贡嘎蝠蛾幼虫肠道细菌多样性分析

[目的]对实验室养殖条件下的重要经济昆虫冬虫夏草寄主-贡嘎蝠蛾(Hepialus gonggaensis,Hg)幼虫肠道微生物群落的多样性进行了研究.[方法]采用常规分离培养与分子鉴定的方法和基于16S rRNA作为分子标记的变性梯度凝胶电泳(denaturing gradient gel electrophoresis,DGGE)的方法.[结果]用常规分离与分子鉴定方法获得8个属的细菌类群,其中肠杆菌属(Enterobacter)是优势菌群,肉食杆菌属(Carnobacterium)是次优势菌群.对通过DGGE方法得到的11条16S rRNA优势条带序列进行了比对和系统进化树分析,结果表明肉食杆菌属(Carnobacterium)的丰度最高,是肠道细菌中主要的优势菌群,芽孢杆菌属(Bacillus)是次优势菌群.DGGE图谱还显示Hg幼虫不同虫龄肠道细菌菌群的结构存在差异,推测可能与其发育生理状态的差异有关系.[结论]结合常规分离法与DGGE法能够更有效的分析肠道微生物的多样性,获得更多更全面的微生物多样性信息.     

饲喂肉杆菌Hg4-03对贡嘎蝠蛾幼虫肠菌生物多样性的影响

【目的】研究贡嘎蝠蛾幼虫肠道优势菌肉杆菌(Carnobacterium sp.)Hg4-03作为食物添加剂对实验室饲养的4龄贡嘎蝠蛾幼虫肠道菌群的影响。【方法】采用16S rDNA序列与PCR/DGGE(Denaturing gradient gel electrophoresis)分析技术相结合的方法,健康幼虫被随机分为处理组1、处理组2和对照组,两组处理组分别饲喂添加不同浓度肉杆菌Hg4-03的天然饲料,对照组只饲喂天然饲料。14 d和28 d后每组随机解剖6条幼虫,收集肠道样品,经细菌通用引物扩增细菌16S rDNA,DGGE分离并进行细菌多样性图谱分析。【结果】饲喂肉杆菌Hg4-03后幼虫肠道菌群的多样性指数呈上升趋势;处理组幼虫肠道中肉杆菌Hg4-03含量增加,且处理组中枯草芽孢杆菌(Bacillus subtilis)的量也明显增加。【结论】将肉杆菌Hg4-03作为益生菌饲喂贡嘎蝠蛾幼虫有助于维持幼虫肠道菌群多样性平衡,这为贡嘎蝠蛾人工或半人工养殖提供了一定的参考价值。     

亚成体大熊猫肠道真菌多样性

【目的】分析5只亚成体大熊猫肠道真菌的多样性。【方法】采用基于ITS基因的RFLP(Restriction Fragment Length Polymorphism)方法,对肠道真菌总DNA进行ITS-RFLP分析,构建ITS克隆文库,然后用HhaI、HaeIII进行酶切指纹图谱分析,测序并绘制系统进化树。【结果】研究表明,5只亚成体大熊猫肠道真菌主要由Ascomycota(平均占46.24%)、Basidiomycota(平均占15.79%)2个门和一些未分类(平均占29.14%)、未培养(平均占8.83%)的真菌。其中,Ascomycota主要以Saccharomycetes(平均占63.74%)和Dothideomycetes(平均占35.91%)2个纲为主;Basidiomycota主要以Tremellomycetes(平均占65.80%)和Microbotryomycetes(平均占33.15%)2个纲为主。而这4个纲分别则主要以Candida、Debaryomyces;Pleosporales、Myriangium;Cystofilobasidium、Trichosporon;Leucosporidium、Leucosporidiella八个菌属为主,各样品中所占比例不等。【结论】亚成体大熊猫肠道内存在一定比例的真菌菌群,且ITS-RFLP技术能够很好地对其多样性进行分析。真菌的发现扩大了我们对大熊猫肠道微生物结构的了解,同时也有助于我们进一步研究真菌能否帮助大熊猫消化高纤维素食物。     

