四川黄龙沟优势兰科植物菌根真菌多样性及其季节变化

在自然条件下,兰科菌根真菌对兰花的种子萌发和植株生长都是必不可少的。为了解高原兰科植物菌根真菌的多样性状况及其季节性变化规律,选取了四川黄龙沟的两种生境中生长的8种优势兰科植物,分别于植株的萌芽期(4月份)、生长期(7月份)和果期(9月份)采集营养根进行菌根真菌的多样性研究。其中,黄花杓兰(Cypripedium flavum)、少花鹤顶兰(Phaiusdelavayi)、二叶匍茎兰(Galearis diantha)和广布小蝶兰(Ponerorchis chusua)分布在开阔生境;筒距兰(Tipularia szechuanica)、小花舌唇兰(Platanthera minutiflora)、珊瑚兰(Corallorhiza trifida)和尖唇鸟巢兰(Neottia acuminate)则分布在密林生境。通过对分离所得的50个菌株进行形态观察和ITS序列测定相结合的鉴定,共获得菌根真菌41种。对担子菌和子囊菌分别进行的系统发育树构建结果显示,子囊菌为优势种类(35种),以柔膜菌目(Helotiales)、炭角菌目(Xylariales)和肉座菌目(Hypocreales)内的种类为主,担子菌则以胶膜菌(Tulasnellaceaesp.)为主。在8种兰科植物中,二叶匐茎兰表现出极高的专一性,其菌根真菌均属于Hypocrea。其余兰科植物的菌根真菌分别属于不同的科,专一性相对较低。物种丰富度和Simpson多样性指数分析结果表明,密林生境的兰科植物的菌根真菌多样性在各生长季节基本高于开阔生境。此外,两种生境的优势兰科植物的菌根真菌物种多样性随生长季节转变所呈现的变化规律是相似的:萌发期和生长期的多样性均较高,峰值出现在生长期,到果期时则大幅下降。这与高原兰科植物的生长特性及营养供求规律基本相符。     

兰科植物与菌根真菌的营养关系

兰科植物与真菌具有天然的菌根共生关系。兰科植物种子细小,无胚乳,自然条件下只有与适宜的真菌共生才能萌发;兰科植物作为有花植物中最大的科之一,有光合自养、混合营养及完全真菌异养等营养类型。近年研究表明,不同营养类型的兰科植物其菌根真菌常具有一定的差异性,表现出不同的营养作用关系。本文对不同营养类型兰科植物与菌根真菌的营养作用关系的研究进展进行综述,并对兰科植物菌根营养机理、营养关系的变化等进行讨论,以期为兰科菌根营养学研究及菌根技术应用于兰科植物快繁和保育工作等提供参考。     

独花兰菌根真菌的分离及rDNA ITS序列在其分类鉴定中的应用

独花兰(Changnienia amoena Chien)为我国特有的独属独种兰科植物,仅生长于长江中下游及陕西南部的山地林下及沟谷中,是中国特有兰科物种之一,被列为国家二级保护植物.以浙江天目山自然保护区的野生独花兰中分离获得的菌根真菌为对象,应用传统的形态结构鉴别与rDNA ITS分子生物学手段相结合的研究方法,进行了菌株的分类鉴定研究,确定该菌株为兰科菌根真菌之一的胶膜菌属(Tulasnella)真菌.研究结果对于全面了解兰科植物菌根真菌的特征和有效保护独花兰植物资源均具较大意义和参考价值.     

