干旱与盐胁迫对花生根际土壤细菌群落结构和花生产量的影响

以花生品种花育25号为试验材料,采用盆栽试验研究了开花期干旱和盐分胁迫对花生生长发育和荚果产量的影响,并运用高通量测序技术分析干旱、盐胁迫及旱盐双重胁迫下,花生根际土壤细菌群落结构的变化特征。结果表明: 不同胁迫处理花生根际土壤细菌群落均以变形菌门、放线菌门、Saccharibacteria、绿弯菌门、蓝藻菌门和酸杆菌门为主。干旱、盐胁迫及旱盐双重胁迫均不同程度降低了变形菌门和放线菌门的相对丰度,但显著提高了蓝藻菌门的含量,且旱盐双重胁迫较其单一胁迫引起的根际蓝藻菌门丰度变化更显著。土壤细菌功能预测分析显示,信号转导机制、防御机制及翻译后修饰、蛋白质周转和分子伴侣等相关功能在旱盐双重胁迫的细菌中活性更强,可能对花生生长及胁迫应答具有重要影响。统计学分析显示,开花期干旱、盐胁迫和旱盐双重胁迫严重影响花生生长发育,并显著降低产量。研究结果可为通过改良土壤微生物环境来提高植物胁迫耐受性提供参考。     

两种盐生植物根际土壤细菌多样性和群落结构

应用高通量测序技术对西北干旱区两种盐生植物黑果枸杞和里海盐爪爪根际土壤细菌的多样性和群落结构进行研究,旨在揭示两种耐盐植物根际土壤细菌之间以及根际与非根际细菌群落结构间的差异,为深入研究盐生植物根际土壤微生物与耐盐性之间的关系提供理论基础。结果表明:黑果枸杞、里海盐爪爪根际细菌多样性丰度高于非根际土,黑果枸杞根际土壤细菌多样性丰度高于里海盐爪爪。根际和非根际土壤细菌群落的组成和丰度存在差异,从黑果枸杞和里海盐爪爪根际土壤中分别检测出细菌21门289属和22门304属,而从非根际土壤中分别检测出28门285属和24门336属;在两种盐生植物根际土壤中,变形菌门和厚壁菌门均为优势门;拟杆菌门、放线菌门、蓝细菌门及浮霉菌门在根际土壤中的丰度显著高于非根际土壤,而厚壁菌门在根际土壤中的丰度低于非根际土壤。两种植物根际土壤中的细菌优势门和优势属的数量均高于非根际土壤,在黑果枸杞和里海盐爪爪的根际土壤中的细菌优势属分别有10个和9个,而二者非根际土壤中的细菌优势属各有4个,其中假单胞菌属是根际和非根际土壤中的共有优势属。黑果枸杞和里海盐爪爪根系细菌群落组成和丰度存在差异,只有假单胞菌属和盐单胞菌属是两种植物根际土壤中的共有优势属。Unifrac分析和聚类分析表明,两种盐生植物根际土壤细菌之间的相似性大于根际和非根际细菌群落间的相似性。细菌多样性与土壤有机碳、有机质、总氮正相关,与pH、电导率负相关,电导率和pH,有机碳和总氮分别是非根际土,根际土壤细菌群落物种组成的主要影响因素。     

干旱胁迫对蒙古黄芪生物量及其根际微生物种群数量的影响

以‘武川’和‘浑源’2个蒙古黄芪地方品种为试材,采用盆栽控水模拟干旱处理,研究干旱胁迫下黄芪生物量及根际微生物数量的动态变化规律。结果显示：随着干旱程度的加剧,2个品种的根际细菌和放线菌种群数量均呈先上升后下降的变化趋势,真菌数量却呈现持续减少,而细菌数量在根际微生物区系中占绝对优势;随干旱强度升高,2个品种黄芪根、叶组织相对含水量均表现出明显的逐渐下降趋势,其地上部生物量、根系生物量也均降低,而根冠比却逐渐增大;黄芪根际各菌类数量与其地上生物量存在显著正相关关系,但与根系生物量无显著相关关系。研究表明,黄芪的生长及其根际微生物数量均受到干旱胁迫的影响,且适度干旱有助于提高黄芪根际细菌及放线菌的数量,从而改变根际微生物群落结构组成,促进黄芪地上生物量的积累。     

