烟草赤星病菌拮抗性大豆根瘤内生菌的筛选及抑制作用

以烟草赤星病菌为供试病原菌,采用对峙法、代谢液培养法对分离自大豆根瘤的内生细菌进行抑菌筛选,对筛选菌株作用的病原菌菌丝进行显微观察,研究筛选菌株细胞培养特征及生理生化特性、16S rDNA测序序列、系统发育,以及进行温室接种防病试验.结果表明: 大豆根瘤内生菌经初筛、复筛,对烟草赤星病菌抑菌率42%以上的有7株菌,分别属于芽孢杆菌属、假单胞菌属、中华根瘤菌属和寡养单胞菌属.显微观察表明,在拮抗性内生菌作用下病原菌菌丝末端出现明显畸形,呈珊瑚状分枝、球状膨大等;代谢液试验表明,内生菌对病原菌的抑制作用主要是内生菌代谢产生的胞外物质在发挥作用;对峙试验表明,芽孢杆菌可迅速形成生物薄膜,有效阻碍病原菌丝生长和延伸.盆栽防病试验表明,拮抗性内生菌处理下烟草病情指数显著低于对照,表明筛选菌株可作为烟草赤星病的生防菌株资源.     

陕北野生甘草内生菌的分离及抑菌活性筛选

采用组织块分离法从陕北野生甘草根中分离出21株内生菌,其中细菌12株,真菌6株,放线菌3株.为明确内生菌代谢产物的抑菌活性,采用抑制菌丝生长速率法和组织测定法系统测定了其发酵液对植物病原真菌的抑制作用.结果表明,在离体条件下,甘草内生菌发酵液对供试的7种植物病原菌菌丝生长均有一定的抑制作用,其中Z4和F1菌株的发酵液对供试病原菌菌丝生长的抑制作用较强,特别是对苹果干腐病菌和烟草赤星病菌的抑制作用最强,抑制率分别可达92.36%、90.16%和91.20%、90.43%,EC50分别仅为54.38、90.31和57.50、89.58 mg·L-1;组织法测定中,发酵液稀释10倍后,Z4和F1菌株对苹果干腐病的保护作用分别为75.39%和73.13%,治疗效果分别为67.61%和60.75%.     

枸骨益生菌的筛选及其抑菌作用

采用涂布平板法分离药用植物枸骨可培养内生细菌,采用对峙法和发酵滤液培养法筛选对植物病原菌具高抑制作用的菌株,通过镜检和显微摄影观察处理组菌丝的变化,对16SrDNA PCR产物进行测序和同源性分析菌株的系统发育关系,通过形态、生理生化特征和16SrDNA序列比对确定菌株的分类地位.从枸骨健康植株的根、茎、叶及果实中分离得到85株内生细菌,筛选出对烟草赤星病菌、稻瘟病菌、棉花枯萎病菌等有较强抑菌作用的10株菌,初步鉴定为4属7种.其中,抑菌效果最强的GG78(60.3％)、GG31 (48.1％)、GG3(61.0％)分别属于阴沟肠杆菌、路德维希肠杆菌和蜡样芽孢杆菌.受抑制病原菌菌丝均发生畸形、扭曲,局部膨大形成原生质浓缩球、菌丝基部出现毛发状细分支等现象,可能与内生菌分泌到胞外具有一定抑菌或杀菌作用的代谢物质如抗生素、水解酶类、生物碱等有关.     

