Morphological and niche divergence of pinyon pines

The environmental variables that define a species ecological niche should be associated with the evolutionary patterns present in the adaptations that resulted from living in these conditions. Thus, when comparing across species, we can expect to find an association between phylogenetically independent phenotypic characters and ecological niche evolution. Few studies have evaluated how organismal phenotypes might mirror patterns of niche evolution if these phenotypes reflect adaptations. Doing so could contribute on the understanding of the origin and maintenance of phenotypic diversity observed in nature. Here, we show the pattern of niche evolution of the pinyon pine lineage (Pinus subsection Cembroides); then, we suggest morphological adaptations possibly related to niche divergence, and finally, we test for correlation between ecological niche and morphology. We demonstrate that niche divergence is the general pattern within the clade and that it is positively correlated with adaptation.     

应用生态位模型研究外来入侵物种生态位漂移

由于基础生态位和实际生态位的改变,外来入侵物种在入侵地成功定殖、扩散后常会发生生态位漂移,而物种生态位漂移往往很难直接证明。生态位模型在假设入侵物种的生态位需求保守的前提下,以物种在其原产地的生态位需求为基础,预测其在入侵地的潜在分布,通过比较预测分布与实际分布的差异可以从一定程度上得到外来入侵物种的生态位是否发生漂移的间接证据。以我国入侵杂草胜红蓟在原产地的生态位需求为基础,应用生态位模型预测其在其他地区的潜在分布。研究结果表明,生态位模型可以很好地预测胜红蓟在亚太平洋地区和非洲地区的分布,但在我国,其预测分布与实际分布存在较大差别。胜红蓟在我国预测分布主要为云南、海南、台湾部分地区,而胜红蓟入侵我国后现已广泛分布于长江以南地区,其实际分布比预测分布广泛得多,由此推测胜红蓟在入侵我国后其生态位已经产生了漂移。     

Towards a trait-based quantification of species niche

Aims Although the niche concept is of prime importance in ecology, the quantification of plant species' niches remains difficult. Here we propose that plant functional traits, as determinants of species performance, may be useful tools for quantifying species niche parameters over environmental gradients.Important findings Under this framework, the mean trait values of a species determine its niche position along gradients, and intraspecific trait variability determines its niche breadth. This trait-based approach can provide an operational assessment of niche for a potentially large number of species, making it possible to understand and predict species niche shifts under environmental changes. We further advocate a promising method that recently appeared in the literature, which partitions trait diversity into among- and within-community components as a way to quantify the species niche in units of traits instead of environmental parameters. This approach allows the switch of the focus from ecological niches to trait niches, facilitating the examination of species coexistence along undefined environmental gradients. Altogether, the trait-based approach provides a promising toolkit for quantifying the species ecological niche and for understanding the evolution of species niche and traits.     

莱州湾鱼类群落优势种生态位

根据2011年5月、8月、10月和12月莱州湾底拖网调查资料,对该海域鱼类群落优势种的生态位进行了研究。结果表明,全年调查共捕获鱼类49种,各季节优势种种类数分别为春季3种,夏季5种,秋季3种,冬季4种。夏、冬季优势种的丛生指数较低,春、秋季较高;冬、春季优势种的平均拥挤度较低,夏、秋季较高。基于欧氏距离的优势种丰度聚类结果同优势度排序结果吻合。主成分分析(PCA)表明,青鳞小沙丁鱼(Sardinella zunasi)和赤鼻棱鳀(Thryssa kammalensis)分别是影响第一轴和第二轴的主要种类。绯鱼衔(Callionymus beniteguri)、鲬(Platycephalus indicus)、髭缟虾虎鱼(Tridentiger barbatus)和短吻红舌鳎(Cynoglossus joyneri)是时空二维生态位宽度最高的种类(2)。时空生态位显著重叠(0.6)的种类有7组,其中银姑鱼(Pennahia argentata)和皮氏叫姑鱼(Johnius belengerii)重叠值最高(0.798)。δ~(13)C值变幅(CR)最大的种类为斑鱼祭(Konosirus punctatus),δ~(15)N值变幅(NR)最大的种类为青鳞小沙丁鱼;青鳞小沙丁鱼和鱼祭生态位总面积超过20,皮氏叫姑鱼生态位总面积最小(1.38)且与其他优势种营养生态位重叠较高。等级聚类、排序、PCA和优势种排序结果较一致,而与时空生态位宽度分析结果差异较大,表明莱州湾鱼类群落结构受洄游鱼类的影响较大。时空生态位宽度较高的种类主要为集群特征不明显的周年定居种(绯鱼衔、鲬、短吻红舌鳎等底层鱼类),而季节洄游种(青鳞小沙丁鱼、鱼祭、赤鼻棱鳀等中上层鱼类)因时间生态位宽度较低导致时空生态位宽度较低。时空生态位和营养生态位分析表明,生态位重叠导致的资源利用性竞争并不是导致莱州湾鱼类群落结构现状的决定性因素,而更多可能是人为干扰形成的。     