兰科植物菌根真菌研究新见解

兰科(Orchidaceae)在地球生命系统演化中占有十分重要的地位,几乎全部兰科植物均处于不同程度的濒危状态,研究兰科菌根真菌对于保护珍稀濒危兰科植物具有重要意义。该文在对菌根真菌相关的概念及研究方法进行综述的基础上,对兰科菌根真菌的主要类群、特异性及其与兰科植物稀有性之间的关系,以及兰科菌根真菌与兰科植物之间的营养关系和进化关系进行了总结。兰科菌根真菌的研究方法可以归纳为经典研究方法、早期分子生物学方法、rDNA片段高通量测序法、宏基因组学方法。兰科菌根真菌类群主要隶属于担子菌门(Basidiomycota)、子囊菌门(Ascomycota)和毛霉门(Mucoromycota)。根据兰科菌根真菌特异性与否,首次明确了兰科菌根真菌定植关系可分为三大类:特异性定植、广泛性定植和特异-广泛兼性定植。根据营养关系特点,首次将兰科植物与菌根真菌之间的营养关系划分为三大类:兰花单向利好型、典型共生型、分工合作型。兰科菌根真菌特异性与兰科植物稀有性之间的关系呈现出两面性,而兰科菌根真菌与兰科植物之间是否存在协同进化关系还需要更多的研究才能阐明。此外,该文还对兰科菌根真菌领域今后的研究提出了一些思路。     

腐生型兰科植物研究进展

腐生型兰科植物又称完全菌根异养型兰(Fully Mycoheterotrophic Orchids),无绿叶,不含叶绿素,不能进行光合作用制造有机物,完全依靠与其共生的真菌提供营养。近年来,腐生兰独特的生活方式引起了生物学家对其生理生态及进化问题的广泛关注,但目前仍缺乏系统深入的研究。为此,作者通过整理《中国植物志》和近年来报道的相关文献,发现分布在中国的腐生型兰科植物约有23属81种,主要集中在天麻属(Gastrodia)(24种)、鸟巢兰属(Neottia)(8种)、无叶兰属(Aphyllorchis)(6种)、山珊瑚属(Galeola)(5种)等。由于腐生兰特殊的营养需求,相比于其他营养类型的兰科植物,其菌根真菌有较大区别。腐生兰的菌根真菌主要有两大类,即外生菌根真菌(Ectomycorrhizal fungi,ECM)和非丝核菌类的腐生菌(Non-rhizoctonia SAP fungi)。该文还综述了腐生兰与其菌根真菌的专一性、营养来源以及系统进化等问题,提出了目前研究存在的问题,并对今后的研究工作进行了展望,以期为腐生兰的资源保护及再生研究提供参考。     

兰科菌根的生态学研究进展

兰科植物(Orchidaceae)是典型的菌根植物,自然条件下其种子的成功萌发和生长的早期阶段对菌根真菌有绝对的依赖性,在有些成年兰科植物中菌根真菌仍起着重要的作用。目前大部分兰科植物已为濒危物种,鉴于兰科植物天然的菌根共生关系,开展兰科植物和菌根真菌互作的生态学研究不仅具有极高的科研价值,更有助于兰科植物的物种保护和野生种群的生态恢复。近年研究表明,兰科植物对真菌的选择和二者共生关系的建立与菌根真菌的空间分布和丰度密切相关,然而当前对自然环境中兰科菌根真菌的实际分布还了解甚少,因此文章从生态学角度系统分析兰科植物与菌根真菌的关系,探讨该领域的研究热点,旨在为兰科菌根的生态学研究提供参考。     