一株白芍内生放线菌的分离、活性及系统发育分析

目的:分离白芍中拮抗农作物致病菌和人类常见病原菌的内生放线菌,并进行系统发育分析。方法:采用3种分离培养基,从白芍根部分离内生放线菌;通过滤纸片法筛选具有拮抗活性的菌株,观察菌丝形态,并进行16S rDNA序列系统发育分析。结果:从白芍中分离得到16株内生放线菌,其中从FYSCA培养基中分离到9株;16株内生放线菌中有6株具有拮抗作用,菌株S-BS033004对5种病原菌有拮抗活性,尤其是对棉花黄萎病菌和小孢拟盘多毛孢菌和耐青霉素类金黄色葡萄球菌的拮抗作用显著,抑菌圈≥20mm。经16S rDNA系统发育分析表明该菌株与Streptomyces anulatus NBRC13369T等6株链霉菌模式菌株亲缘关系较近,相似性均为99.7%。结论:白芍内生放线菌S-BS033004是一株杀菌谱较广的链霉菌,具有很好的开发潜力。     

拮抗棉花枯萎病菌的地黄内生细菌筛选、鉴定和促生潜能

【目的】为了筛选棉花枯萎病菌拮抗性菌株资源,从药用植物地黄根块中分离内生细菌,分析优良菌株的促植物生长特性和耐盐碱特性,发掘优良菌株资源,为研发棉花枯萎病生防菌剂提供参考价值。【方法】采用平板对峙法对分离内生细菌进行棉花枯萎病菌拮抗性试验,荧光显微镜观察法研究病原菌菌丝的变化、分光光度计法测定吲哚乙酸(IAA)含量和1-氨基环丙烷-1-羧酸(ACC)脱氨酶活性、平板培养法测定溶磷特性、分隔培养法测定产生挥发性物质抑菌性、比浊法测定内生菌的耐盐碱特性、通过测定代表菌株理化特性、16S rDNA序列并分析系统发育地位、盆栽接种试验验证防病效果。【结果】地黄内生细菌对棉花枯萎病菌具有拮抗性,其中菌株DH9、DH66、DH92拮抗作用较强。与对照组菌丝对比,处理组菌丝出现打结、弯曲和断裂现象,菌丝末端分枝明显增多,多数边缘菌丝呈珊瑚状分枝,存在明显被菌体包埋等现象。菌株DH83、DH66、DH92、DH9、DH56产生挥发性物质对棉花枯萎病菌均有抑制作用,但抑制效果不明显。产生IAA含量均大于1.32 mg/L的有7株(DH92、DH30、DH71、DH83、DH93、DH9、DH56),其中DH92产量最高,为34.696mg/L。菌株DH92和DH30产生ACC脱氨酶活力分别为118.612μmol/(mg·h)和103.795μmol/(mg·h)。菌株DH92无机磷溶磷能力最强,溶磷圈直径/菌落直径(D/d)为1.51;菌株DH71溶解有机磷能力最强,D/d为4.50。菌株DH9和DH56分别能够耐受在7%、3%NaCl盐浓度,在pH 8–10均能生长,具有一定耐盐碱性。结合菌株培养特征、生理生化特性和16S rDNA测序及系统发育分析,结果表明DH30最相似菌株为沙福芽孢杆菌(Bacillus safensis),DH9最相似菌株为枯草芽孢杆菌(Bacillussubtilis),DH92最相似菌株为菠萝泛菌(Pantoea ananatis)。DH92处理组防治效果达77.29%,其他防效在63%以上,可作为棉花枯萎病的生防菌株资源。【结论】药用植物地黄根块中存在棉花枯萎病菌拮抗性菌株资源,其中菠萝泛菌DH92从地黄根块中分离未曾见报道。优良地黄内生细菌具有促进植物生长特性和一定耐盐碱性,为防治棉花枯萎病和研发生物防治菌剂提供了基础。     

大蒜内生细菌的分离及拮抗菌筛选与鉴定

利用常规分离方法对大蒜鳞茎进行内生细菌的分离,采用对峙法和平板涂布法对分离的内生菌进行拮抗试验研究,并对菌株DSP6进行16S rDNA全序列鉴定。结果表明:分离得到19株内生细菌,其中10株菌对2种以上植物病原真菌有不同程度的抑制作用,占分离菌总数的52.6%,DSN7对番茄早疫病的抑菌圈半径最大,为13mm;17株菌对5种病原细菌中至少1种有抑制作用,占分离菌总数的89.5%,其中菌株DSP3对大肠杆菌的抑菌圈半径最大,达到10 mm;菌株DSP6对供试的9种病原菌有较强的抑菌作用,且抑菌圈平均半径最大,为6.88mm;16S rDNA全序列鉴定显示,菌株DSP6与芽孢杆菌属Bacillus axarquiensis相似性为100%,表明菌株DSP6为Bacillus axarquiensis。     

