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1.
The blue mussel Mytilus trossulus occurs in the Pacific and in the North Atlantic. We developed and characterized six microsatellite loci for Baltic M. trossulus. Seventeen microsatellite loci were screened, of which six were polymorphic. The number of alleles among 50 individuals ranged
from 3 to 13 and the observed and expected heterozygosity were 0.09–0.46 and 0.34–0.86, respectively. The loci were also tested
for cross amplification in M. edulis, in which four of the six microsatellite loci were successfully amplified. 相似文献
2.
Fourteen polymorphic microsatellite loci were isolated and characterized from an AC-enriched genomic library of Liriodendron chinense (Magnoliaceae). The average allele number of these microsatellites was 5.2 per locus, ranging from three to eight. The observed
and expected heterozygosity at population level were 0.07–1.00 and 0.10–0.83, respectively. These sets of microsatellites
will be useful for studies of population genetic structure of L. chinense and L. tulipifera as well as to estimate fine-scale gene flow rates. 相似文献
3.
Garrulax morrisonianus, an endemic avian species of Taiwan, inhabits evergreen forests at high elevations of 2,000–3,952 m. In this study, we developed
15 microsatellite primer pairs for genetic study. These markers were screened for 52 samples collected from wild populations
of different geographical regions. The number of alleles ranged from 4 to 13. The expected (H
E) and observed (H
O) heterozygosities were 0.430–0.725 and 0.000–0.500, respectively. All loci were significantly deviated from Hardy-Weinberg
equilibrium due to the heterozygote deficiency.
The authors Tzen-Yuh Chiang, Sao-Cheng Lao, Ya-Fu Lee contributed to the study equally. 相似文献
4.
Chi-Chun Huang Kuo-Hsiang Hung Tsai-Wen Hsu Kuo-Hsiung Wang Chi-Yung Lin Tzen-Yuh Chiang 《Conservation Genetics》2008,9(5):1333-1335
Fatsia polycarpa Hayata (Araliaceae) is an element of evergreen forests at middle elevations in Taiwan, also representing the southern limitation
in distribution of the genus. In this study, we described the development of 11 microsatellite loci from F. polycarpa in Taiwan for genetic studies. These new markers were tested in 20 individuals of 5 populations of the woody species. The
number of alleles ranged from 9 to 18. The expected (H
E
) and observed (H
O
) heterozygosities were 0.80–0.95 and 0.10–0.75, respectively. Six of the 11 microsatellite loci are significantly deviated
from Hardy–Weinberg expectations likely due to the population structure within samples. No linkage disequilibrium were observed
from pairwise comparisons of loci.
Chi-Chun Huang, Kuo-Hsiang Hung, and Tsai-Wen Hsu contributed equally to this article. 相似文献
5.
K. Tanaka Y. Tsumura T. Nakamura 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》1999,99(1-2):11-15
We have developed microsatellite markers (SSRs) applicable to Fagus crenata using the RAHM method and investigated their polymorphisms. We also applied the SSRs in an analysis of a closely related
species, F. japonica. Here we describe the isolation and characterization of nine polymorphic microsatellite markers, of which eight are applicable
to both species. Among 30 individuals of each of F. crenata and F. japonica we detected a total of 79 and 77 alleles, respectively, with an average of 9.9 and 8.6 alleles per locus. The mean expected
heterozygosity (He) was 0.615 (range: 0.216–0.925) in F. crenata and 0.660 in F. japonica (range: 0.259–0.827). The He values were considerably higher than those previously found for isozymes. Paternity exclusion probabilities for multiple
loci, calculated over all loci, were extremely high (0.999 and 0.998 in F. crenata and F. japonica, respectively): sufficiently high to study pollen flow in both species.
Received: 5 December 1998 / Accepted: 28 December 1998 相似文献
6.
We isolated and characterized seven microsatellite loci for the perennial herb Ixeridium dentatum ssp. dentatum, an apomictic triploid distributed throughout the lowland areas of East Asia. The number of alleles ranged from two to seven
in 32 screened individuals of I. dentatum ssp. dentatum from Japan. The observed and expected heterozygosities were 0.000–0.950 and 0.000–0.891, respectively, calculated using genotypes
of 20 individuals of I. dentatum ssp. nipponicum. One locus (msid4) deviated significantly from Hardy–Weinberg equilibrium (P = 0.0001). These microsatellites were also tested for cross-amplification in 11 other taxa of Lactuceae, including five endangered
taxa. These primers should be useful genetic tools not only for Ixeridium but also for other Lactuceae taxa. 相似文献
7.
Achnatherum sibiricum is a threaten and toxic perennial bunchgrass mainly in the north of China. We developed 11 polymorphic microsatellite loci
from A. sibiricum by combining biotin capture method. After validating and scoring, these loci were polymorphic in a test population with the
range of alleles from four to 13 per locus. The observed and expected heterozygosities ranged from 0.1649 to 0.5624 and from
0.3071 to 0.8826, respectively. All 11 microsatellite markers were in Hardy–Weinberg equilibrium. These polymorphic microsatellites
will be useful for genetic diversity analysis and population structure construction for A. sibiricum. 相似文献
8.
