共查询到18条相似文献,搜索用时 937 毫秒
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聚合酶链式反应-单链构象多态性(PCR-SSCP)技术是一种简便、灵敏的突变检测方法。随着该技术的不断发展和完善,其应用也越来越广泛。尤其是近年来该技术在昆虫学研究中涉及了:基因突变位点的检测、昆虫分类鉴定、多样性分析及连锁图谱的构建等多个领域。文章综述PCR-SSCP技术的发现、原理、在昆虫学研究中的应用及其优点和不足之处。 相似文献
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PCR-SSCP检测肺癌细胞p53基因点突变 总被引:1,自引:0,他引:1
应用溴化乙锭(EB)染色的PCR-SSCP技术对10例非小细胞性肺癌组织标本p53基因外显子5~8进行分析,其中1例在外显子5~6;1例在外显子7;2例在外显子8发现异常电泳带.对1例经SSCP检测异常的p53基因进行核酸序列分析,发现第280位密码子由AGA变成ACA,其编码的氨基酸由丝氨酸变成半胱氨酸.结果证实:非小细胞性肺癌与p53基因突变有关;EB法PCR-SSCP技术是一种简便、可靠的点突变检测法. 相似文献
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目的 建立聚合酶链反应-单链构象多态性(PCR-SSCP)技术快速检测结核分枝杆菌利福平(RFP)耐药相关基因rpoB突变.方法 设计结核分枝杆菌RFP耐药相关rpoB基因PCR引物,建立PCR-SSCP技术检测临床菌株rpoB基因的突变导致的运动变位,同时采用PCR直接测序(PCR-DS)技术检测rpoB基因突变,并对上述方法检测结果进行分析和比较.结果 84株临床菌株均含有rpoB基因;PCR-SSCP和PCR-DS检测结果显示,56株RFP敏感菌株中rpoB基因分别有3株和2株检测出突变,检测特异性分别为94.6% (53/56)和96.4%(54/56);28株RFP耐药菌株中rpoB基因分别有27株和28株发生突变,检测灵敏度分别为96.4%和100%.结论 本研究建立的PCR-SSCP技术能快速、简便、特异、敏感地检测结核分枝杆菌利福平耐药基因rpoB突变,具有临床应用前景. 相似文献
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选取中国工业微生物菌种保藏管理中心(CICC)保藏的假丝酵母属的7个种30株菌, 对其rDNA的ITS1区及ITS2区进行了PCR-SSCP指纹图谱分析, 结果表明在假丝酵母属种水平的区分鉴定中, ITS1区与ITS2区的PCR-SSCP图谱均能对本研究所选7个种的菌株进行显著区分, 比较两个区段的PCR-SSCP图谱及鉴别效果, 发现ITS2区的应用效果要优于ITS1区。 相似文献
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非同位素PCR-单链构象多态性技术的建立和应用 总被引:1,自引:0,他引:1
PCR-单链构象多态性技术(SSCP)问世以来,成为研究基因突变的工具.特别是在分子肿瘤学研究中,广泛应用于癌基因、抑癌基因突变的研究.常规PCR-SSCP采用同位素标记PCR产物,测序板电泳分离突变,在操作和费用上有种种局限,文章建立了一种非同位素PCR-SSCP技术:通过不对称PCR获得单链,普通PAGE分离,经银染检出突变.用这种方法,还研究了四株鼻咽癌细胞株CNE1,CNE2,HK1和SUNE1中肿瘤抑制基因p53基因突变.证实CNE1,CNE2在exon8,HK1在exon5有突变,并发现新建立的细胞株SUNE1在exon8有突变. 相似文献
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利用营养琼脂、MaC培养基从草鱼肠道中分离到3株细菌,暂时编号为TC-1、TC-2和TC-3,通过形态学观察、生理生化特征、药敏试验、动物试验、构建系统发育进化树及PCR-SSCP分析等系统鉴定,结果表明3株菌株均为弗氏柠檬酸杆菌(Citrobacter freundii),其中TC-2菌株对小鼠、斑马鱼有致病性;3株杆菌均对头孢噻肟、头孢曲松、洛美沙星、诺氟沙星等多种药物敏感;系统发育分析表明,3株弗氏柠檬酸杆菌16S rDNA序列与DSM30039模式株同源性分别为99.59%、99.47%和99.53%,且位于系统发育树的同一分支;进一步采用V3区PCR-SSCP分析结果显示弗氏柠檬酸杆菌SSCP图谱中菌株间带型存在差异。 相似文献
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Molecular and genetic analysis of a compound heterozygote for dysprothrombinemia of prothrombin Tokushima and hypoprothrombinemia. 下载免费PDF全文
H Iwahana K Yoshimoto T Shigekiyo A Shirakami S Saito M Itakura 《American journal of human genetics》1992,51(6):1386-1395
The molecular and genetic basis of a compound heterozygote for dys- and hypoprothrombinemia was analyzed. Abnormal nucleotide sequences of the human prothrombin gene were screened by PCR-single-strand conformation polymorphism (PCR-SSCP) with endonuclease digestion and mutated primer-mediated PCR-RFLP. A single nucleotide substitution responsible for dysprothrombinemia of prothrombin Tokushima was detected, as were three polymorphisms. The mutation for hypoprothrombinemia was detected by PCR-single-strand conformation polymorphism (PCR-SSCP) with endonuclease digestion in exon 6, near MboII-RFLP and NcoI-RFLP. Sequencing of PCR-amplified genomic DNA revealed a single base insertion of thymine (T) at position 4177. The resulting frameshift mutation caused both an altered amino acid sequence from codon 114 and a premature termination codon (i.e., TGA) at codon 174 in exon 7. Because exon 7 encodes the kringle 2 domain preceding the thrombin sequence, this frameshift leads to the null prothrombin phenotype. The inheritance of the hypoprothrombinemia gene from the father to the proband was proved by PCR-SSCP with endonuclease digestion and mutated primer-mediated PCR-RFLP. 相似文献