Isotopic niche is not equal to trophic niche

The work of Sheppard et al. (Ecol. Lett., 21, 2018, 1395) relies on the strong assumption that isotopic niche is equal to trophic niche. Here I raise three main concerns showing that classic hypotheses built upon trophic niche cannot be directly interpreted in isotopic space. Future studies should always keep isotopic and trophic niches distinct.     

长苞铁杉群落优势种群高度生态位研究

基于天宝岩国家级自然保护区内长苞铁杉群落的调查数据 ,以不同高度作为一维资源位状态 ,以个体多度为生态位计测的资源状态指标 ,对群落中的 1 2个优势树种进行了生态位的计测和分析。结果表明 ,长苞铁杉具有较大的生态位宽度值 ,具有一定的稳定性 ;各优势树种 ,均表现出一定程度的对环境适应的相似性和生态位重叠。长苞铁杉与阳性树种柳杉、耐荫树种中偏阳性树种木荷之间的生态位相似性和生态位重叠值比与耐荫性树种深山含笑、细叶青冈之间的都要大。这些分析结果为珍稀濒危植物长苞铁杉的保护提供了科学依据     

Ecological niche models of invasive seaweeds

Ecological niche models (ENMs) are commonly used to calculate habitat suitability from species’ occurrence and macroecological data. In invasive species biology, ENMs can be applied to anticipate whether invasive species are likely to establish in an area, to identify critical routes and arrival points, to build risk maps and to predict the extent of potential spread following an introduction. Most studies using ENMs focus on terrestrial organisms and applications in the marine realm are still relatively rare. Here, we review some common methods to build ENMs and their application in seaweed invasion biology. We summarize methods and concepts involved in the development of niche models, show examples of how they have been applied in studies on algae and discuss the application of ENMs in invasive algae research and to predict effects of climate change on seaweed distributions.     

昆承湖优势种鱼类时空-营养生态位

为了解昆承湖优势种鱼类资源利用情况,首先利用生态位方法计算了时间、空间及营养三个资源维度的生态位宽度及重叠值,然后根据时空-营养生态位宽度值将优势种鱼类划分为广位种、中位种和窄位种,最后讨论了生态位宽度及重叠的可能原因。结果显示：刀鲚Coilia nasus、蒙古鲌Chanodichthys mongolicus、似鱎Toxabramis swinhonis、似鳊Pseudobrama simoni、鳙Hypophthalmichthys nobilis、鲢Hypophthalmichthys molitrix、花鱼骨Hemibarbus maculatus、似刺鳊鮈Paracanthobrama guichenoti、大鳍鱊Acheilognathus macropterus和鲫Carassius auratus为优势种。在时间维度：鲢的生态位宽度最大,似鳊的最小;生态位重叠具有显著意义的有24对,占总的53.33%。在空间维度,似刺鳊鮈最大,鲢最小;生态位重叠具有显著意义的有36对,占总的80%。在营养维度,最大的为鲫,最小的为花鱼骨;生态位重叠具有显著意义的有8对,占17.78%...     