In order to study hybridisation, taxonomic boundaries and phylogeography in the genus Pseudopanax (Araliaceae), we developed seven novel microsatellite loci from enriched genomic libraries of P. lessonii and P. crassifolius. These loci were characterised in 16 individuals from a single population of P. crassifolius, and displayed 2–11 alleles per locus. Observed heterozygosities ranged from 0.063 to 0.688. Most loci were polymorphic in
the closely related Pseudopanax species, and several loci amplified widely across the Araliaceae. 相似文献
9.
Tsurng-Juhn Huang Yi-Yen Chen Yen-Ping Li Cheng-Yu Hung Tzen-Yuh Chiang Chang-Hung Chou 《Conservation Genetics》2008,9(5):1389-1391
Pedicularis verticillata L. is a highly valuable herb for traditional Chinese medical treatment. In this report, 11 microsatellite loci from P. verticillata were isolated. The simple sequence repeat (SSR) markers were screened in 23 samples of wild populations of P. verticillata, and eight samples from its sister P. ikomai. The number of alleles ranged from 4 to 13, and value of expected (H
E) and observed (H
0) heterozygosity was 0.62609–0.89662 and 0–0.95652, respectively. All loci were significantly deviated from Hardy–Weinberg
expectations due to the heterozygote deficiency, indicating a dramatic loss of genetic polymorphisms in the restrictedly distributed
species. The markers amplified well in the two species are useful for examining genetic diversity and population genetic structure,
which, in turn, can provide information for establishing conservation strategy for these endangered species. 相似文献
10.
James P. Strange Lionel Garnery Walter S. Sheppard 《Journal of Insect Conservation》2008,12(5):527-537
A population of honey bees (Apis mellifera mellifera L.) with an annual colony brood cycle adapted to a locally abundant floral source in the Landes region of Southwest France
is the subject of genetic conservation efforts. This population is maintained by local beekeepers in an area that experiences
both an annual seasonal influx of non-local colonies and the permanent culture of imported stock. However, some colonies native
to the Landes do not have the adapted brood cycle and their status as ecotypic are in question. The present study used morphology,
mitochondrial DNA and microsatellites to characterize the endemic population and suggests further genetic conservation strategies.
These methods yielded different degrees of discrimination of native and imported colonies and provided a powerful suite of
tools for local resource managers. Colonies from the Landes could be differentiated from non-local French A. m. mellifera populations using morphometric analysis, and from non-native and reference populations using mtDNA and microsatellites. Seven
morphological characters were identified by discriminant analysis as informative for delineating the Landes ecotype from other
A. m. mellifera populations. Mitochondrial haplotypes for the population were characterized and five microsatellite loci were found to be
informative in characterizing the Landes population. Asymmetric gene flow detected with microsatellite alleles was observed
to be 5.5–5.9% from imported to native stocks of honey bees while introgression of native microsatellite alleles into imported
colonies was 21.6%. 相似文献
11.
12.
Naofumi Nomura Kento Fujiwara Tokushiro Takaso Motomi Ito Koichi Uehara Hiroaki Setoguchi 《Conservation Genetics》2009,10(4):1093-1095
Eight microsatellite loci for the perennial herb Farfugium japonicum, including the rheophytic variety luchuense endemic to riparian areas of the Ryukyu Islands, Japan, were isolated and characterised. The number of alleles ranged from
5 to 14. The expected (H
E) and observed (H
O) heterozygosities were 0.344–0.885 and 0.121–0.754, respectively, from 69 individuals in one population. Six loci exhibited
significantly fewer heterozygotes than expected under Hardy–Weinberg equilibrium (P < 0.05). The primers amplifying microsatellite sequences in F. japonicum may provide a population genetics tool useful in the establishment of a conservation strategy. 相似文献
13.
Enrique Blanco Gonzalez Tomoya Murakami Yuki Teshima Kouji Yoshioka Dal-Sang Jeong Tetsuya Umino 《Ichthyological Research》2009,56(1):87-91
We developed four microsatellite DNA loci to test for multiple paternity of black rockfish, Sebastes inermis, from the Seto Inland Sea of Japan. All loci showed a high degree of polymorphism (number of alleles per locus = 10–14, expected
heterozygosity = 0.80) and discriminating power (probability of identity index = 3.71 × 10−6, exclusion probability = 0.999) in unrelated wild specimens (n = 32). Genotypic assignment of five dams (109–220 mm in total length) and 50 embryos from each dam (n = 50) indicated that four dams were mated with a single sire. Only for one dam and three of her embryos we could not exclude
multiple paternity. 相似文献
14.
