Dissection of genetic overlap of salt tolerance QTLs at the seedling and tillering stages using backcross introgression lines in rice

QTLs for salt-tolerance(ST)related traits at the seedling and tillering stages were identified using 99 BC2F8 introgression lines(IL)derived from a cross between IR64(indica)as a recurrent parent and Binam(japonica)from Iran as the donor parent.Thirteen QTLs affecting survival days of seedlings(SDS), score of salt toxicity of leaves(SST),shoot K concentration(SKC)and shoot Na concentration(SNC) at the seedling stage and 22 QTLs underlying fresh weight of shoots(FW),tiller number per plant(TN) and plant height(PH)at the tillering stage were identified.Most QTLs detected at the tillering stage showed obvious differential expression to salt stress and were classified into three types based on their differential behaviors.Type I included 11 QTLs which were expressed only under the non-stress condition.Type II included five QTLs expressed in the control and the salt stress conditions,and three of them(QPh5,QPh8 and QTn9)had similar quantity and the same direction of gene effect,suggesting their expression was less influenced by salt stress.Type III included six QTLs which were detectable only under salt stress,suggesting that these QTLs were apparently induced by the stress.Thirteen QTLs affecting trait difference or trait stability of ILs between the stress and non-stress conditions were identified and the Binam alleles at all loci except QPh4,QTn2 and QFw2a decreased trait difference.The three QTLs less influenced by the stress and 13 QTLs affecting trait stability were considered as ST QTLs which contributed to ST.Comparing the distribution of QTLs detected at the seedling and tillering stages,most(69%)of them were genetically independent.Only four were the same or adjacent regions on chromosomes 1,2,8 and 11 harboring ST QTLs detected at the two stages,suggesting that partial genetic overlap of ST across the two stages occurs.It is likely,therefore,to develop ST rice variety for both stages by pyramiding of ST QTLs of different stages or selection against the overlapping QTLs between the two stages via marker-assisted selection(MAS).     

An intragenic distribution bias of DNA uptake sequences in <Emphasis Type="Italic">Pasteurellaceae</Emphasis> and <Emphasis Type="Italic">Neisseriae</Emphasis>

   

Most sequenced strains from Pasteurellaceae and Neisseriae contain hundreds to thousands of uptake sequence (US) motifs in their genome, which are associated with natural competence for DNA uptake. The mechanism of their recognition is still unclear, and I searched for intragenic location patterns of these motifs for clues about their distribution. In all cases, one orientation of the US has a higher occurrence in the reading frame, and in all Pasteurellaceae, the US and the reverse complement motifs are biased towards the gene termini. These findings could help design experimental set-ups to study preferential DNA uptake, thereby further unravelling the phenomenon of natural competence.     

Familial aggregation of metabolic syndrome and its components in a large Chinese population

Objective: To investigate the familial aggregation of metabolic syndrome (MetS) and its components in the Chinese. Methods and Procedures: A total of 17,954 subjects from 5,224 families with multiple siblings aged 25–64 years old (mean age 45.8 years, 51.6% male) were enrolled from a rural area of Anhui Province of China during 2004–2005. Anthropometric measurement, body composition, blood pressure, plasma lipids, and fasting glucose and insulin, as well as a questionnaire interview, were obtained from each participant. Results: Significant correlations among siblings were observed in all the traits examined, including BMI, waist circumference, total body and abdominal fat percentage, fasting plasma glucose (FPG) and insulin, insulin resistance index of homeostatic model assessment (HOMA‐IR), total cholesterol, triglyceride, high‐density lipoprotein cholesterol (HDL‐C), low‐density lipoprotein cholesterol, and blood pressure, after adjustment for age, gender and some other covariates. The correlation coefficients varied from 0.18 for FPG to 0.42 for HDL‐C. In stratified analyses, we found siblings with a smaller age gap among them had higher intraclass correlation coefficients (ICCs) for most of the above phenotypes than those with a greater age difference, and the correlation of systolic blood pressure (SBP) was stronger in male siblings than that in female. If the eldest sibling is affected by MetS or any of its components, younger siblings bear a twofold to threefold higher risk for developing MetS or any of its components than those with a healthy eldest sibling. Discussion: Our study demonstrated a significant familial resemblance as regards MetS and its components among the Chinese. Further studies are warranted to investigate specific genetic and environmental factors related to MetS in this population.     

