 18 : 1ω7 and 16 : 0. High CH₄ concentration increased total ¹³C incorporation and the number of PLFA peaks that became labeled, suggesting that the microbial assemblage oxidizing CH₄ shifts with ambient CH₄ concentration. Forests and grasslands exhibited similar labeling profiles for the high-affinity methanotrophs, suggesting that largely the same general groups of methanotrophs were active in both ecosystems. Both PLFA concentration and labeling patterns indicate a threefold decline in the biomass of active methanotrophs due to afforestation, but little change in the methanotroph community. Because the grassland consumed CH₄ at a rate five times higher than forest soils under laboratory conditions, we concluded that not only biomass but also cell-specific activity was higher in grassland than in afforested plots. While the decline in biomass of active methanotrophs can be explained by site preparation (plowing), inorganic N (especially NH₄⁺) could be responsible for the change in cell-specific activity. Overall, the negative effect of afforestation of upland grassland on soil CH₄ uptake can be largely explained by the reduction in biomass and to a lesser extent by reduced cell-specific activity of CH₄-oxidizing bacteria.     

Tobermolite effects on methane removal activity and microbial community of a lab-scale soil biocover

Three identical lab-scale biocovers were packed with an engineered soil (BC 1), tobermolite only (BC 2), and a mixture of the soil and tobermolite (BC 3), and were operated at an inlet load of 338–400 g-CH₄ m^?2 d^?1 and a space velocity of 0.12 h^?1. The methane removal capacity was 293 ± 47 g-CH₄ m^?2 d^?1 in steady state in the BC 3, which was significantly higher than those in the BC 1 and BC 2 (106 ± 24 and 114 ± 48 g-CH₄ m^?2 d^?1, respectively). Quantitative PCR indicated that bacterial and methanotrophic densities (6.62–6.78 × 10⁷ 16S rDNA gene copy number g-dry sample^?1 and 1.37–2.23 × 10⁷ pmoA gene copy number g-dry sample^?1 in the BC 1 and BC 3, respectively) were significantly higher than those in the BC 2. Ribosomal tag pyrosequencing showed that methanotrophs comprised approximately 60 % of the bacterial community in the BC 2 and BC 3, while they only comprised 43 % in the BC 1. The engineered soil favored the growth of total bacteria including methanotrophs, while the presence of tobermolite enhanced the relative abundance of methanotrophs, resulting in an improved habitat for methanotrophs as well as greater methane mitigation performance in the mixture. Moreover, a batch experiment indicated that the soil and tobermolite mixture could display a stable methane oxidation level over wide temperature (20–40 °C, at least 38 μmol g-dry sample^?1 h^?1) and pH (5–8, at least 61 μmol g-dry sample^?1 h^?1) ranges. In conclusion, the soil and tobermolite mixture is promising for methane mitigation.