五种水螅基因组DNA的RAPD多态性研究

利用RAPD技术对水螅科2属5种水螅进行了基因组DNA多态性研究.80个随机引物筛选出18个引物,共扩增出303个清晰稳定的DNA片段,分子量在0.3～3.0kb之间.以UPGMA聚类法构建树状图,阐明水螅属种的分类关系:大庆水螅Hydra daqingensis、北京水螅H.beijingensis和强壮水螅H.robusta 3种分成两组并聚在一起;不同属的漠河水螅H.mohensis和绿水螅Chlorohydra sp.聚为一支;由此2属5种水螅分为两个支系.     

基于核及叶绿体基因序列探讨中国绿水螅共生单细胞绿藻系统发生地位

研究对中国绿水螅共生绿藻的核18S rRNA基因全长序列及其叶绿体9个基因(atpA、chlB、chlN、petA、psaB、psbA、psbC、psbD及rbcL)片段序列进行了克隆和测序, 并基于18S rRNA基因序列及叶绿体9个基因序列的整合数据分别通过最大似然法(Maximum-likelihood)和贝叶斯分析(Bayesian inference)对中国绿水螅(Hydra sinensis)共生单细胞绿藻的系统发生地位进行了探讨。系统发生表明: (1)中国绿水螅共生绿藻属于共球藻纲(Trebouxiophyceae)小球藻目(Chlorellales), 但不属于其中的小球藻属(Chlorella); (2)来源于草履虫、水螅、地衣及银杏的共生绿藻均在共球藻纲支系, 而来源于蛙类和蝾螈的共生绿藻属于绿藻纲(Chlorophyceae)支系。无论在共球藻纲支系还是在绿藻纲支系, 不同来源的共生藻并没有排他性地聚为单系群而在系统树中与其他自由生活的绿藻混杂排列, 来自不同宿主的共生绿藻没有共同起源。     

中国绿水螅抗坏血酸过氧化物酶基因的克隆、抗体制备及表达分析

为探讨中国绿水螅(Hydra sinensis)抗坏血酸过氧化物酶(Ascorbate peroxidase, APX)基因的起源及功能, 研究采用RACE方法克隆了中国绿水螅APX基因的全长cDNA序列。该cDNA序列总长1357 bp, 包括5′非编码区107 bp, 3′非编码区146 bp及开放阅读框(Open reading frame, ORF) 1104 bp, 共编码367个氨基酸, 预测蛋白质分子量为40.79 kD。BLAST结果表明中国绿水螅APX蛋白同源序列绝大部分来自植物界; 通过最大似然法(Maximum-likelihood)和贝叶斯分析(Bayesian inference)进行的系统发生分析显示植物界及动物界物种的APX序列各自形成单系群。把APX基因ORF全长序列克隆到原核表达质粒pET-GST中, 重组质粒转化E. coli BL21 (DE3)菌株, IPTG诱导后成功表达重组融合蛋白GST-APX, 再使用纯化的重组蛋白免疫新西兰兔制备多克隆抗体用于APX蛋白的免疫印迹分析(Western blotting assay, WB)。在不同光照时长梯度(光强度2000 lx, 每天分别光照0、4h、8h、12h、16h、20h及24h)下培养中国绿水螅30d, 实时定量PCR (Quantitative real-time PCR, qPCR)及WB检测结果均表明光照时间较长时(每天光照12h以上)绿水螅APX表达呈现一定程度的上调。在长时间光辐射下水螅体内共生绿藻连续进行光合作用所累积的大量活性氧能够扩散到水螅细胞内, 此时水螅体内表达上调的APX可能参与清除其细胞内的活性氧。     

同脉缟蝇亚属种团间的系统发育关系初探

选取2个线粒体基因COI和16S-r RNA,2个核基因Elongation factor 1-α和28S-r RNA,初步探讨同脉缟蝇亚属种团间的系统发育关系,研究表明,翅斑的减少是趋于原始的性状;基于线粒体基因COI和16S-r RNA构建的NJ、ME、MP、ML系统树中,MP树更与形态分类的研究结果一致;而基于Elongation factor 1-α和28S-r RNA基因构建的NJ、ME、MP、ML系统树反映的系统发育关系完全相同;以同脉缟蝇亚属18种为代表构建的6个种团的系统发育关系并没有呈现出一致的规律性,不能从分子水平验证根据已有的外部形态特征划分种团的可靠性。     