基于DNA复合条形码技术的蝗虫肠道共生真菌多样性研究

利用DNA复合条形码技术,研究了11个样本的蝗虫肠道共生真菌的多样性。结果显示:ITS在所研究的物种中鉴定了5门16纲29目40属2786 OTU真菌。肠道真菌群落组成分析结果显示:所有物种肠道真菌类群中含量最高的是木耳菌目和银耳目,其中斑翅蝗科的真菌类群多样性相对最高,斑腿蝗科的真菌类群多样性相对最低,表明各蝗虫肠道之间存在着明显的菌群多样性变化。α多样性分析结果显示:斑翅蝗科的共生真菌群落丰富度和多样性最高,斑腿蝗科的则最低。β多样性分析结果显示:(1)同科的各个种的肠道真菌群落结构差异性较小,不同科的种的肠道真菌群落结构差异性较大;(2)剑角蝗科的肠道真菌群落结构与其他物种的相似性均相对较低,而且在两个不同取样地得到的中华剑角蝗的真菌群落结构相似性也相对较低。聚类分析结果显示:(1)同科的蝗虫肠道真菌首先聚到一起,且群落相似性也相对较高;(2)布勒掷孢酵母属、内疣衣属和外瓶霉属3个属在蝗虫肠道真菌中是优势菌属。     

蝙蝠蛾幼虫肠道真菌复合体中的多菌种与中国被毛孢分生孢子联合侵染蝙蝠蛾幼虫提高侵染效能

应用真菌特异性引物PCR测序、克隆测序和SNP质谱基因分型法,鉴定2株蝙蝠蛾幼虫活体肠道的真菌分离株(CH1和CH2)中的多种菌物。应用这2株分离株与中国被毛孢分生孢子联合侵染蝙蝠蛾幼虫,观察其协同侵染活性。结果表明这2株分离株呈现中国被毛孢的体外培养生长和显微形态特征。通用引物ITS4/5和蝙蝠蛾拟青霉特异性引物Pp4/5扩增子测序检出蝙蝠蛾拟青霉和中国被毛孢ITS序列。扩增子克隆-测序和SNP基因分型法证实多种转换和颠换点突变基因型在2株分离株中共存。反复固体、液体培养证实蝙蝠蛾拟青霉和中国被毛孢ITS序列共存,并非真菌间DNA片段漂移。应用子囊孢子或中国被毛孢侵染4~5龄蝙蝠蛾幼虫,幼虫染菌率为1.37%~3.52%,幼虫变僵时间为35~50 d。应用2株分离株与中国被毛孢分生孢子联合侵染,幼虫变僵时间为5~8 d,染菌率达55.2%(P0.001),侵染效能提高15~39倍。蝙蝠蛾拟青霉和多种点突变基因型冬虫夏草菌(包括中国被毛孢)在蝙蝠蛾幼虫肠道以天然真菌复合体形式共存;多种菌物组成的侵染源联合侵染蝙蝠蛾幼虫大幅度提高侵染效能,呈现多菌协同侵染的共生关系。     

中国丝孢酵母属的几个新种和新记录

作者从中国的北京、湖北等地的鸟粪,霉变柿子以及酒药中分离到了三株未描述的丝孢酵母菌。本文描述了这三个新种:板仓丝孢酵母(Trichosporon bancangense),北京丝孢酵母(Tr.beijingense)和中国丝孢酵母(Tr.sinense)并讨论了它们与属中近似种的差别。本文还发现了丝孢酵母属的4个新记录:皮刺丝孢酵母(Tr.aculeatum),埃利丝孢酵母(Tr.eriense),斐氏丝孢酵母(Tr.figueriae)和蜜二糖丝孢酵母(Tr.melibiosaceam)。     