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结核分枝杆菌rpoB基因突变的检测(简报) 总被引:1,自引:0,他引:1
结核病主要是由结核分枝杆菌(Mycobacterium tuberculosis)引起的一种慢性传染性疾病。利福平是结核病化疗方案中一个关键性的药物,它在结核病的短程化疗中起着重要的作用。但是,在我国结核菌对利福平的耐药发生率呈上升局势,而通过传统的依赖生物生长的药敏试验方法进行结核菌对利福平耐药性检测所需时间较长(4-8周),不能满足临床早期开展有效化疗的需要,所以迫切需要建 相似文献
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探讨编码过氧化氢-过氧化物酶的katG基因突变与结核分枝杆菌异烟肼(INH)耐药性的相关关系。根据结核分枝杆菌GenBank中的katG序列,自行设计特异性寡聚核苷酸引物,采用聚合酶链反应-单链构象多态性(PCR-SSCP)分析和直接测序法(DS)分析结核分枝杆菌中katG基因突变情况。以HR37Rv标准株为对照。所有23株敏感菌均未有SSCP结果异常;35株耐药菌中,有2株(5.7%)katG基因扩增阴性,且发生在高度耐药菌中。进一步分析发现,SSCP法突变检出23株(65.7%),测序法突变检出24株(68.6%),符合率为95.8%(23/24)。参照测序法对耐药菌突变序列的分析结果,PCR—SSCP敏感、特异,可快速检测结核分枝杆菌katG耐药基因突变,有利于耐药结核分枝杆菌耐药性的快速检测。 相似文献
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Cauffiez C Lo-Guidice JM Quaranta S Allorge D Chevalier D Cenée S Hamdan R Lhermitte M Lafitte JJ Libersa C Colombel JF Stücker I Broly F 《Biochemical and biophysical research communications》2004,317(2):662-669
The human cytochrome CYP2A13, which is mainly expressed in the respiratory tract, has been shown to be highly efficient in vitro in the metabolism of tobacco-smoke carcinogens and procarcinogens such as 4-methylnitroso-1-(3-pyridyl)-1-butanone (NNK). In order to investigate the extent of CYP2A13 genetic polymorphism in a French Caucasian population of 102 individuals, a screening for sequence variations in the 5'-untranslated and protein encoding regions of its gene was performed using a polymerase chain reaction-single strand conformational polymorphism (PCR-SSCP) strategy. Six polymorphisms in the coding region were identified, including two rare missense mutations (C474G or Asp158Glu, G967T or Val323Leu) and one nonsense mutation (Arg101Stop). This deleterious mutation, the most frequent (5%) in our population, presumably encodes a severely truncated protein. The influence of the nonsense mutation in lung cancer susceptibility was examined by PCR-SSCP using peripheral blood DNA from 204 cases of lung cancer and 201 controls. The CYP2A13*7 allele, which harbours the C301T mutation, was present in 2.0% of controls and 3.4% of cases. However, multivariate analysis showed an elevated risk for small cell lung cancer in subjects heterozygous for the null allele (odds ratio OR=9.9; 95% confidence interval CI=1.9-52.2). This increased risk was not linked to other histological types of lung cancer. 相似文献
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Mutations in the rpoB locus confer conformational changes leading to defective binding of rifampin (RIF) to rpoB and consequently resistance in Mycobacterium tuberculosis. Polymerase chain reaction-single-strand conformation polymorphism (PCR-SSCP) was established as a rapid screening test for the detection of mutations in the rpoB gene, and direct sequencing has been unambiguously applied to characterize mutations. A total of 37 of Iranian isolates of M. tuberculosis, 16 sensitive and 21 resistant to RIF, were used in this study. A 193-bp region of the rpoB