辽宁省八种兰科植物根内生真菌多样性

兰科植物的生存强烈依赖菌根真菌,研究兰科菌根真菌对兰科植物的保护有重要作用。本研究以辽宁省的无柱兰(Amitostigma gracile)、二叶舌唇兰(Platanthera chlorantha)、小斑叶兰(Goodyera repens)、蜻蜓兰(Tulotis fuscescens)、山兰(Oreorchis patens)、羊耳蒜(Liparis japonica)、长苞头蕊兰(Cephalanthera longibracteata)和绶草(Spiranthes sinensis) 8种属于极小种群的野生兰科植物为例,利用第二代测序技术对其根内生真菌多样性进行了研究。结果表明:无柱兰、二叶舌唇兰、小斑叶兰和山兰都偏好与角担菌科(Ceratobasidiaceae)真菌共生,羊耳蒜偏好与胶膜菌科(Tulasnellaceae)真菌共生;长苞头蕊兰主要与革菌科(Thelephoraceae)和蜡壳耳科(Sebacinaceae)真菌共生;绶草不仅能与丝核菌属(Rhizoctonia)真菌共生,还能与蜡壳耳科真菌共生;同种兰科植物的不同植株在同一生境下所选择的菌根真菌有差异,而同一地点的不同兰科植物的菌根真菌群落各不相同。由此可见,兰科植物根中菌根真菌的组成并非完全受植物自身控制,但主要菌根真菌仍取决于兰科植物的选择;这8种兰科植物根中的真菌绝大多数为非菌根真菌,而菌根真菌的丰度通常很低,这可能是辽宁地区兰科植物稀少的原因之一。     

兰科菌根研究综述

兰科菌根是一种内生菌根,主要寄生于兰科（Orchidaceae）植物的种子及根系上。对兰科菌根真菌的分类及真菌资源多样性、兰科菌根的形态和菌根对兰科植物的效应等最新研究进展进行了综述。目前研究已知,感染兰科植物根部并能与之共生的真菌绝大多数属于担子菌门（Basidiomycota）和半知菌门（Deuteromycotha）,也有部分属于子囊菌门（Ascomycota）;兰科菌根的形成可分为两种情况：一是对兰科植物种子的侵染;二是对成长新根的侵染。菌根真菌对兰科植物的种子萌发及植株生长发育均有一定影响。     

菌根真菌促进金钗石斛的生长及氮利用

菌根在兰科的生命周期和进化史上起着关键作用。兰科中大多数是附生兰,但它们的菌根研究相对缺乏。为了探讨菌根对附生兰的影响,本研究用金钗石斛（Dendrobium nobile）与通过形态学特征和分子生物学鉴定的分属于瘤菌根菌属（Epulorhiza）的s1和胶膜菌属（Tulasnella）的S3真菌共培养。共培养结果表明,S1和S3与金钗石斛形成了共生关系,且不同程度地促进了其生长。15N稳定同位素标记实验证实,S1菌株显著促进了金钗石斛对有机氮的利用,而S3菌株没有显著的促进作用。同时．S1和S3真菌均能提高金钗石斛中石斛碱的含量。研究结果表明,菌根真菌能促进附生兰幼苗的生长、有机氮的利用和次生代射产物的积累。     

春兰和蕙兰菌根真菌rDNA ITS序列及共生专一性分析

春兰(Cymbidium goeringii)和蕙兰(Cymbidium faberi)是我国较为广泛分布的地生类型兰属植物,具有悠久的栽培历史和很高的经济价值.菌根真菌与兰科植物专一性关系一直是兰科茵根研究中的热点.该文对35株分离自浙江天目山野生春兰和蕙兰的菌根真菌进行了rDNA ITS序列分析,并在此基础上初步探讨了菌根真菌与春兰、蕙兰之间的专一性关系.结果表明,分离获得的菌根真菌与其共生兰属植物在种的层面具显著专一性,即物种是影响或决定浙江天目山地区春兰、蕙兰与共生菌根真菌专一性的重要因素;研究同时发现,自蕙兰同一条根分离获得的菌根真菌菌株间亦表现丰富的多样性差异.     

