国产粟米草属的分类研究

本文根据国产粟米草属Mollugo L.8种植物的外部形态的5个分类学特征,尤其是种子形态结构的演化特征,认为该属植物种中实际存在着两个自然类群,特将该属中种子具有假种皮和种阜的、即星粟草属Glinus L.在我国予以恢复,它是一个较粟米草属原始的自然类群。     

叉蕨科是一个多系类群: 基于叶绿体rbcL和atpB基因的分析

叉蕨科植物为泛热带分布, 全世界约有20余属, 中国产8属. 本研究以属为单位进行类群取样, 利用来自叶绿体基因组的两个基因(rbcL和atpB)对叉蕨科中国产全部8属植物进行系统发育重建, 用以探讨叉蕨科及其科下系统发育关系. 研究结果显示, 传统(秦仁昌系统)的叉蕨科是一个多系类群, 肋毛蕨属Ctenitis, 轴鳞蕨属Dryopsis和节毛蕨属Lastreopsis应该从叉蕨科分出而作为鳞毛蕨科成员, 黄腺羽蕨属Pleocnemia也暂时置于鳞毛蕨科. 轴脉蕨属Ctenitopsis, 沙皮蕨属Hemigramma, 牙蕨属Pteridrys, 地耳蕨属Quercifilix和叉蕨属Tectaria在系统发育树上聚为一支, 形成一个得到强烈支持的单系类群. 在rbcL单基因分析中, 爬树蕨属Arthropteris同上述单系类群聚在一起. 本研究基于叶绿体基因的证据对叉蕨科进行了重新定义.     

中国黄耆属植物旱生类群的区系特点和生态地理分布

根据种的现代地理分布、分布区类型、地理宗的替代关系和生态２特点对中国黄耆属植物的旱生类群进行了研究。结果表明,国产该类群植物９３种,可划分为８个分布区类型和１４个亚型。依其生态理分布规律,又可将这些类群划分为４个生态系列或称为生态区,即帕米尔－昆仑－羌唐生态区,天山－阿尔泰生态区、伊犁－塔城谷地生态区和蒙新荒漠东部生态区。分析认为：黄耆属植物旱生类群的区系发生在中亚西部,中国类群的发生具有显著的中     

关于中药现代化中的物种鉴定问题——基于枸杞分类和生产问题的讨论

在中药开发利用中,原植物的正确鉴定和命名是首先要解决的问题。以枸杞为例,考证了在古籍中曾发生过的枸杞属(Lycium)与白棘(酸枣Zizyphus jujuba Mill.var.spinose(Bunge)Hu)和沙棘(Hippophae rhamnoides L.)、藏药中枸杞与忍冬(Lonicera myrtillus Hook.f.et Thoms.,L.microphylla Willd.ex Roem.et Schult.)和白刺（Nitraria tangutorum Bobr.)之间的混淆情况。通过对中国枸杞属种质资源的种类和分布介绍,详细比较了我国传统医药广泛利用的两种枸杞——枸杞(L.chinense Mill)阳宁夏枸杞(L．barbarum L.)在形态上的区分,澄清了长期以来在分类上的混乱。通过对枸杞属在茄科植物中系统关系的综合分析,认为枸杞属同富含托品生物碱(tropane alkaloids)的天仙子类和曼陀罗类的关系甚远,它们分别隶属不同的族。对Harsh(1989)报道印度产的“L.barbarum”富含托品生物碱的原植物提出置疑。根据国产枸杞属植物的不同生物学特性,提出用现代技术加速选育优质及抗病虫害品种的紧迫性。文章结合枸杞子（Gouqizi,Fructus Lycii)的生产情况,提出建立和发展传统药材规范化生产基地的必要性。     

