长江口地区五种腹毛类纤毛虫的形态学研究

利用活体观察和蛋白银染色技术, 对采自长江口泥滩潮间带及河道的五种腹毛类纤毛虫进行了形态学研究。包括对两个国内新记录种仁川巴库虫Bakuella (Bakuella) incheonensis和希斯多利织毛虫Histriculus histrio提供了详细的活体特征和纤毛图式信息, 对红色伪角毛虫Pseudokeronopsis rubra、黄色伪角毛虫Pseudokeronopsis flava和冠突伪尾柱虫Pseudourostyla cristata进行了形态学重描述。五种腹毛类纤毛虫的长江口种群与国内外种群均存在不同程度的形态学差异: 仁川巴库虫较韩国原始种群体型大, 口围带小膜和额前棘毛数较多; 希斯多利织毛虫与部分国外种群存在体长差异; 红色伪角毛虫与青岛种群相比形态特征基本吻合但个体大小的波动范围较大; 黄色伪角毛虫与湛江种群相比额棘毛数目较多; 冠突伪尾柱虫较奥地利种群体型较小, 与日本种群相比大核较多。该工作丰富了中国腹毛类纤毛虫多样性的认识。     

利用核糖体DNA限制性酶切谱(ARDRA)分子技术和小亚基单位核糖体RNA(SSrRNA)基因序列分析对五种双眉虫(原生动物,纤毛门,游仆目)种内及种间关系的探讨

从12种限制性内切酶中筛选出6种可获得种间多样性的内切酶:Alu Ⅰ,Taq Ⅰ,Hae Ⅲ,Hinf Ⅰ,Msp Ⅰ,Xba Ⅰ,对广义双眉虫Diophrys-complex5个种(伪寡毛双眉虫Diophrys apoligothrix、悬游双眉虫D.appendiculata、盾圆双眉虫D.scutum、秀丽拟双眉虫Paradiophrys irmgard、针毛类双眉虫Diophryopsis hystrix)共7个种群的核糖体基因(18S小亚基、部分23S大亚基及其内转录间隔区域)进行多位点酶切。结果显示,种间差异明显大于种内差异。利用RAPDistance1.04软件构建的邻接树表明,盾圆双眉虫的3个种群表现出高度的同源性;3个近缘属(双眉虫属、拟双眉虫属、类双眉虫属)可以被明确区分,并支持类双眉虫属与拟双眉虫属的独立性。从GenBank/EMBL数据库中获得广义双眉虫及相近种的小亚基单位核糖体RNA(SSrRNA)基因序列,利用邻接法(NJ),贝叶斯法(Bayesian)和最大简约法(MP)构建的系统发生树具有基本一致的拓扑结构,结果显示:狭义双眉虫属Diophrys为单源发生系,并与类双眉虫属Diophryopsis组成姐妹群;尽管拟双眉虫属Paradiophrys具有广义双眉虫典型的形态学特征,但与尾刺虫属Uronychia有着较近的亲缘关系。本工作同时表明,核糖体DNA限制性酶切(ARDRA)技术可靠地区分纤毛虫的形态相似种,并在双眉虫属间水平的系统关系推定中存在一定的适用性。     

十种旋唇纲纤毛虫的形态学描述

借助活体观察和蛋白银染色方法对采集于中国山东、广东沿海的潮间带、红树林及淡水生境的10种旋唇纲纤毛虫(拉氏伪小双虫Pseudoamphisiella lacazei、四核伪小双虫Pseudoamphisiella quadrinucleata、中华偏全列虫Apoholosticha sinica、维尔伯特泡毛虫Tunicothrix wilberti、海洋后尾柱虫Metaurostylopsis marina、偏澳大利亚速体虫Notohymena apoaustralis、偏寡毛双眉虫Diophrys apoligothrix、寡毛双眉虫Diophrys oligothrix、盾圆双眉虫Diophrys scutum、张氏拟双眉虫Paradiophrys zhangi)进行了活体形态与纤毛图式水平的分类学研究。其中偏澳大利亚速体虫、偏寡毛双眉虫、张氏拟双眉虫为广东地区新记录种。基于新种群, 对张氏拟双眉虫给出了新定义。研究表明, 中华偏全列虫地理分布较广, 可适应从淡水到不同盐度的咸水生境。首次发现, 寡毛双眉虫可在盐度较低的咸水中生存, 显示出其较强的环境适应能力。     