辽宁省9种兰科植物根内与根际土壤中真菌群落结构的差异

兰科植物的生存及生长高度依赖其根中的共生真菌, 其中的菌根真菌更是对兰科植物的种子萌发与后续生长有着非常重要的作用, 研究兰科植物根中的真菌, 尤其是菌根真菌, 对兰科植物的保护有重要作用。该研究利用第二代测序技术, 对中国辽宁省境内的9种属于极小种群的兰科植物的根、根际土和根围土中的真菌群落和菌根真菌组成进行了研究。结果显示, 兰科植物根中的真菌群落和根际土、根围土中的真菌群落具有显著差异。兰科植物根中的总操作分类单元(OTU)数目远小于根际土和根围土中的总OTU数目。同时, 兰科植物根中菌根真菌的种类和丰度与根际土、根围土中菌根真菌的种类与丰度没有明显联系。FunGuild分析结果显示, 丛枝菌根真菌在根际土与根围土中的丰度非常高, 但在兰科植物的根中却数量极少。这些结果表明, 兰科植物根中的真菌群落与土壤中的真菌群落在一定程度上是相互独立的。     

菌根真菌与兰科植物互作的组学研究进展

兰科植物因其具有丰富的物种多样性和重要的社会经济价值,多年来一直是植物学及生态学界的重点研究对象。菌根真菌对兰科植物的种子萌发、营养吸收和种群动态等多个方面都具有十分重要的作用,因而近年来受到越来越多的关注。探究菌根真菌与兰科植物互作的内在机制是目前兰科菌根研究的一大热点领域,同时也为兰科植物野生资源保护和种群恢复提供了许多新方法与新思路。随着新一代测序技术以及多种组学数据库的发展与建立,菌根真菌与兰科植物互作机制研究已然进入了一个全新的时代。纵观近年来的研究,通过基因组学、转录组学、蛋白质组学和代谢组学等相关技术,人们对兰科菌根共生过程中的种子萌发、营养物质转运、信号转导、宿主免疫和逆境抗性等方面的内在机制有了一定的了解。本文对近十年来国内外采用组学技术研究菌根真菌与兰科植物互作机制方面的研究成果进行了总结和梳理,并对未来该领域的研究进行了展望。     

Continental-scale distribution and diversity of Ceratobasidium orchid mycorrhizal fungi in Australia

Background and AimsMycorrhizal fungi are a critical component of the ecological niche of most plants and can potentially constrain their geographical range. Unlike other types of mycorrhizal fungi, the distributions of orchid mycorrhizal fungi (OMF) at large spatial scales are not well understood. Here, we investigate the distribution and diversity of Ceratobasidium OMF in orchids and soils across the Australian continent.MethodsWe sampled 217 Ceratobasidium isolates from 111 orchid species across southern Australia and combined these with 311 Ceratobasidium sequences from GenBank. To estimate the taxonomic diversity of Ceratobasidium associating with orchids, phylogenetic analysis of the ITS sequence locus was undertaken. Sequence data from the continent-wide Australian Microbiome Initiative were used to determine the geographical range of operational taxonomic units (OTUs) detected in orchids, with the distribution and climatic correlates of the two most frequently detected OTUs modelled using MaxEnt.Key ResultsWe identified 23 Ceratobasidium OTUs associating with Australian orchids, primarily from the orchid genera Pterostylis, Prasophyllum, Rhizanthella and Sarcochilus. OTUs isolated from orchids were closely related to, but distinct from, known pathogenic fungi. Data from soils and orchids revealed that ten of these OTUs occur on both east and west sides of the continent, while 13 OTUs were recorded at three locations or fewer. MaxEnt models suggested that the distributions of two widespread OTUs are correlated with temperature and soil moisture of the wettest quarter and far exceeded the distributions of their host orchid species.ConclusionsCeratobasidium OMF with cross-continental distributions are common in Australian soils and frequently have geographical ranges that exceed that of their host orchid species, suggesting these fungi are not limiting the distributions of their host orchids at large spatial scales. Most OTUs were distributed within southern Australia, although several OTUs had distributions extending into central and northern parts of the continent, illustrating their tolerance of an extraordinarily wide range of environmental conditions.     