盐碱胁迫对小麦幼苗生长和根际细菌群落结构的影响

【背景】植物可通过改变根际微生物群落结构来减轻胁迫,但盐碱胁迫下小麦生长和根际细菌群落结构变化尚待明晰。【目的】明确盐碱胁迫下小麦幼苗生长及根际细菌群落结构变化。【方法】以添加NaCl和Na2CO3调节Hoagland营养液Na+浓度和pH来模拟盐碱胁迫,通过MiSeq高通量测序分析细菌群落结构。【结果】与无胁迫对照相比,单纯盐胁迫使小麦幼苗地上和地下部干重、叶绿素和根际土壤速效氮含量分别显著降低了25.0%、57.1%、21.2%和42.9%(P<0.05);小麦幼苗生长指标和根际土壤速效氮、速效磷、有机质含量及酶活性(除过氧化氢酶)随碱度升高而降低;所有处理的小麦幼苗根际优势菌门(丰度7.1%-71.5%)均为变形菌门(Proteobacteria)、放线菌门(Actinobacteria)和厚壁菌门(Firmicutes),优势属(丰度0.5%-5.1%)有肠杆菌属(Enterobacter)、嗜多甲基菌属(Methyloversatilis)、固氮菌属(Azotobacter)、假单胞菌属(Pseudomonas)和异根瘤菌属(Allorhizobium)。盐碱胁迫未显著...     

不同生境黑果枸杞根际与非根际土壤微生物群落多样性

研究典型生境黑果枸杞根际与非根际土壤微生物群落多样性及其与土壤理化性质间的关系,为进一步研究黑果枸杞抗逆性提供理论数据。采集新疆精河县艾比湖地区(EB)盐碱地、乌苏市(WS)路旁荒地、五家渠市(WQ)人工林带的黑果枸杞根际与非根际土壤,利用Illumina-MiSeq高通量测序技术分析细菌和真菌群落组成和多样性。结果表明:根际土壤细菌多样性高于非根际土壤(WQ除外),而根际真菌多样性低于非根际土壤。WQ非根际土壤细菌和真菌多样性均高于EB和WS;根际细菌多样性排序为EBWSWQ,根际真菌多样性排序为WSEBWQ。根际土壤优势细菌门依次是变形菌门、拟杆菌门、放线菌门、酸杆菌门,真菌优势门为子囊菌门、担子菌门。根际土壤细菌变形菌门、拟杆菌门、酸杆菌门的相对丰度高于非根际土壤,而厚壁菌在根际土壤中的丰度显著降低,真菌优势门丰度在根际土和非根际土中的变化趋势因地区而异; Haliea、Gp10、Pelagibius、Microbulbifer、假单胞菌属、Thioprofundum、Deferrisoma是根际土壤细菌优势属;多孢子菌属、支顶孢属、Corollospora、Cochlonema是根际真菌优势属。细菌、真菌优势类群(门、属)的组成以及丰富度存在地区间差异,厚壁菌门在EB地区的丰富度显著高于含盐量较低的WS、WQ;盐碱生境EB中根际土壤嗜盐细菌的丰度高于非盐碱生境(WQ、WS),如盐单胞菌属、动性球菌属、Geminicoccu、Pelagibius、Gracilimonas、Salinimicrobium等。小囊菌属是EB根际真菌的最优势属,Melanoleuca是WQ和WS的最优势属,地孔菌属、Xenobotrytis、Brachyconidiellopsis、多孢子菌属等在EB根际土壤中的丰度显著高于WQ和WS。非盐碱生境(WS和WQ)的微生物群落之间的相似性较高,并且高于与盐碱环境(EB)之间的相似性,表明土壤含盐量对微生物群落组成丰度具有重要的影响。     