线蛱蝶亚科蝶类部分类群线粒体COI基因的分子系统发生分析

以线粒体细胞色素氧化酶I（COI）基因作分子标记,对线蛱蝶亚科蝴蝶进行序列测定．序列分析的结果表明．经比对和处理后的序列总长度是645bp,其中有199个变异位点,147个简约信息位点;所编码的氨基酸序列中有18个变异位点,7个信息位点．A＋T平均含量为69．6％,G＋C平均含量为30．4％,碱基组成出现AT偏斜．以蛱蝶亚科及秀蛱蝶亚科物种为外类群,用NJ、MP及贝叶斯法重建了该亚科的系统发生树,探讨了它们主要类群间的系统发生关系．分子系统树显示,线蛱蝶亚科由以下3大支系：环蛱蝶族＋翠蛱蝶族、线蛱蝶族、丽蛱蝶族构成;其中,环蛱蝶族为单系群（NJ树也支持线蛱蝶族的单系性）;翠蛱蝶族与环蛱蝶族亲缘关系较近：丽蛱蝶族可能是该亚科较早分化出的一支．     

基于线粒体COI和16S片段序列的北部湾北部水螅水母DNA条形码分析

水螅水母类是浮游动物群落的重要组成部分,在近岸海洋生态系统物质循环和能量流动中扮演着重要角色。水螅水母类形态结构简单,但其物种的准确鉴定一直是分类工作中的难点。DNA条形码极大地促进了水螅水母物种的快速、准确鉴定。本研究扩增了北部湾北部28种水螅水母的线粒体COI和16S序列,分别为92条和116条;比较了2个基因片段的种内、种间K2P(Kimura 2-parameter)遗传距离;构建了基于这2个基因片段的系统发育邻接树(neighbor-joining phylogenetic tree);并结合矢量分析构建了Klee-diagram图。结果显示:COI序列的种内遗传距离为0.008±0.005(0–0.033),种间遗传距离为0.298±0.128(0.092–0.597);16S序列的种内遗传距离为0.006±0.010(0–0.047),种间遗传距离为0.394±0.195(0.068–0.898)。2个基因序列在所调查种类中,种内遗传差异均小于种间遗传差异,存在明显的条形码间隔(barcoding gap)。基于2个基因片段的NJ树均显示,单种所有个体都位于同一独立分枝。研究结果表明,以COI和16S作为DNA条形码均能对北部湾北部常见水螅水母类进行物种鉴定。     

凤蝶亚科(凤蝶科,鳞翅目)16S rRNA基因的分子系统发生分析

对15种凤蝶亚科蝶类线粒体16S rRNA基因部分序列进行了测定,并结合GenBank中其它相关类群的序列,采用邻接法(NJ)、最大简约法(MP)、最大似然法(ML)和贝叶斯法构建凤蝶亚科的分子系统树,探讨该亚科各类群间的系统发生关系.结果表明,燕凤蝶族构成凤蝶亚科蝶类系统树基部的一个独立分支;燕凤蝶族和裳凤蝶族为单系发生,且裳凤蝶族聚在凤蝶族内部;喙凤蝶族的单系性尚不能确定.综合分子系统学、形态学及寄主植物等相关证据,推测斑凤蝶类为凤蝶族中早期分化的一支;较之裳凤蝶类,斑凤蝶类可能更早从二者最近的共同祖先中分化出来.     

强壮水螅的特征及其与寡水螅的种间差别问题

一种广泛分布于黑龙江省的大型具柄水螅被暂定为强壮水螅Hydra robusta(IT(?) 1947)。这一中国品系与IT(?)(1947)在日本报告的新种主要特征相同,包括具有精巢乳头。只是精巢乳头不稳定。在实验室条件下第一次有性生殖时每个雄体都发生精巢乳头,但第二次有性生殖时,同一群的后代可全部失去精巢乳头。这是介于强壮水螅与寡水螅Hydra oligactis Pallas(1766)之间的中间性状。从而导致作者做出结论,认为过去其他学者所主张的,以精巢乳头的有无做为鉴别特征来区分强壮水螅和寡水螅是不可靠的。因此,本文又检验了此种水螅的体细胞染色体,证明2n=30,其中第二对染色体上有明显近中位置的次缢痕,最小染色体的长度为最大染色体长度的二分之一以上。这些可做为此种水蝗的鉴别特征。对Niiyama(1944)和Datta(1970)在寡水螅上所做的染色体研究也做了比较及讨论。     

基于16S rRNA序列的角蟾科部分属间系统关系

采用最大似然法(ML法)、最大简约法(MP法)、邻接法(NJ法)对来自角蟾科Megophryidae(Anura)8属17种及外群2种共25条400bp左右的线粒体16S rRNA序列进行系统发育关系分析。结果表明,用于分析的所有角蟾科物种形成两大支,第一支包括Megophrys,Brachytarsophrys和Atympanophrys,第二支包括Leptobrachium,Leptolalax,Scutiger,Oreolalax和Vibrissaphora。支持将角蟾科划分为两大类群,即第一支属于Megophryini族．第二支属于Leptobrachiini族。根据分子钟模型初步推测两类群问的分歧时间大致为14．2～18．7百万年前。在Megophryini族中,基因树的拓扑结构不支持Atympanophrys建立后的Megophrys为单系;而在Leptobrachiini族中,Leptolalax为一有效属,其系统发生较早。     