大豆根瘤内抗棉花枯萎病菌株的筛选及其防病试验

【目的】采用优良抗病性内生菌资源来控制棉花枯萎病是一种有效的措施。本研究从大豆根瘤中筛选棉花枯萎病拮抗性内生细菌,探索其对棉花枯萎病菌丝的抑制作用和代表菌株特性,为发掘和应用防病、抗逆优良菌株提供理论基础。【方法】采用对峙法和代谢液培养法对大豆根瘤内生细菌进行棉花枯萎病菌抑菌性筛选,显微观察法研究筛选菌株引起病原菌菌丝变化,通过菌株培养特征、理化特性和16S r DNA序列同源性分析确定菌株系统发育地位,比色法测定DD174耐盐碱性,盆栽试验验证防病效果。【结果】经复筛和代谢液试验有5株拮抗性较强菌株,被作用病原菌菌丝畸形、细胞壁消失、自溶,菌丝基部加粗、分支增多,呈树根状;菌丝被菌苔包埋而溶解、断裂,菌丝末端球形膨大。对棉花枯萎病菌的抑制作用主要通过菌体产生胞外代谢物发挥作用。菌株DD174、DD176和DD179最相似菌株分别为Bacillus oceanisediminis H2T(GQ292772)和B.thuringiensis ATCC 10792T(AF290545),菌株DD165和DD166最相似菌株均为Stenotrophomonas maltophilia LMG 958T(X95923)。DD174能耐受6%盐浓度,p H 10生长良好,具有一定耐盐碱能力。DD174处理组防治效果达76.32%,其他防效均在62%以上,可作为棉花枯萎病的生防菌株资源。【结论】大豆根瘤内存在棉花枯萎病内生拮抗细菌,其中有些菌株具有一定耐盐碱能力,对棉花枯萎病病原菌及病害有一定抑菌和防病作用。     

甘草内生细菌的分离及拮抗菌株鉴定

从乌拉尔甘草健康植株的根茎叶中共分离到内生细菌98株,经初步鉴定芽孢杆菌属(Bacillus sp.)为优势种群,约占30%;从不同生长年份甘草的根、茎、叶组织中分离内生细菌种群密度从5.0×104cfu/g~2.9×107cfu/g鲜重不等。采用平板对峙方法筛选出6株对植物病原菌有明显体外拮抗活性的菌株,通过菌落、菌体形态观察、生理生化反应及16S rDNA序列分析,同时结合Biolog细菌自动鉴定系统验证,鉴定这6株拮抗菌分属萎缩芽孢杆菌(Bacillus atrophaeus)、多粘类芽孢杆菌(Paenibacillus polymyxa)、枯草芽孢杆菌(Bacillus subtilis)、Paenibacillus ehimensis。     