彩虹锹甲不同发育阶段肠道真菌群落特征研究北大核心

【目的】肠道微生物中的真菌群落在宿主生命活动中具有多种功能。锹甲是常见的腐食性甲虫,但目前对其肠道真菌群落的研究较少,本研究分析彩虹锹甲(Phalacrognathus muelleri)不同发育阶段的肠道真菌群落结构和多样性,试图阐明彩虹锹甲在不同发育阶段中肠道真菌群落的特征。【方法】本研究通过高通量测序(Illumina MiSeq)技术对彩虹锹甲不同发育阶段(包括新生幼虫、成熟幼虫、成虫)之间肠道真菌群落结构进行比较研究,分析其α多样性、β多样性和功能预测。【结果】彩虹锹甲肠道优势真菌类群为假丝酵母属(Candida)、Phialocephala、青霉属(Penicillium)、烧瓶状霉属(Lecythophora)。肠道真菌群落组成与多样性在幼虫期和成虫期存在显著差异,成虫与幼虫食性差别可能是导致肠道真菌群落组成和多样性差异的重要原因。功能预测结果显示,幼虫肠道中含有更高的内共生菌多样性与相对丰度,说明幼虫可能更加依赖其肠道有益真菌来获得充分的养分。β零模型结果显示,成虫肠道对其真菌群落具有更强的过滤作用,从而选择特定的肠道真菌类群,导致成虫肠道真菌群落共现网络具有更高的稳定性,增强成虫对环境波动的适应能力。【结论】本研究发现彩虹锹甲不同发育阶段参与食物降解的功能真菌类型不同,幼虫可能对肠道真菌的依赖性更强,而成虫肠道较强的选择作用有助于选择特定真菌类群和保持肠道真菌群落稳定。本研究有助于更好理解锹甲肠道真菌群落的多样性,为开展腐栖甲虫作为生态系统重要功能群的利用与保护提供更多理论参考。     

饲喂四环素和链霉素对贡嘎蝠蛾幼虫生长和肠道消化酶的影响

以抗生素(四环素和链霉素)处理的食物饲喂贡嘎蝠蛾Hepjalus gonggaensis Fu & Huang,sd.nov.4龄幼虫1个月后,肠道主要消化酶的种类和酶活都发生了显著变化。经测定知,淀粉酶和蛋白酶是4龄幼虫主要的消化酶,其次为海藻糖酶、麦芽糖酶和纤维素酶。经抗生素处理的食物饲喂后,与正常对照相比,抗生素处理的幼虫体重增长百分比显著降低(P<0.01),所测的消化酶酶活比对照也显著降低(P<0.01)。另外,肠道内原有的半纤维素酶和纤维素酶在抗生素处理后没有检测出酶活。据此认为,抗生素可能对幼虫生长有毒害作用。其原因可能是抗生素长期使用导致肠道菌群紊乱,消化生理发生改变,从而导致一些消化酶活性下降甚至完全失去活性。     

核辐射污染区真菌的分布及多样性研究

为揭示中国辐射污染区真菌多样性,了解辐射污染对辐射区土壤中真菌群落分布的影响。以中国辐射污染区某污染源为圆心,在其半径50 km范围内采集各类样品54份,依据其辐射剂量合并为高、中、低三组9份样品,采用不同处理方法及多种培养基对辐射区内真菌进行了分离筛选。共分离出真菌209株,通过形态学观察和鉴定,确定其分属于交链孢霉(Alternaria)、离蠕孢属(Bipolaris)、茎点霉属(Phoma)、Westerdykella、短梗霉属(Aureobasidium)、曲霉属(Aspergillus)、青霉属(Penicillium)、根霉属(Rhizopus)、Kernia、毛壳属(Chaetomium)、葡萄穗霉属(Stachybotrys)、座孢霉属(Myrothecium)、镰孢属(Fusarium)、小克银汉霉属(Cunninghamella)、红酵母属(Rhodotorula)、隐球酵母属(Cryptococcus),共计16个属,其中曲霉属、隐球酵母属、青霉属和镰孢霉属菌株为主要菌群,分别占分离株的22.5%、19.1%、17.2%和11.0%。同时发现,辐射污染区真菌的群落丰富度及多样性明显受辐射污染程度的影响,各类菌株的分布呈现一定的分布规律。本研究首次分析了中国辐射污染区真菌的分布和多样性,并收集了大量辐射污染区真菌资源,为进一步研究该区域真菌耐辐射特性及探讨真菌耐辐射机理提供参考。     