《中国植物志》(英文版)竹亚科青篱竹属和新小竹属的修订

基于最近的分子系统学研究、近期发表的新类群以及国际植物命名法规的相关条款,对《中国植物志》 （英文版）竹亚科的两个属进行了修订。中国是否有青篱竹属 (Arundinaria)的分布一直是个争论不休的问题。分子系统学不支持广义青篱竹属,因此原置于青篱竹属下的4个种应恢复到巴山木竹属 (Bashania) 中。包括近期发表的新类群在内,巴山木竹属在中国共有10种。西藏新小竹 (Neomicrocalamus microphyllus)是一个没有合格发表的裸名,其正确名称应为新小竹 (N.prainii),而云南新小竹（N.yunnanensis）则可能是梨籐竹属的成员。     

绣球属(Hydrangea L.)植物分子系统学及系统发育分析

该研究基于对绣球属(Hydrangea L.)的大尺度取样,选取国内外61种绣球属和近缘属植物,分别基于核基因片段(ITS)和叶绿体基因片段(rbcL,trnL-F,atpB)重建了绣球属及其近缘种属的系统发育关系。结果表明:(1)核基因与叶绿体基因树之间在树形上没有明显的冲突,进而基于核基因和叶绿体基因联合数据重建了绣球属及其近缘种属的系统发育关系。(2)基于联合数据构建的系统树确认了2个大分支,并得到了果实顶端截平与否这一形态学证据的强力支持;每个大分枝又分为4个类群,共确定了8个类群。部分类群也得到了广义宏观形态性状的支持,如第1类群得到了叶形、花粉以及种子形态的支持。因此,该系统发育关系的重建对于全面理解绣球属及其近缘种属的演化关系具有重要的启发。     

新一代植物志的起点——读《中国维管植物科属词典》《中国维管植物科属志》的几点思考

<正>中国是全球生物多样性大国,也是世界上植物种类最多的国家之一。据《中国生物物种名录》(2022版)(http://www.sp2000.org.cn/Co LChina)记载,中国产高等植物物种总计483科4,275属38,287种及7,506个种下类群,其中维管植物占绝对优势,共有323科3,643属35,179种及7,258个种下类群,且仍以平均每年220个新分类群及32个国家级分布新记录的速度持续增长(Du et al,2020)。     

鹅绒藤属及其近缘属的化学分类——兼论Vincetoxicum的恢复问题

本文讨论了鹅绒藤属及其近缘属的分类问题。根据这类植物所含的C_(21)甾体甙元结构类型的分类,生源合成途径假说,以及C_(21)甾休甙元的分布,结合形态学的比较分析和其它证据,认为Vincetoxicum是一个脱胎于Cynanchum,但又较之进化的自然类群,应恢复其属级地位。列举了国产白前属全部分类群的正确学名,其中包括15个新组合,1个改级新组合和1个新改级。     

湖北省维管植物分布新记录

报道了湖北省神农架大九湖国家湿地公园内发现的湖北省维管植物分布的新记录类群,包括1个新记录属大爪草属（Spergula Linnaeus）,含1个新记录种大爪草(Spergula arvensis Linnaeus);1种新记录的蕨类植物宪需耳蕨(Polystichum kungianum H. He & Li Bing Zhang);1个新记录变种,倒钩琉璃草[Cynoglossum wallichii var. glochidiatum (Wallich ex Bentham) Kazmi]。这些新分布类群丰富了湖北省的植物多样性,为本地区的植物区系研究提供了新资料。     

中国千斤拔属植物的初步研究

本文叙述了千斤拔属名的拉丁学名的变换和研究情况,并研究该属植物国产种的分类、地理分布及其特点。进而对该属植物的习性和苞片、花序、花和叶等诸器官演化趋势作初步探讨,并对该属6个类群之间可能的演化关系、属的起源、分布中心和迁移路线等问题提出初设想。     

Africa or Asia, which is the evolutionary origin of human schistosomes?]