马缨杜鹃根系微生物群落结构及其变化

【目的】为了解野生马缨杜鹃根系微生物的群落结构特征,比较百里杜鹃内马缨杜鹃根际土壤、根表及根内3个生态位微生物群落组成差异,探究杜鹃根系生态位之间、变化菌属间的相互关系,以期为今后杜鹃根系微生物研究提供具有参考价值的数据。【方法】对百里杜鹃内野生马缨杜鹃根系微生物16S rRNA V4区和ITS1区进行高通量测序,比较分析根际土壤、根表及根内微生物群落多样性及组成差异;并基于共变化网络分析进一步探究差异菌属间的相互关系。【结果】马缨杜鹃根系不同的生态位之间,微生物群落结构存在差异,其中以根际土壤与根表、根内差异更为显著,且细菌群落差异小于真菌群落。且从根际-根表-根内,马缨杜鹃根系细菌α-多样性显著下降。马缨杜鹃根系微生物分布于41细菌门和6个真菌门。优势细菌门为变形菌门(Proteobacteria,39.64%±0.08,69.47%±0.12,77.34%±0.07)、酸杆菌门(Acidobacteria,34.10%±0.11,11.03%±0.04,9.18%±0.04)以及放线菌门(Actinobacteria,10.19%±0.03,8.70%±0.02,7.08%±0.01),它们占整体细菌群落总丰度的80%以上。同时8个细菌菌门的相对丰度在根际土壤、根表和根内间显著变化,且它们的相对丰度占细菌群落总丰度的75%以上。真菌主要分布于接合菌门(Zygomycota)、担子菌门(Basidiomycota)和子囊菌门(Ascomycota),它们占整体菌群的99%以上。马缨杜鹃根系存在589个属的细菌,390个属的真菌,从根际-根表-根内,其中25个细菌属和10个真菌属的相对丰度发生显著变化。马缨杜鹃根系微生物群落共变化网络分析表明:在马缨杜鹃根系不同生态位间,除Waitea外,包括枝孢菌属(Cladosporium)、拟盘多毛孢属(Pestalotiopsis)等在内的8个差异真菌菌属均与细菌菌属显著相关,它们相互作用调控微生物群落结构的变化。Bryobacter、Nocardia、Rhizomicrobium和Telmatobacter等核心菌属对马缨杜鹃根系微生物群落共变化网络的变化具有十分重要的调控作用。【结论】百里杜鹃地区马缨杜鹃根际土壤、根表以及根内3个生态位间,微生物群落组成存在差异;而造成微生物组成存在差异这一结果,可能与马缨杜鹃根系密切相关。同时,共变化网络分析揭示出马缨杜鹃根系生态位之间,细菌和真菌彼此间互作。     

玉米和花生间作根际细菌群落结构与PICRUSt的功能预测

禾本科/豆科作物间作能够促进作物生长与产量形成，而根际微生物组被认为与间作产量优势形成关系密切。将玉米和花生进行盆栽间作并设置以下三种根系分隔方式：塑料膜分隔(即全隔玉米与全隔花生)、尼龙网分隔(即网隔玉米与网隔花生)、无分隔处理(即无隔玉米与无隔花生),采用基于16S rRNA基因的高通量测序技术及PICRUSt功能预测分析不同模式下二者根际细菌群落结构与功能类群的变化，以期从土壤微生物组角度阐明玉米/花生间作产量优势形成的内在机制。结果显示：玉米/花生间作明显改变了二者根际细菌群落结构，无隔、网隔玉米的根际细菌群落结构更为相似并区别于全隔玉米，而网隔花生根际细菌群落结构明显区别于无隔、全隔花生。而且，无隔、网隔玉米根际放线菌门的相对丰度显著高于全隔玉米，网隔花生根际放线菌门、厚壁菌门的相对丰度显著高于全隔、无隔花生，而芽单胞菌门呈现相反的变化趋势。在玉米和花生根际，无隔、网隔处理高于全隔处理的OTU也均主要注释为放线菌门。共存网络分析发现，作为玉米根际细菌网络重要节点的Streptomyces、Actinomadura、Arthrobacter、Bacillus等菌属其丰度变化表现...     