亳菊内生菌BN7的鉴定与生防促生功能研究

植物内生菌具有增强宿主植物抵抗生物和非生物胁迫的能力,也具有增强宿主植物对磷、钾等矿质元素的分解吸收,进而促进植物的生长。本文采用平板对峙法检测亳菊内生菌BN7对玉米弯孢病菌、黄瓜枯萎病菌、小麦赤霉病菌、串珠镰刀病菌、瓜炭疽病菌、茶叶轮斑病菌等6种植物病原菌的拮抗作用;测定菌株BN7的解磷、解钾、产生长素、降解纤维素能力和对DPPH的清除能力;并根据菌株形态特征、生理生化特征和16S rDNA序列分析对菌株BN7进行鉴定。结果表明:亳菊内生菌BN7对小麦赤霉菌等6种植物病原菌均有抑制作用;菌株BN7使有机磷和无机磷发酵液中可溶性磷分别增加了108.38和68.71 mg/L,使可溶性钾增加了32.03 mg/L,IAA的分泌量高达164.39 mg/L;培养3天菌株BN7羧甲基纤维素酶和滤纸酶的活力达到最高,分别为168.78和79.87 U/mL;培养7天的上清液对DPPH清除率可达82.13%;根据形态学特征、生理生化特征及16S rDNA序列分析,菌株BN7初步鉴定为巨大芽孢杆菌(Bacillus megaterium)。因此,亳菊内生菌BN7是一株具有广谱抗真菌、解磷、解钾、产IAA和降解纤维素能力的巨大芽孢杆菌。     

一株桑树内生拮抗菌的分离、鉴定及发酵条件优化

【目的】利用植物内生拮抗菌防治植物病害是一种有效的生物防治手段。本研究从健康桑树中分离筛选桑椹菌核病拮抗性内生细菌,为桑椹菌核病生物防治提供优良菌种。【方法】釆用组织分离培养法及抑菌圈法分离、筛选桑椹菌核病拮抗性内生细菌;根据菌体形态、培养特征、生理生化特性及基于16S rDNA序列的系统发育分析,对抑菌活性显著且稳定的菌株进行菌种鉴定;进而利用菌丝生长速率法检测活性发酵液的抑菌谱与热稳定性,并通过单因素及正交试验优化该菌株产生抑菌活性物质的发酵条件。【结果】从健康桑树中共分离获得55株内生细菌,其中XP-27菌株对核盘菌PZ-2的抑菌活性稳定且拮抗效果明显;XP-27菌株形态、培养特征、生理生化特性与芽孢杆菌属相符,基于16S rDNA序列的系统发育分析结果显示该菌株与多株甲基营养型芽孢杆菌(Bacillus methylotrophicus)的亲缘关系最近,且处于系统发育树的同一分枝,故将XP-27菌株鉴定为甲基营养型芽孢杆菌,命名为B.methylotrophicusXP-27;抑菌谱与热稳定性实验结果表明XP-27菌株对灰霉菌SWU5、腐霉菌SWU3等10种常见植物病原菌具不同程度的抑制作用,且其发酵滤液热稳定性强;发酵条件优化结果表明该菌株最佳培养基配方与培养条件为:牛肉膏1.00%,淀粉1.50%,K_2HPO_4 0.05%,MgSO_4·7H_2O 0.10%,初始pH值为8.0,培养温度为30°C,接种量为7%,发酵时间为120 h。【结论】筛选获得的桑树内生细菌B. methylotrophicus XP-27对桑椹菌核病病原菌核盘菌PZ-2具有显著拮抗作用,可作为开发桑椹菌核病生防制剂的候选菌株。     

稻瘟病菌拮抗性大豆根瘤内生细菌的筛选及抑制效果

【目的】从河南大豆根瘤的内生细菌资源中筛选对稻瘟病菌有拮抗作用的菌株,初步探讨其抑菌效果,为进一步研究其抑菌机理提供菌种资源。【方法】以稻瘟病菌为供试病原菌,采用对峙法进行拮抗性菌株筛选,显微观察法研究受抑制病原菌菌丝变化,对筛选拮抗性菌株进行细胞形态学及生理生化特性试验、16S rRNA基因测序和系统发育分析及接种防效试验。【结果】经复筛有17株内生菌拮抗效果较明显,最高抑制率为62.16%;受抑制病原菌丝呈现弯曲打结、断裂、原生质浓缩等畸形状态。拮抗性筛选过程中内生菌快速生长形成生物薄膜,包埋菌丝并使其断裂。拮抗菌株分布在7属9种,稻瘟病拮抗性大豆根瘤内生菌呈现种属多样性。防效试验表明内生菌处理组稻苗发病率和病情指数均显著降低,防治效果最高达74.19%。【结论】大豆根瘤内生拮抗性菌株具有种属多样性,拮抗性菌株处理组稻苗发病率和病情指数均显著降低,防治效果显著,为进一步研究其抑菌机理提供菌种资源。     