The origin and the evolution of Schistosomatidae species, due to their medical importance (responsible of the second most important human parasitosis after malaria), arouse a great interest. A combination of phylogenetic studies using several molecular markers has provided support for the traditional grouping and evolutionary inferences derived from morphological and biological data. The genus Schistosoma, which comprises all species parasitizing Man, is generally split into four evolutionary lineages (mansoni, haematobium, indicum and japonicum lineages). The group of African schistosomes (including mansoni and haematobium lineages) appears very divergent from the japonicum lineage. Recent phylogenetic studies using partial 28S rDNA sequencing and including Orientobilharzia turkestanicum from Iran, an Asian parasite of livestock, found, unexpectedly, that this species nested among Schistosoma species, thus rendering the latter paraphyletic, and suggested an Asian origin for the Schistosoma genus. The present work re-examines the question of the geographical origin of human schistosomes by analysing a new genomic marker (ITS2) as well as by including the use of O. turkestanicum originating from northeastern China. Our results are in agreement with previous work using 28S, in demonstrating that Schistosoma is not monophyletic. However, O. turkestanicum, whatever the method of analysis used (distance or parsimony), was grouped with members of the japonicum group to the exclusion of African Schistosoma species. Then, our data argue strongly for the need for further phylogenetic study including new taxa and new genomic sequences before definitely concluding either an Asian or African origin for the genus Schistosoma.     

中国慈姑属系统发育的研究

本文研究了中国慈姑属植物间的系统发育关系。选取了12个与该属系统发育有较重要关系的特征,将8个已知分类群与外类群刺果泽泻属进行了比较。应用数量分支分析的Farris-Wagner方法,建立了中国慈姑属系统发育分支图。讨论了各分类群间的系统发育关系、该属起源和数量分支分析方法等问题。     

Relationships within tribe Lycieae (Solanaceae): paraphyly of Lycium and multiple origins of gender dimorphism

We infer phylogenetic relationships among Lycium, Grabowskia, and the monotypic Phrodus microphyllus, using DNA sequence data from the nuclear granule-bound starch synthase gene (GBSSI, waxy) and the chloroplast region trnT-trnF. This is the first comprehensive molecular phylogenetic study of tribe Lycieae (Solanaceae). In addition to providing an understanding of evolutionary relationships, we use the phylogenetic hypotheses to frame our studies of breeding system transitions, floral and fruit evolution, and biogeographical patterns within Lycieae. Whereas Lycium is distributed worldwide, Phrodus and the majority of Grabowskia species are restricted to South America. Tribe Lycieae is strongly supported as monophyletic, but Lycium likely includes both Grabowskia and Phrodus. Results also suggest a single dispersal event from the Americas to the Old World, and frequent dispersal between North and South America. The diversity of fruit types in Lycieae is discussed in light of dispersal patterns and recent work on fruit evolution across Solanaceae. Dimorphic gender expression has been studied previously within Lycium, and results indicate that transitions in sexual expression are convergent, occurring multiple times in North America (a revised estimate from previous studies) and southern Africa.     

我国新记录海链藻属物种的形态学和系统学研究

为了廓清我国海链藻属的物种多样性, 并丰富其分子生物学信息, 为后续的系统学研究提供基础数据, 从我国沿海分离并建立了海链藻的单克隆培养株系, 利用光学显微镜和电镜技术进行了形态学研究, 同时还对其核糖体大亚基的高变区序列进行了扩增和测序分析。结合形态学和分子生物学数据, 鉴定了我国海链藻属的2个新记录种: 狭线形海链藻Thalassiosira anguste-lineata (Schmidt) Fryxell & Hasle和碟形海链藻T. minicosmica Lee & Park。对它们的形态学特征进行了较为详尽的描述, 并与相似种进行了比较研究。此外, 还基于核糖体大亚基高变区的碱基序列信息, 分析了它们的分子系统学位置。在分子系统树上, 狭线形海链藻和碟形海链藻均不与该属模式种——诺氏海链藻T. nordenskioeldii 聚在同一分支上, 显示它们与典型海链藻属物种之间具有较大的遗传差异。分子系统树还显示, 目前基于形态学建立的海链藻属并非自然类群, 而是被骨条藻属Skeletonema、小环藻属Cyclotella、漂流藻属Planktoniella等邻近属种分隔成多个分支, 这预示着现存的海链藻属应该是一个并系类群, 在后续的系统学研究中, 或许会有较大的系统学调整, 但目前有限的分子生物学信息是相关研究推进的重要限制。     