The importance of associations with saprotrophic non-Rhizoctonia fungi among fully mycoheterotrophic orchids is currently under-estimated: novel evidence from sub-tropical Asia

Background and Aims Most fully mycoheterotrophic (MH) orchids investigated to date are mycorrhizal with fungi that simultaneously form ectomycorrhizas with forest trees. Only a few MH orchids are currently known to be mycorrhizal with saprotrophic, mostly wood-decomposing, fungi instead of ectomycorrhizal fungi. This study provides evidence that the importance of associations between MH orchids and saprotrophic non-Rhizoctonia fungi is currently under-estimated.Methods Using microscopic techniques and molecular approaches, mycorrhizal fungi were localized and identified for seven MH orchid species from four genera and two subfamilies, Vanilloideae and Epidendroideae, growing in four humid and warm sub-tropical forests in Taiwan. Carbon and nitrogen stable isotope natural abundances of MH orchids and autotrophic reference plants were used in order to elucidate the nutritional resources utilized by the orchids.Key Results Six out of the seven MH orchid species were mycorrhizal with either wood- or litter-decaying saprotrophic fungi. Only one orchid species was associated with ectomycorrhizal fungi. Stable isotope abundance patterns showed significant distinctions between orchids mycorrhizal with the three groups of fungal hosts.Conclusions Mycoheterotrophic orchids utilizing saprotrophic non-Rhizoctonia fungi as a carbon and nutrient source are clearly more frequent than hitherto assumed. On the basis of this kind of nutrition, orchids can thrive in deeply shaded, light-limiting forest understoreys even without support from ectomycorrhizal fungi. Sub-tropical East Asia appears to be a hotspot for orchids mycorrhizal with saprotrophic non-Rhizoctonia fungi.     

Variation in nutrient-acquisition patterns by mycorrhizal fungi of rare and common orchids explains diversification in a global biodiversity hotspot

Background and Aims

Many terrestrial orchids have an obligate requirement for mycorrhizal associations to provide nutritional support from germination to establishment. This study will investigate the ability of orchid mycorrhizal fungi (OMF) to utilize a variety of nutrient sources in the nutrient-impoverished (low organic) soils of the Southwest Australian Floristic Region (SWAFR) in order to effectively compete, survive and sustain the orchid host.

Methods

Mycorrhizal fungi representing key OMF genera were isolated from three common and widespread species: Pterostylis recurva, Caladenia flava and Diuris corymbosa, and one rare and restricted species: Drakaea elastica. The accessibility of specific nutrients was assessed by comparing growth including dry biomass of OMF in vitro on basal CN MMN liquid media.

Key Results

Each of the OMF accessed and effectively utilized a wide variety of nutrient compounds, including carbon (C) sources, inorganic and organic nitrogen (N) and inorganic and organic phosphorus (P). The nutrient compounds utilized varied between the genera of OMF, most notably sources of N.

Conclusions

These results suggest that OMF can differentiate between niches (micro-niche specialization) in a constrained, highly resource-limited environment such as the SWAFR. Phosphorus is the most limited macronutrient in SWAFR soils and the ability to access phytate by OMF indicates a characterizing functional capacity of OMF from the SWAFR. Furthermore, compared with OMF isolated from the rare D. elastica, OMF associating with the common P. recurva produced far greater biomass over a wider variety of nutritional sources. This suggests a broader tolerance for habitat variation providing more opportunities for the common orchid for recruitment and establishment at a site.     

Widespread mycorrhizal specificity correlates to mycorrhizal function in the neotropical, epiphytic orchid Ionopsis utricularioides (Orchidaceae)