水稻纹枯病菌的矿质营养生态位

运用生态位原理与方法,研究了水稻纹枯病菌的矿质元素营养生态位.结果表明,在分蘖盛期、孕穗期、抽穗期和蜡熟期,水稻纹枯病菌矿质营养生态位宽度指数分别为0.2710、0.3865、0.4252和0.4817,即随着水稻的生长而逐渐增大,但各生育期的生态位宽度总体上仍偏小.表明在水稻生长的各时期水稻纹枯病菌只占有了矿质营养类型中的较少部分.水稻纹枯病菌总是优先占有低Mg、低Zn、低Si的营养位,说明Mg、Zn、Si的含量与水稻对纹枯病的抗性紧密相关.     

槭叶铁线莲(Clematis acerifolia Maxim.)群落物种生态位研究

槭叶铁线莲（Clematis acerifolia）为太行山特有植物,但数量稀少且分布零散,其生存状况受到学者和政府部门的高度关注。本文通过对河北省易县葫芦峪沟谷新发现的槭叶铁线莲群落的典型样地调查,以物种重要值作为生态位计量指标,对各物种生态位宽度、生态位重叠和生态位相似性进行了定量分析,对槭叶铁线莲的生存安全状况进行了评估。结果表明：在调查样地中共记录到14科15属17种植物,群落物种组成较为简单,槭叶铁线莲在大部分调查样地中的重要值最大,占据优势地位,其他物种重要值相对较低;群落内所有物种中,槭叶铁线莲的生态位宽度最大（B_i=6.264）,绒毛绣线菊（Spiraea dasyantha）次之（B_i=5.144）,其他种类较小;所有物种组成的136个种对中,生态位完全重叠（Q_ik=1）、重叠程度较高（0.5≤Q_ik<1）和重叠程度较低（Q_ik<0.5）的种对比例分别为8.09%、16.91%和75.00%,生态位完全相似（C_ik=1）、相似程度较高（0.5≤C_ik<1）和相似程度较低（C_ik<0.5）的种对比例分别为8.09%、5.88%和86.03%,大部分物种之间生态位重叠程度和相似性都处于较低水平;槭叶铁线莲与其他物种构成的16个种对中,62.50%的种对生态位重叠程度较低（Q_ik<0.5）,81.25%的种对生态位相似性程度较低（C_ik<0.5）,反映出群落内各物种间对资源和空间的竞争较为温和,群落较为稳定,槭叶铁线莲在其分布生境中生存状况相对安全;本文研究表明,利用生态位分析方法可以作为珍稀濒危物种生存状态和安全风险评估的一种方法。     

Stable isotopes are quantitative indicators of trophic niche

Hette‐Tronquart (2019, Ecol. Lett.) raises three concerns about our interpretation of stable isotope data in Sheppard et al. (2018, Ecol. Lett., 21, 665). We feel that these concerns are based on comparisons that are unreasonable or ignore the ecological context from which the data were collected. Stable isotope ratios provide a quantitative indication of, rather than being exactly equivalent to, trophic niche.     