Species recognition, geographic distribution and host-pathogen relationships: a case study in a group of lignicolous basidiomycetes, Phellinus s.l

Morphological, phylogenetic (sequencing of the ribosomal ITS region) and, if applicable, biological (pairings of single-spore testers) species recognition have been used to resolve relationships among 69 collections belonging to the Hymenochaetales genera Phellinus s.str. and Fomitiporia. The isolates originate from a variety of host plants in Europe, North America and Asia. Separate application of recognition modes led to differing results concerning the number of species, geographic distribution and host range. Sole application of morphological criteria was of limited value, especially in taxa exhibiting a wide distribution, both in terms of geographic origin and ecological niche. Relationships of putatively con-specific collections originating from different continents preferably should be resolved by using an integrative approach. In this study, application of a strict morphological approach led to the recognition of seven species. When using molecular and pairing test data, at least 12 species were detectable. Two of them, F. hesleri and F. polymorpha, are described as new. The number of Phellinus s.str. and Fomitiporia species supposed to have Northern Hemispheric or cosmopolitan distribution, when morphological characters are applied for species recognition, has been reduced significantly. As firm tendencies within morphological species, genetic divergence was more distinct in uniparental than in biparental taxa. In the latter, a strong correlation was observed between phylogenetic and biological species recognition. Overall length of the ribosomal ITS region clearly separated Phellinus s.str. and Fomitiporia but was of limited value as a diagnostic tool at species level. The level of innerspecific morphological plasticity of fruit bodies differs widely between even closely related species, suggesting that morphological transitions occur quite frequently in this fungal group. Considerable instability of the reproduction mode was evident in strains belonging to Phellinus tremulae and among closely related species of Fomitiporia.     

Plastomic data shed new light on the phylogeny,biogeography, and character evolution of the family Crassulaceae

Crassulaceae is a mid-sized family of angiosperms, most species of which are herbaceous succulents, usually with 5-merous flowers and one or two whorls of stamens. Although previous phylogenetic studies revealed seven major “clades” in Crassulaceae and greatly improved our understanding of the evolutionary history of the family, relationships among major clades are still contentious. In addition, the biogeographic origin and evolution of important morphological characters delimiting infrafamilial taxa have not been subject to formal biogeographic and character evolution analyses based on a well-supported phylogeny backbone. In this study, we used plastomic data of 52 species, representing all major clades revealed in previous studies to reconstruct a robust phylogeny of Crassulaceae, based on which we unraveled the spatiotemporal framework of diversification of the family. We found that the family may originate in southern Africa and then dispersed to the Mediterranean, from there to eastern Asia, Macaronesia, and North America. The crown age of Crassulaceae was dated at ca. 63.93 million years ago, shortly after the Cretaceous–Paleogene (K-Pg) boundary. We also traced the evolution of six important morphological characters previously used to delimit infrafamilial taxa and demonstrated widespread parallel and convergent evolution of both vegetative (life form and phyllotaxis) and floral characters (number of stamen whorls, petals free or fused, and flower merism). Our results provide a robust backbone phylogeny as a foundation for further investigations, and also some important new insights into biogeography and evolution of the family Crassulaceae.     