Effect of Endophytic Fusarium oxysporum on Host Preference of Radopholus similis to Tissue Culture Banana Plants

The burrowing nematode Radopholus similis is one of the major constraints to banana (Musa spp.) production worldwide. Resource-poor farmers can potentially manage R. similis by using naturally occurring banana endophytes, such as nonpathogenic Fusarium oxysporum, that are inoculated into tissue culture banana plantlets. At present, it is unclear at what stage in the R. similis infection process the endophytes are most effective. In this study, the effect of three endophytic F. oxysporum isolates (V5w2, Eny1.31i and Eny7.11o) on R. similis host preference of either endophyte-treated or untreated banana plants was investigated. No differences were observed between the proportion of nematodes attracted to either root segments excised from endophyte-treated or untreated plants, or in experiments using endophyte-treated and untreated tissue culture banana plantlets. These results imply that the early processes of banana plant host recognition by R. similis are not affected by endophyte infection.     

Phylogenetic Analysis of Pasteuria penetrans by 16S rRNA Gene Cloning and Sequencing

Pasteuria penetrans is an endospore-forming bacterial parasite of Meloidogyne spp. This organism is among the most promising agents for the biological control of root-knot nematodes. In order to establish the phylogenetic position of this species relative to other endospore-forming bacteria, the 16S ribosomal genes from two isolates of P. penetrans, P-20, which preferentially infects M. arenaria race 1, and P-100, which preferentially infects M. incognita and M. javanica, were PCR-amplified from a purified endospore extraction. Universal primers for the 16S rRNA gene were used to amplify DNA which was cloned, and a nucleotide sequence was obtained for 92% of the gene (1,390 base pairs) encoding the 16S rDNA from each isolate. Comparison of both isolates showed identical sequences that were compared to 16S rDNA sequences of 30 other endospore-forming bacteria obtained from GenBank. Parsimony analyses indicated that P. penetrans is a species within a clade that includes Alicyclobacillus acidocaldarius, A. cycloheptanicus, Sulfobacillus sp., Bacillus tusciae, B. schlegelii, and P. ramosa. Its closest neighbor is P. ramosa, a parasite of Daphnia spp. (water fleas). This study provided a genomic basis for the relationship of species assigned to the genus Pasteuria, and for comparison of species that are parasites of different phytopathogenic nematodes.     

Phaseolus vulgaris seed-borne endophytic community with novel bacterial species such as Rhizobium endophyticum sp. nov.

The bacterial endophytic community present in different Phaseolus vulgaris (bean) cultivars was analyzed by 16S ribosomal RNA gene sequences of cultured isolates derived from surface disinfected roots and immature seeds. Isolated endophytes from tissue-macerates belonged to over 50 species in 24 different genera and some isolates from Acinetobacter, Bacillus, Enterococcus, Nocardioides, Paracoccus, Phyllobacterium, and Sphingomonas seem to correspond to new lineages. Phytate solubilizing bacteria were identified among Acinetobacter, Bacillus and Streptomyces bean isolates, phytate is the most abundant reserve of phosphorus in bean and in other seeds. Endophytic rhizobia were not capable of forming nodules. A novel rhizobial species Rhizobium endophyticum was recognized on the basis of DNA–DNA hybridization, sequence of 16S rRNA, recA, rpoB, atpD, dnaK genes, plasmid profiles, and phenotypic characteristics. R. endophyticum is capable of solubilizing phytate, the type strain is CCGE2052 (ATCC BAA-2116; HAMBI 3153) that became fully symbiotic by acquiring the R. tropici CFN299 symbiotic plasmid.     