Tropical orchids constitute the greater part of orchid diversity, but little is known about their obligate mycorrhizal relationships. The specificity of these interactions and associated fungal distributions could influence orchid distributions and diversity. We investigated the mycorrhizal specificity of the tropical epiphytic orchid Ionopsis utricularioides across an extensive geographical range. DNA ITS sequence variation was surveyed in both plants and mycorrhizal fungi. Phylogeographic relationships were estimated for the mycorrhizal fungi. Orchid functional outcomes were determined through in vitro seed germination and seedling growth with a broad phylogenetic representation of fungi. Most fungal isolates derived from one clade of Ceratobasidium (anamorphs assignable to Ceratorhiza), with 78% within a narrower phylogenetic group, clade B. No correlation was found between the distributions of orchid and fungal genotypes. All fungal isolates significantly enhanced seed germination, while fungi in clade B significantly enhanced seedling growth. These results show that I. utricularioides associates with a phylogenetically narrow, effective fungal clade over a broad distribution. This preference for a widespread mycorrhizae may partly explain the ample distribution and abundance of I. utricularioides and contrasts with local mycorrhizal diversification seen in some nonphotosynthetic orchids. Enhanced orchid function with a particular fungal subclade suggests mycorrhizal specificity can increase orchid fitness.     

药用植物绶草（兰科）的菌根真菌群落组成分析

兰科菌根真菌（OMF）被认为是影响兰科植物物种丰度和分布的一个重要因素。对广域分布兰科植物的菌根区系进行研究有助于人们更深入地了解兰科植物分布格局的形成机制。本研究以我国广域分布的兰科药用植物绶草Spiranthes sinensis为材料,采用Illumina Miseq高通量测序技术对北京、上海、江西、广西、云南、甘肃6个样地的绶草菌根区系进行了研究。一共检测到51个OMF分类单元,其中角担菌科Ceratobasidiaceae真菌是绶草菌根的主要类群,约有1/3的角担菌科种类存在于所有的样本中,说明该类真菌亦广域分布;胶膜菌科Tulasnellaceae、肉丝耳科Serendipitaceae、红菇科Russulaceae、革菌科Thelephoraceae、口蘑科Tricholomataceae等真菌亦有发现,只是其相对多度较低,且较多种类表现出明显的地域特异性;6个样地的绶草菌根区系组成存在显著性差异,且这种差异与地理距离之间并未表现出明显的相关性,暗示菌根区系组成更多受生境因素的影响。本研究结果可为进一步采用菌根技术实现该类兰科药用植物的种质保育及栽培生产提供理论参考。     

Strong phylogenetic congruence between Tulasnella fungi and their associated Drakaeinae orchids

The study of congruency between phylogenies of interacting species can provide a powerful approach for understanding the evolutionary history of symbiotic associations. Orchid mycorrhizal fungi can survive independently of orchids making cospeciation unlikely, leading us to predict that any congruence would arise from host-switches to closely related fungal species. The Australasian orchid subtribe Drakaeinae is an iconic group of sexually deceptive orchids that consists of approximately 66 species. In this study, we investigated the evolutionary relationships between representatives of all six Drakaeinae orchid genera (39 species) and their mycorrhizal fungi. We used an exome capture dataset to generate the first well-resolved phylogeny of the Drakaeinae genera. A total of 10 closely related Tulasnella Operational Taxonomic Units (OTUs) and previously described species were associated with the Drakaeinae orchids. Three of them were shared among orchid genera, with each genus associating with 1–6 Tulasnella lineages. Cophylogenetic analyses show Drakaeinae orchids and their Tulasnella associates exhibit significant congruence (p < 0.001) in the topology of their phylogenetic trees. An event-based method also revealed significant congruence in Drakaeinae–Tulasnella relationships, with duplications (35), losses (25), and failure to diverge (9) the most frequent events, with minimal evidence for cospeciation (1) and host-switches (2). The high number of duplications suggests that the orchids speciate independently from the fungi, and the fungal species association of the ancestral orchid species is typically maintained in the daughter species. For the Drakaeinae–Tulasnella interaction, a pattern of phylogenetic niche conservatism rather than coevolution likely explains the observed phylogenetic congruency in orchid and fungal phylogenies. Given that many orchid genera are characterized by sharing of fungal species between closely related orchid species, we predict that these findings may apply to a wide range of orchid lineages.