gene was amplified and PCR-SSCP patterns were determined by electrophoresis in 10% acrylamide gel and silver staining. Also, 21 samples of 193-bp rpoB amplicons with different PCR-SSCP patterns from RIFr and 10 from RIFs were sequenced. Seven distinguishable PCR-SSCP patterns were recognized in the 21 Iranian RIFr strains, while 15 out of 16 RIFs isolates demonstrated PCR-SSCP banding patterns similar to that of sensitive standard strain H37Rv. However one of the sensitive isolates demonstrated a different pattern. There were seen six different mutations in the amplified region of rpoB gene: codon 516(GAC/GTC), 523(GGG/GGT), 526(CAC/TAC), 531(TCG/TTG), 511(CTG/TTG), and 512(AGC/TCG). This study demonstrated the high specificity (93.8%) and sensitivity (95.2%) of PCR-SSCP method for detection of mutation in rpoB gene; 85.7% of RIFr strains showed a single mutation and 14.3% had no mutations. Three strains showed mutations caused polymorphism. Our data support the common notion that rifampin resistance genotypes are generally present mutations in codons 531 and 526, most frequently found in M. tuberculosis populations regardless of geographic origin. 相似文献
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鸡Myf6基因遗传多态性及其遗传效应研究 总被引:3,自引:0,他引:3
采用测序和单链构象多态(SSCP)的方法分析了Myf6基因在5个优质肉鸡纯系和3个杂交配套系中的遗传分布、遗传变异及群体杂合性等群体遗传信息, 并分析了Myf6基因对胴体性状及肉质性状的遗传效应。结果发现该基因的CDS区域非常保守, 仅在外显子1的47位处发生点突变由G→A, 由于人工选育的原因, 该基因不同基因型的分布在2个优质肉鸡纯系中偏离了Hardy-Weinberg平衡, 并且杂合度较低, 遗传一致性较高, 但在3个杂交配套系中仍都服从Hardy-Weinberg平衡, 杂合度较高, 达到了配套杂交的目的。野生型A基因可显著地提高活重、屠体重、胸肌重和腿肌重(P <0.05), 同时也会降低肉的嫩度。具体地讲, A基因对增加活重、屠体重、胸肌重和腿肌重的加性效应值分别为45.54 g, 41.03 g, 6 g和9.775 g; 对增加肌纤维直径和肌纤维密度的加性效应值分别为1.025 mm和-29.99 mm2。 相似文献
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Acyl-coenzyme A oxidase 1 (ACOX1) is the first enzyme in peroxisomal fatty acid β-oxidation; it is rate-limiting and plays a key role in fatty acid metabolism and fat deposition. ACOX1 is an important candidate gene for meat quality selection through marker-assisted selection. Genomic structural analysis showed that bovine ACOX1 shares 86% identity with human ACOX1. Using PCR-SSCP technology, we discovered a single nucleotide polymorphism (SNP) (A1865C) in exon 13 of the ACOX1 gene. Allele frequencies of this SNP were investigated and evaluated with the χ(2) test in 641 cattle populations; only the Jiaxian red population was not in Hardy-Weinberg equilibrium. Gene heterozygosity, effective allele numbers and polymorphism information content of the bovine ACOX1 locus in seven populations varied from 0.2778 to 0.4954, 1.3846 to 1.9817 and 0.2392 to 0.3727, respectively. We also looked for a potential association of this SNP with ultrasound traits in 327 individuals and found a significant effect on ultrasound backfat thickness and ultrasound marbling score (P < 0.05). Meat quality traits were analyzed in another 71 Qinchuan individuals to determine associations with genotype. Animals with genotype AA had higher mean values of backfat thickness than those with genotypes AC and CC. A represents the base before mutation and C represents the base after mutation. We conclude that this SNP of the ACOX1 gene has potential as a genetic marker for meat quality traits in cattle reproduction and breeding. 相似文献