十字花科作物根肿病对根际土壤微生物群落的影响

为探究根肿病对十字花科作物根际土壤微生物多样性的影响,以罹病大白菜和健康株根际土壤为研究对象,采用高通量测序技术对2组样本的细菌16S rDNA和真菌ITS基因进行序列测定,分析了样本间的微生物群落结构和组成差异,同时测定根际土壤理化性质,探讨根肿病、土壤微生物群落、土壤环境因子三者的相关性。研究表明:1)患病植株根际土壤pH和总磷、总钾、碱解氮、速效钾含量显著低于正常植株根际土,而交换性钙含量明显增加。2)根肿病的发生降低了根际土壤中细菌种群的丰富度和多样性程度,但对根际土壤中的真菌α-多样性无明显影响。3)变形菌门、拟杆菌门、放线菌门等是所测土壤样本的主要优势细菌种群,其中患病植株根际土壤中拟杆菌门丰度显著高于健康植株根际土壤,放线菌门丰度则显著降低(P0.05)。优势细菌纲为γ-变形菌纲、拟杆菌纲、α-变形菌纲、放线菌纲、酸杆菌纲等,2组土壤样本间多种优势细菌纲相对丰度差异显著。4)根际土壤优势真菌类群为子囊菌门、被孢霉门、担子菌门和壶菌门,其相对丰度在患病和健康株根际土壤样本中均有明显差异。主要真菌纲为散囊菌纲、被孢霉纲、锤舌菌纲等,并且土壤样本间的多种优势真菌纲相对丰度存在显著性差异。5)主坐标分析结果表明病株根际土壤与健康株根际土壤细菌和真菌群落结构差异明显,冗余分析结果显示速效钾和交换性钙是根际土壤微生物群落变化的主要影响因素。研究结果为揭示根肿病发生的根际微生态机制以及研发根肿病综合防控技术提供理论支撑。     

盐胁迫对花生种子际细菌菌群结构的调控

盐胁迫影响种子萌发和植株形态建成,提高盐胁迫下花生种子萌发速率和成苗健苗率是盐碱地花生高产高效栽培的重要环节之一,花生种子际土壤细菌菌群结构与种子萌发关系密切。为揭示盐胁迫对花生种子际微生物菌群结构的影响,以耐盐花生品种（花育25号,HY25）和盐敏感花生品种（花育20号,HY20）为试验材料,采用盆栽实验和高通量测序技术,研究不同耐盐性品种种子萌发吸胀吸水阶段种子际细菌菌群结构的变化。结果表明,种子际土壤细菌群落以变形菌门（Proteobacteria）、厚壁菌门（Firmicutes）、放线菌门（Actinobacteria）、拟杆菌门（Bacteroidetes）及芽单胞菌门（Gemmatimonadetes）等为优势菌门,盐胁迫处理可以不同程度的提高厚壁菌门和放线菌门的相对丰度。在属水平上,盐胁迫可以增加有益菌芽胞杆菌属（Bacillus）的相对丰度,增强盐胁迫下种子存活能力,提高萌发率。细菌功能预测结果显示,信号转导机制、免疫系统和防御机制等相关功能在盐胁迫处理后明显增强,可能是促进花生萌发并增强花生胁迫应答的重要原因之一。种子际优势菌群的鉴定及机理分析可为通过改良种子际土壤微生物环境,提高花生耐盐性和出苗健苗率提供重要的借鉴意义,同时为开发利用盐碱地提供参考。     