胃病患者胃黏膜真菌感染的检测

通过检测胃炎和胃溃疡、胃癌患者胃黏膜寄居的真菌,了解胃黏膜真菌的菌种多样性及其与胃溃疡的关系。采集消化科就诊患者胃镜钳取的胃黏膜标本63例,采用念珠菌显色培养基(CHROMagar)进行真菌分离培养鉴定。用玉米吐温80培养基进行真菌孢子形态学检查,用ITS(internal transcribed spacer region)序列限制性片段长度多态性(Restriction fragment length polymorphism,RFLP)检测分析真菌菌种多样性。分离培养真菌32(32/63,50.8%)株,经ITS序列RFLP法鉴定为白假丝酵母菌31株,光滑假丝酵母菌1株。真菌阳性率与病理诊断成正相关(r=0.263,P=0.027),与性别、年龄、吸烟、饮酒、学历的相关性均无统计学意义(P0.05)。结果表明,胃黏膜寄居的真菌存在多样性,且真菌阳性率与病理损害程度存在相关性。     

Fungi associated with hair roots of Rhododendron lochiae (Ericaceae) in an Australian tropical cloud forest revealed by culturing and culture-independent molecular methods

The culturable fungal assemblage associated with hair roots of Rhododendron lochiae (Ericaceae) from a tropical cloud forest in Queensland, Australia was investigated using rDNA internal transcribed spacer (ITS) restriction fragment length polymorphisms (RFLPs) and sequence analysis, and the abilities of the fungi to form ericoid mycorrhizas were tested. DNA was further extracted directly from hair roots and partial fungal ITS products compared with those from the cultured isolate assemblage using denaturing gradient gel electrophoresis (DGGE). A range of ericoid mycorrhizal and non-mycorrhizal fungi was identified using both approaches, with ericoid mycorrhizal fungi found to be taxonomically similar to those associated with Ericaceae in temperate habitats worldwide. Both approaches identified several unique fungi and, although most of the abundant RFLP types identified in the cultured fungal assemblage were also present in DGGE profiles of DNA extracted directly from roots, one the most commonly isolated RFLP types, a putative Xylariaceae taxon, was absent. The data suggest that a combination of culturing and culture-independent approaches may be more efficacious than either method individually.     

Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated Soils

Bioremediation is a cost-effective and sustainable approach for treating polluted soils, but our ability to improve on current bioremediation strategies depends on our ability to isolate microorganisms from these soils. Although culturing is widely used in bioremediation research and applications, it is unknown whether the composition of cultured isolates closely mirrors the indigenous microbial community from contaminated soils. To assess this, we paired culture-independent (454-pyrosequencing of total soil DNA) with culture-dependent (isolation using seven different growth media) techniques to analyse the bacterial and fungal communities from hydrocarbon-contaminated soils. Although bacterial and fungal rarefaction curves were saturated for both methods, only 2.4% and 8.2% of the bacterial and fungal OTUs, respectively, were shared between datasets. Isolated taxa increased the total recovered species richness by only 2% for bacteria and 5% for fungi. Interestingly, none of the bacteria that we isolated were representative of the major bacterial OTUs recovered by 454-pyrosequencing. Isolation of fungi was moderately more effective at capturing the dominant OTUs observed by culture-independent analysis, as 3 of 31 cultured fungal strains ranked among the 20 most abundant fungal OTUs in the 454-pyrosequencing dataset. This study is one of the most comprehensive comparisons of microbial communities from hydrocarbon-contaminated soils using both isolation and high-throughput sequencing methods.     