青岛伪角毛虫一新种及表膜下纤毛系(纤毛门:下毛目)

于１９９６年９月在青岛一开放海区扇贝养殖水体内采集到一大型下毛目纤毛虫,经鉴定为一新种,定名为青岛伪角毛虫Ｐｓｅｕｄｏｋｅｒｏｎｏｐｓｉｓ ｑｉｎｇｄａｏｅｎｓｉｓ Ｈｕ ｅｔ Ｓｏｎｇ,ｓｐ．ｎｏｖ．。本文涉及了该种的形态学描述,并对伪角毛虫属中相近种做了比较。     

广东大亚湾七种腹毛类纤毛虫(原生动物,纤毛门)的形态学研究

利用活体观察和蛋白银染色技术对采自广东大亚湾沿岸水体的7个南海新纪录种:紧缩全列虫Holosticha diademata(Rees,1883)Kahl,1932、缩颈半腹柱虫Hemigastrostyla enigmatica(Dragesco & Dragesco-Kernéis,1986)Song&Wilbert,1997、念珠腹棘虫Gastrocirrhus monilifer(Ozaki & Yagiu,1942)Curds & Wu,1983、四核舍太虫Certesia quadrinudeata Fabre-Domergue,1885、斯特后尾柱虫Metaurostylopsis struederkypkeae Shao et al.,2008、盐尖毛虫Oxytricha saltans(Cohn,1866)Kahl,1932、小心毛虫Caryotricha minuta(Xu et al.,2008)Miao et al.,2009等腹毛类纤毛虫进行了形态学再研究,补充了有关活体形态学、纤毛图式以及性状变异等分类学新信息.结果显示,该7种的南海种群与我国北方海域种群之间存在不同程度的形态学差异.     

利用RAPD分析披碱草属、鹅观草属和猬草属模式种的亲缘关系

利用随机扩增多态性DNA（RAPD）技术对小麦族披碱草属、鹅观草属和猬草属3个属的模式种进行了基因组DNA多态性分析。42个引物产物的290条谱带中,257条（88.62%)表现出多态性,说明披碱草属、鹅观草属和猬草属3个属的模式种间具有丰富的遗传多样性。利用290个RAPD标记,计算材料间Nei氏遗传相似性系和遗传距离,在NTSYS程序中利用UPGMA进行聚类。结果表明,Elymus sibiricus种不同居群间的遗传差异较小,遗传距离在0.097-0.180之间。E.sibiricus,Roegneria caucasica和Hystrix patula的种间遗传差异明显,遗传距离在0.458-0.605之间。H.patula与E.sibiricus的亲缘关系较近。R.caucasica与E.sibiricus的亲缘关系较远。     

散斑壳属部分种内及近似种间的RAPD分析

从100个随机引物中选取重复性好、条带清晰的随机引物分别对针叶树和阔叶树上的34个散斑壳(Lophodermiumspp.)菌株进行RAPD-PCR扩增反应,RAPD分析结果与表型性状表现出良好的一致性,从而表明RAPD技术可以较好的应用于散斑壳属种内及近似种间亲缘关系的分析。通过RAPD分析结果与表型性状的比较和分析,明确了部分表型性状在散斑壳属近似种区分方面的重要性。     

广东省十种卷柏属植物RAPD初步分析

采用RAPD标记对卷柏属10种植物进行了分类鉴定、种间亲缘关系及遗传多样性的初步分析。结果显示:10个RAPD引物很好地区分了10个种,每个种均有2~12个种单态特征位点;UPGMA聚类树与有关文献表型分类结果不尽一致;卷柏属不同种具有不同的遗传多样性水平。     