抗草甘膦转基因大豆对根际土壤细菌及根瘤菌的影响

转基因大豆是全球种植最广泛的转基因作物,抗除草剂是其最主要的转基因特性.微生物群落是土壤质量的监测指标之一,抗草甘膦转基因大豆及配施草甘膦是否影响大豆根际土壤细菌及根瘤菌群落尚不清楚.本研究基于大田试验,以非转基因亲本大豆‘中豆32’为对照(CK),分析转G10-epsps基因耐除草剂大豆SHZD32-01(GR)及配施草甘膦(GR+G)在大豆各生育时期对根际土壤细菌和根瘤菌的影响.结果表明: 与CK相比,GR、GR+G处理对苗期和成熟期根际土壤pH、总有机碳(TOC)、总氮(TN)、NH₄⁺-N含量等产生影响;GR处理显著增加结荚期根际土壤细菌群落丰度及多样性,GR+G处理显著增加结荚期根际土壤细菌群落多样性,但显著降低苗期和结荚期根际土壤细菌群落丰度;GR、GR+G处理改变了部分优势细菌类群的相对丰度,但不同生育期根际土壤优势细菌类群均为变形菌门、酸杆菌门、拟杆菌门、绿弯菌门、浮霉菌门和放线菌门;GR、GR+G处理改变了根瘤菌类群的相对丰度,但未影响慢生根瘤菌和中华根瘤菌两种主要大豆根瘤菌的相对丰度,且GR+G处理结荚期根际土壤根瘤菌相对丰度显著降低.环境因子分析显示,根际土壤放线菌和根瘤菌群落丰度主要受土壤pH影响.抗草甘膦转基因大豆或配施草甘膦显著影响结荚期根际土壤细菌和根瘤菌,但其影响随大豆的生长而消失.     

Physiological and biochemical changes in different drought-tolerant alfalfa (<Emphasis Type="Italic">Medicago sativa</Emphasis> L.) varieties under PEG-induced drought stress

Medicago sativa L. cv. Longzhong is a nutritious forage plant in dryland regions of the Loess Plateau with strong drought tolerance and broad adaptability. To understand the adaptation mechanism of alfalfa (M. sativa L. cv. Longzhong) to drought stress, growth, and physiological parameters including levels of chlorophyll content, osmotic adjustment, reactive oxygen species (ROS), and antioxidant enzymes and antioxidants were measured under simulated levels of drought (? 0.40, ? 0.80, ? 1.20, ? 1.60, and ? 2.00 MPa). The changes in M. sativa L. cv. Longzhong were compared with those of plants of M. sativa L. cv. Longdong control (Variety I) suited to moderate rainfall areas and M. sativa L. cv. Gannong No. 3 (Variety II) suited to irrigated areas. The results showed that root–shoot ratio, the chlorophyll (a + b) and osmolytes contents, the degree of lipid peroxidation and ROS production, and the levels of antioxidative enzymes and antioxidants increased significantly with increasing drought stress, whereas plant height, aboveground biomass, chlorophyll a/b ratio, leaf water potential (Ψ₁), and relative water content (RWC) decreased in response to drought. The Longzhong variety responded early to beginning drought stress (between 0 and ? 0.4 MPa) compared with the controls. Under drought stress (between ? 0.4 and ? 2.0 MPa), the Longzhong variety had significantly higher belowground biomass, root–shoot ratio, Ψ₁, RWC, catalase (CAT) activity and reduced glutathione content than those of Varieties I and II, but hydrogen peroxide and hydroxyl free radical (OH·) contents were significantly lower. Step regression analysis showed that OH·, CAT, malondialdehyde, superoxide anion-free radical (O ₂ ^·? ), and superoxide dismutase of Longzhong had the most marked response to drought stress. In conclusion, the stronger drought tolerance of the Longzhong variety might be due to its higher water-holding capacity, root–shoot ratio, and ability to coordinate enzymatic and non-enzymatic antioxidant systems, which coordinate the peroxidation and oxidative systems.     

Bacterial diversity at different depths in lead-zinc mine tailings as revealed by 16S rRNA gene libraries

Bacterial communities at 10 cm, 100 cm, and 200 cm depths in a 100-year-old lead-zinc tailing heap were evaluated by constructing 16S rRNA gene libraries. In total, 98 operational taxonomic units (OTUs) were identified from 193 clones at a 3% sequence difference level. The OTU number and species richness decreased with the depth. Species composition was significantly different between the three libraries. Fifty-seven percent of the examined clones were Acidobacteria and 27% belonged to Proteobacteria. Other sequences included Chloroflexi, Firmicutes, Chlamydiae, Actinobacteria, Gemmatimonadetes, Nitrospira, and three unclassified OTUs. Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Firmicutes, and Actinobacteria were mainly distributed in the rhizosphere of naturally colonizing plants; however, Deltaproteobacteria, Acidobacteria, and Chloroflexi tended to inhabit the deeper tailings (below the 100 cm-depth).     