mTOR regulates TLR-induced c-fos and Th1 responses to HBV and HCV vaccines

Although IL-12 plays a critical role in priming Th1 and cytotoxic T lymphocyte(CTL) responses, Toll-like receptor(TLR) signaling only induces low amounts of IL-12 in dendritic cells and macrophages, implying the existence of stringent regulatory mechanisms. In this study, we sought to uncover the mechanisms underlying TLR-induced IL-12 expression and the Th1 response. By systemic screening, we identified a number of protein kinases involved in the regulation of TLRinduced IL-12 expression. In particular, PI3 K, ERK, and m TOR play critical roles in the TLR-induced Th1 response by regulating IL-12 and IL-10 production in innate immune cells. Moreover, we identified c-fos as a key molecule that mediates m TOR-regulated IL-12 and IL-10 expression in TLR signaling. Mechanistically, m TOR plays a crucial role in c-fos expression, thereby modulating NFκB binding to promoters of IL-12 and IL-10. By controlling the expression of a special innate gene program, m TOR can specifically regulate the TLR-induced T cell response in vivo. Furthermore, blockade of m TOR by rapamycin efficiently boosted TLR-induced antigen-specific T and B cell responses to HBV and HCV vaccines. Taken together, these results reveal a novel mechanism through which m TOR regulates TLR-induced IL-12 and IL-10 production, contributing new insights for strategies to improve vaccine efficacy.     

《中国生物多样性红色名录》的制定 及其对生物多样性保护的意义

早在20世纪80年代, 我国就引入IUCN红色名录原理, 对我国生物物种的濒危状况开展评估工作。但是随着经济发展和气候变化, 一些物种的数量和分布区发生了变化, 加之在以往的评估中存在一些不足, 亟需对我国生物物种的濒危状况开展一次全面的评估。2008年, 环境保护部联合中国科学院启动了《中国生物多样性红色名录》的编制工作, 《中国生物多样性红色名录——高等植物卷》和《中国生物多样性红色名录——脊椎动物卷》分别于2013年9月和2015年5月正式对外发布。本文回顾了《中国生物多样性红色名录》的编制背景、过程和取得的成果。《中国生物多样性红色名录》完成了对我国34,450种高等植物和除海洋鱼类外的4,357种脊椎动物受威胁状况的评估, 是迄今为止对象最广、信息最全、参与专家人数最多的一次评估。在评估中取得了一系列成果: 统计了中国已知高等植物和脊椎动物物种数, 确定了物种丰富度在世界上的排名; 完善了国际上所使用的IUCN红色名录评估等级标准体系; 评估分析了我国已知高等植物和脊椎动物的受威胁程度及分布差异; 评估分析了高等植物和脊椎动物濒危灭绝的原因, 其中人类活动导致的生境丧失和退化是首要因素。这些成果将对我国生物多样性保护和管理工作产生积极的影响。     

通过红色名录评估研究中国内陆鱼类受威胁现状及其成因

根据已有的基础资料, 采用IUCN评估等级和标准, 对中国目前已鉴定的1,443种内陆鱼类受威胁现状进行了评估。评估结果显示, 1,443种内陆鱼类中, 灭绝3种、区域灭绝1种、极危65种、濒危101种、易危129种、近危101种、无危454种和数据缺乏589种。同已有的IUCN评估结果相比, 本次被评估的物种数目多, 受威胁物种大幅度增加, 其数目达295种, 占已知中国内陆鱼类总数的20.44%, 低于全球平均值(29%)。属于灭绝等级的鱼类是大鳞白鱼(Anabarilius macrolepis)、异龙鲤(Cyprinus yilongensis)和茶卡高原鳅(Triplophysa cakaensis); 属于区域灭绝等级的鱼类是长颌北鲑(Stenodus nelma)。鲤科是受威胁物种数最多的科, 其中裂腹鱼亚科和鲤亚科的种类受威胁程度最高。长江上游和珠江上游受威胁物种最多, 是受威胁最严重的地区。中国内陆鱼类受威胁的主要因素为河流筑坝、生境退化或丧失、酷渔滥捕和引进外来种。列入数据缺乏等级的鱼类较多, 占中国内陆鱼类的40.82%, 表明对中国内陆鱼类物种多样性了解不充分, 需要加强野外调查以积累基础资料。     