基于18S rDNA遗传距离与GC含量对游走类纤毛虫的分子系统学研究

为了揭示游走类纤毛虫的系统发生,对寄生于淡水鱼类的车轮虫科中的6种车轮虫进行了18S rDNA的测序并获得了9个序列。采用了最大似然法(ML)与贝叶斯法(BI)对GenBank中所有游走类纤毛虫的18S rDNA序列进行了系统树的构建,并首次将SPSS与18S rDNA遗传距离结合分析了游走类纤毛虫的系统发生。研究结果进一步证实了车轮虫属(Trichodina)的非单系发生与小车轮虫属 (Trichodinella) 的有效性。此外,研究结合18S rDNA 的GC含量与遗传距离分析提出了游走类纤毛虫科属及种间新的鉴定依据: 18S rDNA 的GC含量可用于游走类纤毛虫的科属区分,且与游走类纤毛虫的分化密切相关; 18S rDNA的遗传距离在游走类纤毛虫的不同阶元中具有一定的阈值范围,即通常种内遗传距离阈值范围为0.000-0.005,属种间阈值范围为0.005-0.150,当遗传距离大于0.150时,则达到了科间水平。     

鸢尾属植物遗传多样性的 RAPD和ISSR分析

应用RAPD和ISSR标记技术,对来自不同产地的鸢尾属(IrisL.)4个野生种的遗传多样性进行了分析。结果表明,12个RAPD和ISSR引物分别扩增出225和196条带,多态性条带分别为215和196条,多态性条带百分率分别为95.56%和100.00%;种间总基因多样度分别为0.368 9和0.357 5、种内基因多样度分别为0.107 7和0.138 0,表明鸢尾属种间遗传多样性较高,且种间变异大于种内变异。4个野生种中,蝴蝶花(I.japonicaThunb.)的遗传组成较为丰富。此外,种内遗传关系与地理分布和环境差异有一定的相关性。     

Characterization of genetic diversity of some serovars of Bacillus thuringiensis by RAPD

RAPD based fingerprinting of 21 serovars of Bacillus thuringiensis (Bt) representing different serotypes was performed using 19 random decamer primers. A total of 172 polymorphic fragments, ranging in size from 161-2789 bp, were amplified from 13 of the 19 primers. Pairwise genetic similarity analysis revealed very low similarity values, ranging from 3-68%, among the serovars of Bt, indicating high genetic divergence. Nineteen serovars of Bt fell in two major clusters and remaining two formed solitary clusters in the dendogram. Clustering of Bt strains established genetic relatedness between serovars and serotypes. It has been suggested that RAPD analysis can be used for genotypic characterization of Bt to complement flagellar serotyping.     

Phylogeny of certain biocontrol agents with special reference to nematophagous fungi based on RAPd

A number of phylogenetic studies have been carried out on biocontrol agents having similar biological control activity. However, no work has been carried out to determine the phylogenetic relationship amongst various groups of biological control agents with varied biocontrol properties. Our aim was to derive a phylogenetic relationship between diverse biocontrol agents belonging to the deuteromycetes and determine its correlation with their spore morphology and their biocontrol activity. RAPD was used to assess genomic variability in fungi used as biological control agents which included ten isolates of nematophagous fungi such as Arthrobotrys sp., Duddingtonia sp., Paecilomyces sp. and Verticillium sp., along with two isolates of fungal biocontrol agents such as Trichoderma sp. and two isolates of entomopathogenic fungi including Beauveria sp. A plant pathogenic fungus, Verticillium alboatrum was also included to increase the diversity of Deuteromycetes used. A similarity matrix was created using Jaccard's similarity coefficient & clustering was done using unweighted pair group arithmetic mean method (UPGMA). The final dendogram was created using a combination of two programs, Freetree and TreeExplorer. The phylogenetic tree constructed from the RAPD data showed marked genetic variability among different strains of the same species. The spore morphologies of all these fungi were also studied. The phylogenetic pattern could be correlated with the conidial and conidiophore morphology, a criterion commonly used for the classification of fungi in general and Deuteromycetes in particular. Interestingly, the inferred phylogeny showed no significant grouping based on either their biological control properties or the trapping structures amongst the nematophagous fungi as reported earlier by other workers. The phylogenetic pattern was also similar to the tree obtained by comparing the 18S rRNA sequences from the database. The result clearly indicates that the classical method of classification of these deuteromycete members on the basis of their spore morphology is reliable and could be used for identification of these fungi at species level. The PCR fragment pattern polymorphism exhibited by the various species of a genus and different strains of a species indicates that construction of probes from one or more of these fragments will prove to be useful as a rapid tool for identification of species and strains of nematophagous fungi in future.     