造纸废水活性污泥的微生物群落结构及多样性分析

为探究造纸废水活性污泥中微生物群落结构多样性以及对造纸废水处理效果的影响，利用Illumina MiSeq 高通量测序方法，分析在处理造纸废水过程中，同一运行阶段两个并联氧化沟内活性污泥的微生物群落与多样性组成。结果表明，系统中处理造纸废水的活性污泥在同一废水条件下微生物群落结构总体稳定，优势细菌为绿弯菌门(Chloroflexi)、拟杆菌门（Bacteroidota）、变形菌门（Proteobacteria）、Myxococcota、放线菌门(Actinobacteria）、厚壁菌门(Firmicutes）等。最重要的优势细菌类群为Chloroflexi，相对丰度占比为47.67%~48.22%，远远高于其他废水中Chloroflexi的占比，其中厌氧绳菌纲（Anaerolineae）是其主要成员，占比84.39%~88.34%，可针对性地去除造纸废水中的污染物。造纸废水活性污泥样品中存在大量特殊功能菌群，其在废水中污染物尤其是木质素的去除中发挥着重要作用。     

Water availability effects on antioxidant enzyme activities, lipid peroxidation, and reducing sugar contents of alfalfa (Medicago sativa L.)

To understand alfalfa (Medicago sativa L.) reactions to osmotic stress, solutions with −0.5, −1 and −1.5 MPa osmotic potentials using PEG (Poly ethyleneglycol) and distilled water as control were prepared. In a germination test, eleven alfalfa cultivar seeds were allowed to germinate in these solutions. M. sativa cv. Yazdi and M. sativa cv. Gharayonje, selected as tolerant and sensitive cultivars, respectively, and were used for further studies. In all PEG solutions, root and shoot dry weights decreased in both cultivars. Under different levels of osmotic stress, root to shoot ratio increased significantly in Yazdi, whereas this parameter showed no significant differences in Gharayonje. Yazdi cultivar also showed higher activities of SOD (Superoxide dismutase), APX (Ascorbate peroxidase), CAT (Catalase), POD (Peroxidase), and higher reducing sugar contents of leaves in comparison with Gharayonje. These higher antioxidant activities help the tolerant cultivar to decrease oxidative damages of osmotic stress to membrane lipids as compared with its sensitive counterpart. As a result, electrolyte leakage and the amounts of MDA (Malondialdehyde), were higher in Gharayonje. This study highlights the importance of enzymatic and non-enzymatic antioxidant systems in scavenging reactive oxygen species which is caused by osmotic stress. It is seems that antioxidant systems are more active in tolerant cultivars than those of sensitive ones.     

沙颍河下游城市黑臭内河沉积物微生物群落季节变化特征

为了研究沙颍河下游城市黑臭内河不同季节沉积物微生物群落特征,对安徽省阜阳市黑臭内河中清河、七渔河表层沉积物进行16S rDNA高通量测序。结果发现:黑臭河流中沉积物的微生物多样性指数均不高,但是表现出一定的变化规律,即春季>冬季≥夏季>秋季;通过冗余性分析发现微生物多样性受季节与沉积物pH影响较显著。分析沉积物门水平上的微生物群落结构发现,季节、温度、TN及SOM对微生物影响较大。变形杆菌、厚壁菌门、绿弯菌门、疣微菌门、拟杆菌门和放线菌门等优势菌门的相对丰度在季节水平上存在差异,春季厚壁菌门、绿弯菌门、放线菌门和酸杆菌门相对丰度较高,其中绿弯菌门和酸杆菌门是已知指示污染的微生物,变形杆菌门相对较少。秋季疣微菌门与拟杆菌门相对丰度显著减小,变形杆菌门相对其他季节显著增加。样品中共发现16个硫酸盐还原菌(SRB)菌属,其中Desulfoprunum是丰度最高的菌属。春季沉积物中SRB的类群最多,相对丰度最大;硫酸盐还原菌群与SO42-、TN、SOM、Cl–等呈显著正相关。上述结果为营养盐控制时机的选择从而有效避免河流中黑臭物质的产生提供了一定参考。     