Rapid identification of lymnaeid snails and their infection with Fasciola gigantica in Thailand

Freshwater snails of the family Lymnaeidae are the intermediate hosts of the liver fluke Fasciola worldwide. While distinct species have been identified at the molecular level in other parts of the world such data have not been published for Thailand. In this study we collected Lymnaeidae from different localities across Thailand and analyzed their 16S rDNA sequences as a molecular signature for classification. In addition to the ubiquitous Radix rubiginosa, we have confirmed the presence of Austropeplea viridis and Radix swinhoei, for the latter of which the ribosomal rDNA sequences are reported for the first time, in North-Thailand. Based on the obtained 16S rDNA data three primer pairs were designed that allowed rapid identification of these snail species by PCR. To determine their infection status, PCR primers for F.gigantica cathepsin L were used in parallel with the snail 16S rDNA species-specific primers in multiplex PCR analyses. Western blot analysis of total snail protein with a monoclonal anti-F.gigantica cathepsin L antibody confirmed positive cathepsin L PCR results. The developed diagnostic PCR will be of use in risk assessment for transmission of fascioliasis in Thailand.     

Geographic locality greatly influences fungal endophyte communities in Cephalotaxus harringtonia

Although endophytes of conifers have been extensively studied, few data are available on Cephalotaxaceae. We examined foliar and stem endophytes of Cephalotaxus harringtonia, within its natural range in Japan and outside its natural range in France to study the effect of geography on endophyte community composition. In Japan, rapidly growing endophytes were dominant and may have masked the real diversity, in comparison to France where most endophytes were growing slowly. Analyses of ITS rDNA revealed 104 different Blast Groups among 554 isolates. Almost no overlap between endophyte assemblages of C. harringtonia from the two countries was observed. It seems that Japanese C. harringtonia trees, which should be well adapted to their native site, would host a specific, endemic endophyte community, while trees that have been introduced recently to a foreign site, in France, should have captured existing cosmopolitan and more generalist taxa. In Japan the majority of xylariaceous taxa, which dominated the communities, were unknown and, although closely related to Asian taxa, may be new to science. Dothideomycetes were more prevalent in France. Locally, urban environment, particularly in Japan, may have introduced some perturbations in the native endophyte community of C. harringtonia, with an abundance of generalist fungi such as Nigrospora and Colletotrichum.     

Biocontrol and Plant Growth Promotion Characterization of Bacillus Species Isolated from Calendula officinalis Rhizosphere

The phenotypic and genotypic diversity of the plant growth promoting Bacillus genus have been widely investigated in the rhizosphere of various agricultural crops. However, to our knowledge this is the first report on the Bacillus species isolated from the rhizosphere of Calendula officinalis. 15 % of the isolated bacteria were screened for their important antifungal activity against Fusarium oxysporum, Botrytis cinerea, Aspergillus niger, Cladosporium cucumerinium and Alternaria alternata. The bacteria identification based on 16S r-RNA and gyrase-A genes analysis, revealed strains closely related to Bacillus amyloliquefaciens, B. velezensis, B. subtilis sub sp spizezenii and Paenibacillus polymyxa species. The electro-spray mass spectrometry coupled to liquid chromatography (ESI-LC MS) analysis showed that most of the Bacillus isolates produced the three lipopeptides families. However, the P. polymyxa (18SRTS) didn’t produce any type of lipopeptides. All the tested Bacillus isolates produced cellulase but the protease activity was observed only in the B. amyloliquefaciens species (9SRTS). The Salkowsky colorimetric test showed that the screened bacteria synthesized 6–52 μg/ml of indole 3 acetic acid. These bacteria produced siderophores with more than 10 mm wide orange zones on chromazurol S. The greenhouse experiment using a naturally infested soil with Sclerotonia sclerotiorum showed that the B. amyloliquefaciens (9SRTS) had no significant (P > 0.05) effect on the pre-germination of the chickpea seeds. However, it increased the size of the chickpea plants and reduced the stem rot disease (P < 0.05).These results suggested that the Bacillus strains isolated in this work may be further used as bioinoculants to improve the production of C. officinalis and other crop systems.