基于线粒体 COI 和 Cytb 基因的中国灰蝶三亚科主要类群间的系统发育关系分析

【目的】针对中国灰蝶科中亲缘关系较近的3个主要亚科［灰蝶亚科(Lycaeninae)、线灰蝶亚科(Theclinae)以及眼灰蝶亚科(Polyommatina)］,基于线粒体基因序列数据研究它们主要类群间的系统发育关系。【方法】对3亚科共53种灰蝶的线粒体 COI 和 Cytb 基因进行序列测定和序列变异分析,同时,基于最大似然法(maximum likelihood, ML)和贝叶斯法(bayesian inference, BI)等建树方法重建53种灰蝶的系统发育树。【结果】串联的2个基因共1 431 bp,其中保守位点855个,可变位点576个,简约信息位点488个;A+T的平均含量为74.5%,明显高于G+C的平均含量(25.5%)。系统树显示,灰蝶亚科以及眼灰蝶亚科均是单系发生,线灰蝶亚科则为并系群。全部灰蝶物种共分为三大支系：灰蝶亚科为第1支系;眼灰蝶亚科与线灰蝶亚科中的旖灰蝶族(Hypolycaenini)、富丽灰蝶族(Aphnaeini)分别构成单系群并互为姊妹群,它们共同构成第2支系;线灰蝶亚科中的美灰蝶族(Eumaeini)、玳灰蝶族(Deudorigini)、娆灰蝶族(Arhopalini)和线灰蝶族(Theclini)构成第3支系,其亲缘关系为：（（（线灰蝶族+娆灰蝶族）+玳灰蝶族）+美灰蝶族）。【结论】本研究涉及的3个灰蝶亚科中,灰蝶亚科是一个独立的支系,眼灰蝶亚科与线灰蝶亚科之间有较近的亲缘关系,但它们内部主要类群间的系统发育关系还需要进一步的研究。     

Three new genera and five new species of misophrioid copepods (Crustacea) from anchialine caves on Indo-West Pacific and North Atlantic Islands

Hydra lirosoma sp. nov. is a small, hermaphroditic species possessing broad holotrichous isorhiza nematocysts. The spherical embryo and cobbled embryotheca set it apart from similar species. Hydras with broad holotrichous isorhizas form a distinct cluster of species, but one which was not explicitly represented in the three genera ( Pelmatohydra, Hydra and Chlorohydra ) recognized by Schulze (1917, Archiv für Biontologie, 4(2 ): 29). Schulze failed to recognize this group because of the small number of species known at that time. The hydras that are known now fit naturally into four clusters of species termed, in this paper, the oligactis, vulgaris, viridissima, and braueri groups.     

光周期对中国水螅种群增长、无性出芽生殖及抗氧化酶活力的影响

单细胞真核绿藻在中国水螅(Hydra sinensis)内胚层皮肌细胞中共生是有较高科研价值的特殊生物学现象。水螅宿主细胞为共生藻提供CO2、氮源及矿物质,而共生藻通过光合作用可能为宿主提供碳水化合物等有机物营养,因此水螅与共生藻间代谢流是以共生藻光合作用为中心,但基于代谢流二者间的互作机制目前尚未阐明。水螅通过营养积累进行出芽生殖,从母体脱落的芽体数量间接反映水螅营养积累的相对量。而光暴露时长能影响共生绿藻光合作用,如果共生藻的确能向水螅细胞转移光合作用产物,那光暴露时长应该能间接影响水螅的营养积累、从而进一步影响水螅无性出芽生殖。为证实该假说,本研究应用种群累积培养法,观察了光周期对中国水螅种群增长、无性出芽生殖及抗氧化酶(SOD和CAT)活力的影响。结果显示,光周期对中国水螅种群增长具有明显的影响。培养15 d后,所有实验组水螅的种群密度均为正增长,其中8L∶16D(在一个24h周期内光暴露8 h、黑暗16 h)实验组种群密度最大、而0L∶24D(持续黑暗)实验组种群密度最小。另外,随着光暴露时长的增加,中国水螅SOD及CAT活力整体均呈下降趋势。结果表明,从光周期对中国水螅无性出芽生殖及两种抗氧化酶活力的影响来看,中国水螅对光周期的生理学响应较为敏感,这个现象可能源于共生绿藻能通过向宿主细胞转移光合作用产物的方式为水螅提供营养补充。     