A total of 12 polymorphic microsatellite loci were developed and characterized for a Chinese medicinal plant, Epimedium brevicornum (Berberidaceae). A genomic DNA enrichment protocol was used to isolate microsatellite loci and polymorphism was explored
using 38 individuals from one natural population. The observed number of alleles ranged from 2–14. The ranges of observed
and expected heterozygosity were 0.00–0.83 and 0.15–0.88, respectively. In addition, successful cross-species amplification
of this set of microsatellite markers in other four medicinal Epimedium species suggested that they would provide a useful tool for the genetic and conservation studies of Epimedium species. 相似文献
15.
Fragmentation of natural habitats of the common vole (Microtus arvalis) provides an excellent model system to study the consequences of restricted gene flow and small population sizes for isolated
populations. Here we describe the isolation and characteristics of 10 autosomal and one X-linked microsatellite marker. These
new markers were tested in 24 voles from a natural population in eastern Germany. Loci were highly polymorphic with numbers
of alleles per locus ranging from three to 26 and expected heterozygosities from 0.51 to 0.97. All loci except for the X-linked
locus Mar105 followed Hardy–Weinberg expectations. Cross-species amplifications revealed that most loci were polymorphic as
well in M. agrestis, M. thomasi, and M. pennsylvanicus. 相似文献
16.
We developed 11 polymorphic microsatellite markers for an endangered shrub Ammopiptanthus mongolicus using the Fast Isolation by AFLP of Sequences Containing repeats protocol. Polymorphism of each locus was assessed in 24
individuals from five natural populations of A. mongolicus. The average allele number of these markers was 4.2, ranging from 2 to 7. The observed (H
O) and expected (H
E) heterozygosities were 0.044–0.956 and 0.044–0.827, respectively. Further assessment in the congeneric species A. nanus revealed that nine of eleven loci were successfully amplified, but only two loci showed polymorphism. These markers provide
powerful tools for the conservation genetics studies of A. mongolicus. 相似文献
17.
Wesley K. Savage 《Conservation Genetics》2008,9(6):1707-1710
Habitat loss is the single greatest threat to persistence of the critically threatened California tiger salamander (Ambystoma californiense). To aid management plans that designate critical habitat for this species, I developed and characterized 21 tetranucleotide
microsatellite markers using two native populations in Santa Barbara and Alameda Counties. Allelic variation and average heterozygosities
were lower in the endangered Santa Barbara population (allele range 1–4, mean 2.4; H
O = 0.308 H
E = 0.288) compared with the threatened Alameda population (allele range 2–10, mean 6.7; H
O = 0.712, H
E = 0.722). In-depth population studies using these markers will provide vital information for plans to assign critical habitat
that optimize gene flow among breeding populations, as well as for identifying non-native hybrid genotypes that threaten native
A. californiense stocks. Beyond the conservation goals for A. californiense, the close phylogenetic relationships within the tiger salamander complex also suggest a broad utility for population studies
using these markers. 相似文献
18.
Tomomi Dan Yuki Mitsui Hajime Ikeda Yuji Isagi Hiroaki Setoguchi 《Conservation Genetics》2009,10(3):507-509
Ten microsatellite loci were isolated and characterized for Shortia rotundifolia, a relict temperate plant on the subtropical Ryukyu Islands and Taiwan. The number of alleles ranged from 2 to 21. The expected
(H
E) and observed (H
O) heterozygosities were 0.027–0.877 and 0.027–0.622, respectively, from 74 individuals on Iriomotejima Island of Ryukyus.
One locus exhibited significantly fewer heterozygotes than expected under Hardy–Weinberg equilibrium (P < 0.05). These primers amplifying microsatellites in this species may provide a useful tool for population genetics to establish
conservation strategy. 相似文献
19.
Hiroaki Setoguchi Yuki Mitsui Hajime Ikeda Naofumi Nomura Atsushi Tamura 《Conservation Genetics》2009,10(3):705-707
Nine microsatellite loci were isolated and characterized for the endangered and tertiary relict perennial herb, Tricyrtis ishiiana. The number of alleles ranged from 2 to 33. The expected (H
E) and observed (H
O) heterozygosities were 0.207–0.944 and 0.215–0.813, respectively, from 96 individuals on one population. Five loci exhibited
significantly fewer heterozygotes than expected under Hardy–Weinberg equilibrium (P < 0.05). These primers amplifying microsatellites in this species may provide a useful tool for population genetics to establish
conservation strategy. 相似文献
20.
A new species of armored searobin, Paraheminodus longirostralis, is described from five specimens collected from New Caledonia at depths of 412–467 m. It is distinguishable from its three
known congeners in having 34 bony plates in the upper lateral row, a forward-directed spine on each plate between the 23rd–26th
and 31st–32nd plates in the upper lateral row, 6–7 + 1 + 20–21 = 27–28 gill rakers, an elongate body posterior to the anus
(49.9–52.1% standard length), an elongate rostral projection (53.0–59.3% head length), short upper jaw (42.1–43.4% head length),
an elongate pectoral fin (70.6–79.4% head length), and long preopercular spine (39.2–57.7% head length). 相似文献