Analysis of the Intestinal Microflora in Hepialus gonggaensis Larvae Using 16S rRNA Sequences

Gut microbial diversity provides insight into the basic function of a gut microbial ecosystem. In this study, restriction fragment length polymorphism 16S rRNA sequences was used to detect the intestinal microbial diversity of Hepialus gonggaensis larvae. The total DNA of microorganisms was extracted from the intestinal contents and 16S rRNA was amplified. A nearly full-length of 16S rRNA sequence library was constructed. The fingerprints of the microorganisms were analyzed by isolating plasmid and then digesting them with EcoRI, MspI, and HaeIII enzymes, respectively. The library established includes 35 restriction endonuclease types and a phylogenetic tree depicted the linkage of the isolated microbial from the guts of H. gonggaensis larvae. The dominant bacteria in the guts of H. gonggaensis larvae belong to Rahnella sp and Carnobacterium sp and accounted for 45.58% and 30.88% of the total 16S rRNA clones library, respectively. The result showed that bacteria diversity in the guts of H. gonggaensis larvae had some differences from those isolated from normal environment.     

湛江红树林滩涂可培养真菌种群多样性分析

【目的】明确湛江地区红树林滩涂海洋真菌的种类及其分布,为海洋真菌的开发利用研究奠定基础。【方法】运用稀释平板法从湛江市高桥及特呈岛红树林滩涂不同的潮位带(低、中、高)和不同树种(白骨壤、桐花树、木榄、红海榄)采集淤泥样品550份,采用真菌形态学和ITS序列分析技术进行多样性研究【。结果】分离获得海洋真菌274株,共鉴定出19属39种真菌,以曲霉属Aspergillus、青霉属Penicillium和木霉属Trichoderma真菌分离频率高,为湛江红树林滩涂优势真菌种类,尤其在中潮位带真菌种类最多。此外,分离获得真菌Talaromyces helicus,为中国新记录种。【结论】湛江红树林滩涂海洋真菌的种类十分丰富,具有潜在的开发和利用前景。     

凉山州龙肘山锈红杜鹃与薄叶马银花根部真菌分子检测

【目的】为检验直接分子检测法用于揭示杜鹃花属(Rhododendron)植物根部真菌(Root-associated fungi,RAF)组成的有效性。【方法】采用不依赖于培养的分子检测技术直接从锈红杜鹃(R.bureavii)与薄叶马银花(R.leptothrium)的发根(Hair root)提取DNA,用真菌特异性引物扩增r DNA-ITS区、经克隆后测序,对获得的ITS序列进行分析;通过收集NCBI中与本研究的RAF相似性97%以上的所有序列对应的真菌来源(土壤或根系的身份)数据,分析真菌的生态学特性,并用FUNGuild软件提供的方法划分真菌的生态类型。【结果】从两种杜鹃花根部共检测到15种真菌,其中担子菌门(Basdiomycota)真菌3种,子囊菌门(Ascomycota)真菌12种。柔膜菌目(Helotiales)真菌在两种杜鹃花RAF群落中占据优势,并且在两种杜鹃花根系中均检测到该类真菌。此外,两种杜鹃花根部有多种生态类型的RAF共存,包括曾被频繁报道的杜鹃花类菌根菌Oidiodendron sp.和Rhizoscyphus sp.、内生真菌Phialocephala fortinii、共生一致病过渡型真菌Pezoloma ericae、外生菌根共生菌Meliniomyces sp.,以及腐生型真菌Myceana sp.、Lachnum virgineum、Herpotrichia sp.。【结论】直接分子检测法从两种杜鹃花属植物根部检测到的真菌谱系多样性较高、生态类型复杂,这一方法能较为全面地反映杜鹃花属植物RAF多样性。     

New Lineages of Elaphocordyceps Harboring in Lichen Thalli

All species of Elaphocordyceps parasitize the fungal genus Elaphomyces, except for three species growing on scarabid beetle larvae or cicada nymphs. During our study on the diversity of culturable endolichenic fungi, some Elaphocordyceps species are found widely harboring in lichen thalli. A total of 64 fungal strains belonging to Elaphocordyceps were isolated from 42 lichen samples respectively collected from 5 provinces of China and the Antarctic. Phylogenetic analysis based on ITS nrDNA shows that these endolichenic fungi are possibly heterospecific. The endophytic fungi of plant often provide benefits to their hosts. However, the endolichenic fungi may be parasites or nutrient competitors of the mycobiont, because they have to obtain nutrient components from mycobionts or photobionts. Our study partly proves this hypothesis, since most known species of Elaphocordyceps are parasites of fungi.     