Genetic and geographic variation of bulbous barley (Hordeum bulbosum L.) assessed by rapd markers

Estimated the genetic relationships among 21 barley accessions from 17 bulbous barley (H. bulbosum L.), 4 cultivated barley (H. vulgare L.) collected from different part of Turkey were investigated using Random Amplified Polymorphic DNA (RAPD). Eleven informative primers amplified 111 markers of which 98 (89.8%) were polymorphic. A dendogram was constructed using the UPGMA method based on the RAPD markers. The range of genetic similarity was from 0.111 to 0.815. The accessions were grouped into two main clusters based on the molecular data. The H. vulgare and H. bulbosum separated into two groups in the Principle Component Analysis.     

旋唇纲纤毛虫系统发育分子树构建的影响因素

以36种旋唇类高等类群纤毛虫的核糖体小亚基核苷酸(Small subunit ribosomal RNA,SS rRNA)基因序列为素材,比较研究了不同条件(包括外类群、内类群的选择,同一基因不同序列长度的组合,不同建树方法和不同分析软件的使用)对纤毛虫分子系统树构建结果的影响。结果表明,上述因素均可不同程度地影响拓扑结构。结果同时提示,在利用有限数据进行相关研究,特别是在对未明类群的系统关系分析中,必须充分考虑因建树条件的不同所带来的影响。作者同时也建议,在当前可用的分子信息欠充分的前提下,对于纤毛虫任何类群的分子系统学探讨而言,慎重形成结论并尽可能地结合和参照形态学、发生学等资讯,仍是需优先考虑的工作路线。     

Use of RAPD patterns for clone verification and in studying provenance relationships in Norway spruce (Picea abies)

 We have used the RAPD technique to analyse samples of Picea abies obtained from an improvement forestry station. Two types of plant material were harvested, the first being clones and the second provenances from various regions. We first checked the clonal identity of elite tree cuttings and clones; some differences in the RAPD patterns resulting from mis-planting or mis-labelling of cuttings were found. We also established a reference library of RAPD fingerprints for 96 clones, which will serve as a reference source in cases of litigation concerning clone identity. The RAPD technique was also used to study the genetic relationship between nine European provenances of Norway spruce. A dendogram was obtained by individual pairwise comparison of 42 RAPD bands, which separated the nine provenances into two major groups, one containing the Nordic provenances (Sweden and Bielorussia) and another the Alpine provenances (France, Austria, Germany and Belgium). The Belgian provenance, which is not indigenous, is most closely related to the German provenance. We conclude that the RAPD technique is a useful tool for forestry stations in managing propagation operations. Received: 15 June 1996 / Accepted: 11 October 1996     

Genetic and geographic variation of bulbous barley (<Emphasis Type="Italic">Hordeum bulbosum</Emphasis> L.) assessed by RAPD markers

Genetic relationships among 21 barley accessions (17 of bulbous barley H. bulbosum L. and 4 of cultivated barley (H. vulgare L.) collected from different part of Turkey were investigated using Random Amplified Polymorphic DNA (RAPD). Eleven informative primers amplified 111 markers of which 98 (89.8%) were polymorphic. A dendogram was constructed using the UPGMA method based on the RAPD markers. The range of genetic similarity was from 0.111 to 0.815. The accessions were grouped into two main clusters based on the molecular data. The H. vulgare and H. bulbosum separated into two groups in the principle component analysis. The text was submitted by the authors in English.     