Phylogenetic analysis of RAD‐seq data: examining the influence of gene genealogy conflict on analysis of concatenated data

One of the major issues in phylogenetic analysis is that gene genealogies from different gene regions may not reflect the true species tree or history of speciation. This has led to considerable debate about whether concatenation of loci is the best approach for phylogenetic analysis. The application of Next‐generation sequencing techniques such as RAD‐seq generates thousands of relatively short sequence reads from across the genomes of the sampled taxa. These data sets are typically concatenated for phylogenetic analysis leading to data sets that contain millions of base pairs per taxon. The influence of gene region conflict among so many loci in determining the phylogenetic relationships among taxa is unclear. We simulated RAD‐seq data by sampling 100 and 500 base pairs from alignments of over 6000 coding regions that each produce one of three highly supported alternative phylogenies of seven species of Drosophila. We conducted phylogenetic analyses on different sets of these regions to vary the sampling of loci with alternative gene trees to examine the effect on detecting the species tree. Irrespective of sequence length sampled per region and which subset of regions was used, phylogenetic analyses of the concatenated data always recovered the species tree. The results suggest that concatenated alignments of Next‐generation data that consist of many short sequences are robust to gene tree/species tree conflict when the goal is to determine the phylogenetic relationships among taxa.     

Speciation pathway of Isoetes (Isoetaceae) in East Asia inferred from molecular phylogenetic relationships

Polyploidy plays an important role in the speciation of Iso?tes. Increasing our knowledge about the specific origin of each polyploid or phylogenetic relationship among species has been hampered because of conserved morphological variation and scarce habitats. We present several hypotheses concerning the speciation pathways of Iso?tes species distributed in East Asia. Our hypotheses are inferred from phylogenetic relationships that were elucidated using sequences of the internal transcribed spacer regions of nuclear ribosomal DNA, a second intron of LEAFY, and chloroplast DNA trnS-psbC spacer regions. These inferred phylogenetic relationships indicated that (1) the Chinese tetraploid, I. sinensis, is closely related to I. yunguiensis; (2) the Korean endemic species, I. hallasanensis, is an autotetraploid derived from I. taiwanensis or closely related taxa; (3) the hexaploid I. coreana forms a clade and has its closest evolutionary relationships with I. taiwanensis or I. hallasanensis; and (4) the Japanese hexaploid I. japonica is closely related to I. taiwanensis-I. coreana and I. sinensis-I. yunguiensis. These results suggest that interspecific hybridization and polyploidization have played central roles in speciation of East Asian Iso?tes. Furthermore, I. taiwanensis, an endemic species in Taiwan, has been involved in at least three cases of autopolyploid or allopolyploid speciation in East Asia.     

Mapping Quantitative Trait Loci onto a Phylogenetic Tree

Despite advances in genetic mapping of quantitative traits and in phylogenetic comparative approaches, these two perspectives are rarely combined. The joint consideration of multiple crosses among related taxa (whether species or strains) not only allows more precise mapping of the genetic loci (called quantitative trait loci, QTL) that contribute to important quantitative traits, but also offers the opportunity to identify the origin of a QTL allele on the phylogenetic tree that relates the taxa. We describe a formal method for combining multiple crosses to infer the location of a QTL on a tree. We further discuss experimental design issues for such endeavors, such as how many crosses are required and which sets of crosses are best. Finally, we explore the method's performance in computer simulations, and we illustrate its use through application to a set of four mouse intercrosses among five inbred strains, with data on HDL cholesterol.     

真菌系统学大趋势：越来越多的分类单元

分子生物学技术与真菌系统学的有机融合,为真菌分类和系统发育研究带来了革命性的变化。最近20年来,真菌学家们建立了大量的新目、新科、新属和新种,掀开了真菌多样性及其起源进化研究的新纪元,但很多重要的系统发育问题仍没有解决,特别是大量目间、科间的亲缘关系并不清楚。细分是真菌系统学的主流趋势,野生食用菌和毒蘑菇的分类也是如此,近年涌现了越来越多的新分类单元,如在2010-2019年的10年间,中国发表大型真菌（含地衣）新种1 240余个。本专刊收载的15篇论文是对我国野生食用菌和毒蘑菇研究工作的部分总结,对真菌资源利用、毒蘑菇中毒预防与治疗具有较重要的科学意义和应用价值。