Biomass partition,leaf gas exchange and water relations of alfalfa and milkvetch seedlings in response to soil drying

This study compared physiological and growth responses to water stress of two legume species during the seedling stage. Potted alfalfa (Medicago sativa L. cv. Algonquin) and milkvetch (Astragalus adsurgens Pall. cv. Pengyang earlymaturing vetch) seedlings were grown under well-watered [soil water content (SWC) maintained at 14.92% daily] or water-stressed conditions (drying) for 15 days. Net photosynthetic rate (P _N), transpiration rate (E) and stomatal conductance (g _s) of both species decreased parabolically. When SWC decreased to 7.2% and 10.3%, g _s values for alfalfa and milkvetch were significantly different from those of the respective well-watered plants (p<0.05). When SWC decreased to 6.6% for alfalfa and 6.8% for milkvetch, leaf water potentials (ψ_L) were significantly different from those of the well-watered plants (p<0.05). Thus the difference between the SWC thresholds for a nonhydraulic root signal (nHRS) and a hydraulic root signal (HRS) were 0.6% and 3.5% for alfalfa and milkvetch, respectively. Milkvetch had a lower g _s than alfalfa for a given SWC (p<0.05). Although alfalfa seedlings had a higher dry mass (DM) and root:shoot ratio (R/S) than milkvetch in both treatments (p<0.05), we concluded that milkvetch seedlings had greater drought tolerance than alfalfa.     

Bacterial diversity in rock varnish of extreme arid region of Turpan Basin

The bacterial community composition and diversity in rock varnish of Turpan Basin were investigated by restriction fragment length polymorphism (RFLP) and clone library of the 16S rRNA gene. 114 positive clones were screened, which could be grouped into 28 phylotypes and then further divided into 23 different operational taxonomic units (OTUs). These were affiliated into 5 phyla (Acidobacteria, Proteobacteria, Chloroflexi, Firmicutes and Cyanobacteria). Clones from actinobacteria were the dominant, accounting for 67.5% of total clones in the library, followed by Proteobacteria (15.8%), Chloroflexi (13.2%), Firmicutes (2.6%) and Cyanobacteria (0.9%). Rubrobacter (accounts for 35%) in the phylum Actinobacteria was the dominant genus and contained many species which might be resistant to gamma radiation. A 70% of the library clone sequences showed less 97% similarity to 16S rRNA gene sequences of standard strains obtained by pure culture. Shannon–Wiener index value of this study is 2.52 and is lower than deep-sea sediments, soils, lakes and other environments. Results of this study showed that bacterial diversity in rock varnishes of Turpan Basin was low, but maybe exist a large number of new unknown taxons, especially species that could well adapted to drought and resist radiation.     

Two cultivated legume plants reveal the enrichment process of the microbiome in the rhizocompartments

The microbiomes of rhizocompartments (nodule endophytes, root endophytes, rhizosphere and root zone) in soya bean and alfalfa were analysed using high‐throughput sequencing to investigate the interactions among legume species, microorganisms and soil types. A clear hierarchical filtration of microbiota by plants was observed in the four rhizocompartments – the nodule endosphere, root endosphere, rhizosphere and root zone – as demonstrated by significant variations in the composition of the microbial community in the different compartments. The rhizosphere and root zone microbial communities were largely influenced by soil type, and the nodule and root endophytes were primarily determined by plant species. Diverse microbes inhabited the root nodule endosphere, and the corresponding dominant symbiotic rhizobia belonged to Ensifer for alfalfa and Ensifer–Bradyrhizobium for soya bean. The nonsymbiotic nodule endophytes were mainly Proteobacteria, Actinobacteria, Firmicutes and Bacteroidetes. The variation in root microbial communities was also affected by the plant growth stage. In summary, this study demonstrated that the enrichment process of nodule endophytes follows a hierarchical filtration and that the bacterial communities in nodule endophytes vary according to the plant species.