Taxonomy of the European Hydra (Gnidaria: Hydrozoa): a re-examination of its history with emphasis on the species H. vulgaris Pallas, H. attenuata Pallas and H. circumcincta Schulze

The name Hydra attenuata Pallas is currently applied to the wrong animal. The common brown polyp, which is widely called H. attenuata, was described by Pallas (1766) as Hydra vulgaris. The name H. attenuata Pallas originally referred to an uncommon pale polyp, currently known as H. circumcincta Schulze. The history of this confusion is analysed here. The taxonomy of hydra was in disarray during the 18th and 19th centuries, and was clarified in 1917 with the monograph of Schulze. But Schulze misapplied the name for the common hydra, H. vulgaris, to an unusual form and thus was led to assign the name of a rare hydra, H. attenuata, to the common type. Schulze redescribed the rare, pale hydra that Pallas had named H. attenuata as H. circumcincta. The correct name of the common European brown, stalkless hydra is thus H. vulgaris Pallas, 1766. The name H. attenuata has priority for the uncommon pale hydra, but because of disuse of this application of the name, the pale hydra should be recognized by the current, generally accepted binominal H. circumcincta Schulze, 1914.     

普通水螅(无鞘螅目,水螅科)中国一新纪录种

对采自中国广东省珠江流域(114°E,23°N)的一种淡水水螅进行连续两年的培养与观察,并扩增了其线粒体细胞色素氧化酶亚基Ⅰ(COⅠ)的基因序列.通过形态学分析及CO Ⅰ基因序列的鉴定确定其为普通水螅Hydra vulgaris Pallas,1766,为中国一新纪录种.     

Taxonomy of the European Hydra (Cnidaria: Hydrozoa): a re-examination of its history with emphasis on the species H. vulgaris Pallas,H. attenuata Pallas and H. circumcincta Schulze

The name Hydra attenuata Pallas is currently applied to the wrong animal. The common brown polyp, which is widely called H. attenuata, was described by Pallas (1766) as Hydra vulgaris. The name H. attenuata Pallas originally referred to an uncommon pale polyp, currently known as H. circumcincta Schulze. The history of this confusion is analysed here. The taxonomy of hydra was in disarray during the 18th and 19th centuries, and was clarified in 1917 with the monograph of Schulze. But Schulze misapplied the name for the common hydra, H. vulgaris, to an unusual form and thus was led to assign the name of a rare hydra, H. attenuata, to the common type. Schulze redescribed the rare, pale hydra that Pallas had named H. attenuata as H. circumcincta. The correct name of the common European brown, stalkless hydra is thus H. vulgaris Pallas, 1766. The name H. attenuata has priority for the uncommon pale hydra, but because of disuse of this application of the name, the pale hydra should be recognized by the current, generally accepted binominal H. circumcincta Schulze, 1914.     

REEXAMINATION OF PHYLOGENETIC RELATIONSHIPS WITHIN THE COLONIAL VOLVOCALES (CHLOROPHYTA): AN ANALYSIS OF atpB AND rbcL GENE SEQUENCES

The chloroplast-encoded atp B gene was sequenced from 33 strains representing 28 species of the colonial Volvocales (the Volvocaceae and its relatives) to reexamine phylogenetic relationships as previously deduced by morphological data and rbc L gene sequence data.1128 base pairs in the coding regions of the atp B gene were analyzed by MP, NJ, and ML analyses. Although supported with relatively low bootstrap values (75% and 65% in the NJ and ML analyses, respectively), three anisogamous/oogamous volvocacean genera— Eudorina, Pleodorina, and Volvox, excluding the section Volvox (= Euvolvox, illegitimate name), constituted a large monophyletic group (Eudorina group). Outside the Eudorina group, a robust lineage composed of three species of Volvox sect. Volvox was resolved as in the rbc L gene trees, rejecting the hypothesis of the previous cladistic analysis based on morphological data that the genus Volvox is monophyletic. In addition, the NJ and ML trees suggested that Eudorina is a nonmonophyletic genus as inferred from the morphological data and rbc L gene sequences. Although phylogenetic status of the genus Gonium is ambiguous in the rbc L gene trees and the paraphyly of this genus is resolved in the cladistic analysis based on morphological data, the atp B gene sequence data suggest monophyly of Gonium with relatively low bootstrap values (56–61%) in the NJ and ML trees. On the basis of the combined sequence data (2256 base pairs) from atp B and rbc L genes, Gonium was resolved as a robust monophyletic genus in the NJ and ML trees (with 68–86% bootstrap values), and Eudorina elegans Ehrenberg represented a paraphyletic species positioned most basally within the Eudorina group. However, phylogenetic status and relationships of the families of the colonial Volvocales were still almost ambiguous even in the combined analysis.