Estimation of genetic diversity Among Turkish kale populations (Brassica oleracea var. acephala L.) using RAPD markers

20 populations of kale (B. oleracea var. acephala L.) selected from 127 populations for fresh consumption terms of yield and leaf quality characteristics as superior types using weight-based ranking method from the Black Sea Region of Turkey were evaluated at the DNA level using randomly amplified polymorphic DNA (RAPD) markers compared to some morphological characters. The 7 primers selected from 100 decamers used generated 110 bands, of which 60 (54.5%) were polymorphic. Jaccard's genetic distances were calculated and dendogram was generated using the UPGMA algorithm. The dendogram obtained were classified into three main groups and four subgroups. The accessions showed a limited clustering in compare to morphological characters such as the number of leaf, leaf intentation of the margin, leaf and midrib color and thickness of midrib than geographical characteristics. Leaf color and midrib thickness characters clustered in the same group as OR49 and G18 accessions; S20, G6 and OR37 accessions, respectively.     

Characterization of microbial communities using randomly amplified polymorphic DNA (RAPD).

Similarity among a number of aquatic microbial communities was examined using randomly amplified polymorphic DNA (RAPD), a common polymerase chain reaction (PCR)-based DNA fingerprinting technique. After amplification of whole-community DNA extracts, the PCR products were resolved by agarose gel electrophoresis and the band patterns compared to determine percent similarity. Twelve different primers were used to amplify approximately 100 fragments (total) from each DNA sample; the bands were scored as present or absent and the similarity between each sample was determined using Jaccard's coefficient. From this information. dendrograms were constructed and a bootstrapping procedure was used to assess how well supported the tree topologies were. Principal component analyses were also conducted as a means of visualizing the relationships among samples. Results obtained for two different experimental systems (a pair of tidal creeks and several wells in a shallow groundwater aquifer) correlated well with the temporal and spatial variations in environmental regime at the sites confirming that arbitrarily primed PCR-based DNA fingerprinting techniques such as RAPD are useful means of discriminating among microbial communities and estimating community relatedness. Moreover, this approach has several advantages over other DNA-based procedures for whole-community analysis; it is less laborious and uses smaller quantities of DNA, making it amenable to sample-intensive monitoring, and it does not depend on culturing or the use of selective PCR primers.     

GENETIC VARIABILITY AND SPATIAL SEPARATION IN THE SEA PALM KELP POSTELSIA PALMAEFORMIS (PHAEOPHYCEAE) AS ASSESSED WITH M13 FINGERPRINTS AND RAPDS1

Postelsia palmaeformis Ruprecht is an annual species, occuring from southern California to Vancouver Island, Canada, in upper intertidal sites exposed to extreme wave shock. Because of its limited spore dispersal, discrete and inbred populations are likely on the local scale, yet dispersal of drifting and fertile thalli raises the possibility of outbred populations on a regional scale. M13 minisatellite DNA fingerprinting and random amplified polymorphic DNA (RAPD) marks were used in a complementary fashion to investigate genetic variability among 24 individuals on scales of clusters (= coalesced holdfasts). < 1 m, 10 m, 25 m, 16 km, and 250 km. Based on M13 fingerprinting, genetic relatedness within clusters was extremely high. Three of six clusters had at hast two identical individuals, and similarity values within five clusters were ≧0.90. Similarities between two of three clusters separated by < 1 m were significantly higher than between cluster pairs separated by 25 m and 250 km: however, the similarity between two clusters separated by 25 m was equivalent to the similarity between two clusters separated by 250 km. Thus, genetic relatedness as determined by M13 fingerprinting generally decreased as distance increased to 25 m. Conversely, RAPD data easily discriminated populations separated by 16 and 250 km but were not useful in discriminating individuals from < 1 to 25 m. Results from the complementary data sets suggest that most dispersal occurs over distances of 1–5 m, individuals within a cluster are siblings, and distinguishable biogeographic populations are present along the coast.     

金银花五个品系的RAPD分析及DNA指纹图谱的建立

运用RAPD技术,对5个金银花品系进行遗传多样性研究并构建这5个金银花品系的DNA指纹图谱。从80个引物中筛选出25个带纹清晰,多态性好的引物用于实验。其中,引物SBSD06的扩增条带可以清楚明确区分5个品系,建立其DNA指纹图谱。在清晰、稳定出现的170条带中,153条带具有多态性。按UPGMA法进行聚类分析,计算其遗传相似系数,结果显示,金银花5个品系聚为两类,与其形态学分类结果相符。