基于rDNA ITS序列的油茶叶片内生真菌多样性研究(英文)

油茶是我国热带和亚热带地区广泛栽培的一类重要的经济树种,其种子可生产优质食用油(茶油)。为了比较全面地了解油茶的内生真菌多样性,采用基于rDNA ITS的免培养法从油茶叶片中提取了总DNA,再从总DNA样本中直接扩增了内生真菌核糖体RNA基因内转录间隔区序列(ITS),进而构建了ITS克隆文库。共计从50个克隆子中获得了22种不同的克隆序列,其中3个为嵌合体,7个归属为植物,其余克隆序列根据序列相似性和系统发育分析归为12个不同的分类操作单元(OTUs),全部为子囊菌,分属于4纲4目,其中Aspergillus属2种,Mycosphaerellaceae科1种,Sordariales目4种,Helotiales目5种,Aspergillus属真菌是优势菌。结果表明油茶叶片内生真菌的种类分布较广。     

Real-Time PCR Assays for Monitoring Anaerobic Fungal Biomass and Population Size in the Rumen

The relationship between copy numbers of internal transcribed spacer 1 (ITS1) and biomass or zoospore count of anaerobic fungi was studied to develop a quantitative real-time PCR-based monitoring method for fungal biomass or population in the rumen. Nine fungal strains were used to determine the relationship between ITS1 copy number and fungal biomass. Rumen fluid from three sheep and a cow were used to determine the relationship between ITS1 copy number and fungal population. ITS1 copy number was determined by real-time PCR with a specific primer set for anaerobic fungi. Freeze-dried fungal cells were weighed for fungal biomass. Zoospore counts were determined by the roll-tube method. A positive correlation was observed between both ITS1 copy number and dry weight and ITS1 copy number and zoospore counts, suggesting that the use of ITS1 copy numbers is effective for estimating fungal biomass and population density. On the basis of ITS1 copy numbers, fluctuations in the fungal population in sheep rumen showed that although the values varied among individual animals, the fungal population tended to decrease after feeding. In the present study, a culture-independent method was established that will provide a powerful tool for understanding the ecology of anaerobic fungi in the rumen.     

三种杓兰根相关真菌多样性和生态功能

【背景】除了菌根真菌(Orchid mycorrhizal fungi,OrMF)外,兰科植物根中还有其它内生真菌,称为根相关真菌(Root-associated fungi,RAF)。【目的】采用分离培养的方法获得同一栖息地针叶林和灌木林两种不同生境西藏杓兰、黄花杓兰和无苞杓兰的RAF菌株,研究其真菌谱系、多样性和生态功能结构。【方法】从杓兰根碎屑中分离RAF,通过总DNA提取、PCR扩增及测序得到ITS(Internaltranscribedspacer)序列;进行系统发育和多样性分析,并通过NCBI数据库比对得到相似性最高序列的注释信息来分析RAF生态学特性。【结果】共分离得到278株RAF,25种OTU类型,包括23个子囊菌门OTU,2个毛霉菌门OTU。RAF物种丰富度分析发现西藏杓兰的较黄花杓兰高,不同生境没有显著差异;不同杓兰物种较不同生境的RAF群落分化程度高。生态功能分析显示25个OTU包括共生型、腐生型和致病型3种营养型,以及外生菌根菌群、植物病原菌群、内生真菌群、动物病原菌群、真菌寄生菌群、杜鹃花类菌根群、未定义的腐生菌群和不确定型8种共位群。【结论】阐明不同生境采集的不同杓兰中RAF的分布特点和生态功能,为未来研究RAF与杓兰属植物的共生关系奠定基础。