通过红色名录评估研究中国哺乳动物受威胁现状及其原因

依据中国哺乳类野生种群与生境现状, 我们利用IUCN Red List Categories and Criteria (Version 3.1), Guidelines for Using the IUCN Red List Categories and Criteria和Guidelines for Application of IUCN Red List Criteria at Regional and National Levels (Version 4.0), 评价了中国所有已知的673种哺乳动物的濒危状况。本次评估了71种《IUCN濒危物种红色名录(2015)》没有评估的哺乳动物, 还评估了60种《IUCN濒危物种红色名录(2015)》误认为中国没有分布的哺乳动物。发现中国有3种哺乳动物“野外灭绝”, 3种“区域灭绝”。受威胁中国哺乳动物共计178种, 约占评估物种总数的26.4%, 高于IUCN濒危物种红色名录的物种平均受威胁率(21.8%)。中国哺乳动物1/4的特有种属于受威胁物种。受威胁比例最高的目是灵长目、食肉目与鲸偶蹄目。多数省区的受威胁哺乳动物物种占本省区哺乳动物总数的20-30%。中国哺乳动物种类多分布在中国第二级地理阶梯。生活在高海拔地区的哺乳动物虽然种类少, 但是受威胁哺乳动物的种类比例高。过度利用、生境丧失和人类干扰名列受威胁哺乳动物致危因子的前3位。自从1989年《中华人民共和国野生动物保护法》实施以来, 一些中国濒危哺乳动物的生存状况得到了改善。然而, 鉴于中国哺乳动物区系的独特性和多样性, 以及中国地形地貌的复杂性, 如何拯救这些濒危物种仍是中国生物多样性保护的一项艰巨任务。     

秦岭太白红杉球果与种子特性及其与环境的关系

太白红杉(Larix chinensis)是研究秦岭高山林线与环境因子关系的理想树种, 球果与种子特征易受基因和环境的共同影响, 是决定林线迁移和分布格局的关键因素。应用单因素方差、多重比较分析坡向和居群间的球果与种子差异, 采用变异系数和表型分化系数分析球果与种子特征的变异来源, 运用Pearson相关系数、RDA排序分析球果与种子特征与环境因子的关系。结果表明: (1) 南坡和北坡的球果与种子特征差异不显著, 北坡4个球果与种子特征在不同居群间均存在显著差异(P<0.05), 南坡的球果重和平均种子数在不同居群间差异显著(P<0.05); (2) 南坡的变异系数和表型分化系数均高于北坡; 且南北坡球果与种子特征表型分化系数(Vst)均小于0.5, 说明变异主要存在于种群内, 异质的生境是球果与种子差异的重要因素; (3) 环境因子与太白红杉4个球果与种子特征相关系数的绝对值从大到小依次为: 海拔>土壤速效钾>坡向>pH值>土壤碱解氮>土壤有机质>土壤速效磷>坡度; 海拔与球果与种子特征平均相关性最强(r=-0.475), 是限制太白红杉分布的重要因素。研究表明, 球果与种子差异主要来自太白红杉对环境的响应, 海拔是限制太白红杉分布的重要因素。该研究揭示了林线树种太白红杉分布的限制因素, 为生长抑制假说提供了数据支撑, 也为该物种的保护提供理论依据。     

Expression, refolding, and characterization of a novel recombinant dual human stem cell factor

A novel recombinant dual human stem cell factor (rdhSCF) gene which consisted of a full-length hSCF(1-165aa) cDNA and a truncated hSCF (1-145aa) cDNA, linked by a peptide (GGGGSGGGGSGG) coding region, was constructed and cloned into Escherichia coli expression vector pET-22b. The rdhSCF was expressed at high level in E. coli BL21(DE3) and existed mainly as inclusion bodies. The inclusion bodies were solubilized in urea and refolded by ion-exchange chromatography. After renaturation, the purity of the yielded rdhSCF was up to 90%. Cell proliferation assay showed that the specific activity of the rdhSCF was 2.86x10(5) U/mg, about 1.66 times as high as that of monomer rhSCF expressed in E. coli.     

Expression of a novel recombinant stem cell factor/macrophage colony-stimulating factor fusion protein in baculovirus-infected insect cells

A novel human stem cell factor (SCF)/macrophage colony-stimulating factor (M-CSF) fusion protein gene was constructed, in which the coding regions of human SCF cDNA (1-165aa) and the truncated M-CSF cDNA (1-149aa) were connected by a linker sequence encoding a short peptide GGGGSGGGGSGG. The SCF/M-CSF gene was cloned into baculovirus transfer vector pVL1392 under the control of polyhedrin promoter and expressed in the Sf9 cells (Spodoptera frugiperda). SDS-PAGE and Western blot analysis showed that the purified fusion protein was a homodimer with a molecular weight about 84kDa under non-reducing conditions or a monomer about 42kDa under reducing conditions. The specific activity of rhSCF/M-CSF was 17 times as high as that of monomeric rhSCF to stimulate the proliferation of TF-1 cell. The results of macrophages colony-forming (CFU-M) assay performed with human bone marrow mononuclear cells demonstrated that rhSCF/M-CSF was more potent in promoting CFU-M than the equimolar of SCF, M-CSF or that of two cytokines mixture.