洲际入侵植物生态位稳定性研究进展

人类活动引起的大规模洲际物种交换与生物入侵, 改变了当地生态系统结构与功能, 使生物多样性受到日益严重的威胁。本文通过综合分析主要国家和地区入侵植物的地理起源, 发现洲际入侵主要包括东亚—北美、东亚—南美、欧洲—南非、欧洲—北美、欧洲—东亚、北美—大洋洲等, 这些洲际入侵造成的后果往往比陆内入侵更为严重。利用物种分布模型(SDMs)预测入侵物种潜在分布范围是有效管理和提早预防生物入侵的重要依据, 但这些模型的一个关键假定是: 入侵物种的生态位在空间和时间上是保守的、稳定的。然而, 对于远离原产地种群并能快速适应新生境的洲际入侵植物来说, 生态位可能发生显著的变化。入侵种能否在入侵地保持原有的生态位, 取决于制约其生态分布的限制因素和生态过程在不同地区间是否发生变化。本文中作者总结了洲际入侵与陆内入侵的生态与进化过程的异同点, 认为这些限制物种原产地分布的因素如扩散限制、种间互作、适应性进化、生态可塑性和种群遗传特性等均可能导致入侵物种生态位的改变。建议下一步的研究应该重视: (1)对生态位属性进行多尺度的研究, 包括时间、空间、环境或系统发育等几个方面; (2)对比生态位稳定与发生偏移的物种特性, 确定什么样的入侵物种更容易改变原有的生态位; (3)进行生态位时间动态格局研究, 探讨生态位变化的倾向、历史速率和偏移程度, 以便判定生态位变化趋势。这些研究结果将会进一步提高物种分布模型的预测能力, 有助于更为准确地揭示气候变化和物种入侵对生物多样性的影响。     

Phylogenetic relationships and ecological niche conservatism in killifish (Profundulidae) in Mesoamerica

The family Profundulidae is a group of small-sized fish species distributed between southern Mexico and Honduras, where they are frequently the only fish representatives at higher elevations in the basins where they occur. We characterized their ecological niche using different methods and metrics drawn from niche modelling and by re-examining phylogenetic relationships of a recently published molecular phylogeny of this family to gain a better understanding of its biogeographic and evolutionary history. We assessed both lines of evidence from the perspective of niche conservatism to set a foundation for discussing hypotheses about the processes underlying the distribution and evolution of the group. In fish clades where the species composition is not clear, we examined whether niche classification could be informative to discriminate groups geographically and ecologically consistent with any of the different hypotheses of valid species. The characterization of the ecological niche was carried out using the Maxent algorithm under different parameterizations and the projection of the presence on the main components of the most relevant environmental coverage, and the niche comparison was calculated with two indices (D and I), both in environmental space and in that projected geographically. With the molecular data, a species tree was generated using the *BEAST method. The comparison of these data was calculated with an age-overlap correlation test. Based on the molecular phylogeny and on niche overlap analyses, we uncovered strong evidence to support the idea that ecologically similar species are not necessarily sister species. The correlation analysis for genetic distance and niche overlap was not significant (P > 0.05). In clades with taxonomic conflicts, we only identified Profundulus oaxacae as a geographically and ecologically distinct group from P. punctatus. All the evidence considered leads us to propose that Profundulidae do not show evidence of niche conservatism and that there are reasons to consider P. oaxacae as a valid species. Our study suggests that niche divergence is a driving evolutionary force that caused the diversification and speciation processes of the Profundulidae, along with the geological and climatic events that promoted the expansion or contraction of suitable environments.     

Environmental niche equivalency versus conservatism: quantitative approaches to niche evolution

Environmental niche models, which are generated by combining species occurrence data with environmental GIS data layers, are increasingly used to answer fundamental questions about niche evolution, speciation, and the accumulation of ecological diversity within clades. The question of whether environmental niches are conserved over evolutionary time scales has attracted considerable attention, but often produced conflicting conclusions. This conflict, however, may result from differences in how niche similarity is measured and the specific null hypothesis being tested. We develop new methods for quantifying niche overlap that rely on a traditional ecological measure and a metric from mathematical statistics. We reexamine a classic study of niche conservatism between sister species in several groups of Mexican animals, and, for the first time, address alternative definitions of "niche conservatism" within a single framework using consistent methods. As expected, we find that environmental niches of sister species are more similar than expected under three distinct null hypotheses, but that they are rarely identical. We demonstrate how our measures can be used in phylogenetic comparative analyses by reexamining niche divergence in an adaptive radiation of Cuban anoles. Our results show that environmental niche overlap is closely tied to geographic overlap, but not to phylogenetic distances, suggesting that niche conservatism has not constrained local communities in this group to consist of closely related species. We suggest various randomization tests that may prove useful in other areas of ecology and evolutionary biology.