罗尼氏弧菌Vibrio shilonii BY新琼胶酶基因的克隆、序列分析及表达

【目的】从海洋来源的罗尼氏弧菌菌株BY中克隆得到一个具有琼胶酶活性的新基因,并对其进行重组表达。【方法】对实验室保藏的产琼胶酶菌株BY进行16S rRNA基因序列分析,并构建系统发育树。根据已报道的琼胶酶基因序列的同源性,设计简并引物,利用降落PCR (Touch-down PCR)及染色体步移技术扩增琼胶酶基因序列全长,对基因序列进行生物信息学分析。将目的基因插入pET22a(+)载体,转化大肠杆菌BL21(DE3),对重组酶进行表达,利用DNS法测定了重组酶的酶活,对该重组琼胶酶酶学性质进行研究。【结果】克隆得到一条新的琼胶酶基因,命名为Vibrio sp. BY (GenBank登录号：AIW39921.1),Vibrio sp. BY基因序列全长2 232 bp,编码744个氨基酸,理论分子量为85 kD,Vibrio sp. BY的氨基酸序列基因库中与已知的琼胶酶氨基酸序列Vibrio sp. EJY3的相似度为86%。发酵液琼胶酶酶活力为71.73 U/mL,证明表达的蛋白为琼胶酶。酶学性质研究表明重组琼胶酶的最适温度及pH分别为50 °C和7.0,并且具有较好的稳定性。【结论】利用染色体步移技术克隆得到一条新的琼胶酶基因,并在大肠杆菌BL21(DE3)中实现了重组表达,为琼胶酶的应用奠定了基础。     

深海太平洋火色杆菌琼胶降解基因分析和琼胶酶Aga0950的表达及酶学性质

【目的】对深海太平洋火色杆菌(Flammeovirga pacifica WPAGA1)全基因组进行生物信息学分析,筛选获得琼胶酶基因aga0950,采用基因工程手段对该基因的功能和性质进行验证和分析。【方法】采用Illumina HiSeq2500测序技术进行基因组测序分析;采用克隆表达和镍柱纯化方法获得纯aga0950基因表达产物;采用薄层层析(TLC)和离子色谱(IC)法分析酶降解琼胶产物;采用二硝基水杨酸法(DNS)测定琼胶酶活性。【结果】基因组序列分析表明,菌株WPAGA1全基因组拥有13个β-琼胶酶相关基因;氨基酸序列比对显示,同源性为60%–85%,其中aga0950是具有GH16家族典型特征的基因,同源性为67%。纯化的重组酶Aga0950比活力达51770 U/mg,具有高效降解琼胶活性,降解终产物为新琼四糖和新琼六糖;最适温度为50°C,最适pH为4.0–10.0;Co~(2+)、Mn~(2+)和Fe3+促进酶活,Cu~(2+)抑制酶活。【结论】深海菌株WPAGA1具有丰富的琼胶酶基因;属于GH16家族的琼胶酶基因aga0950表达产物具有高效降解胶琼活性和良好的热、酸、碱稳定性。     

采用随机突变方法对β-琼胶酶YM01-3活性位点的研究

【背景】琼胶酶是一种多糖水解酶,在保健食品、医药、科研及化妆品等行业极具价值。本实验室发现来源自嗜琼胶卵链菌(Catenovulumagarivorans)的β-琼胶酶YM01-3具有较高的酶活性,在最适条件下的比酶活可达到1.14×10~4U/mg。【目的】探讨不同位点的突变对β-琼胶酶YM01-3酶活力的作用,发现影响其酶活力的新位点。【方法】通过易错PCR在短芽孢杆菌(Bacillus brevis)表达系统中构建随机突变文库,从约10 000个克隆中筛选出227株有效突变体,从中选取80株进行测序。【结果】对突变体序列进行分析和定点突变验证发现,137位和237位氨基酸发生突变后酶活力丧失90%以上。【结论】位于催化腔内的137位和237位氨基酸,对于维持β-琼胶酶YM01-3酶活力具有重要作用。该研究结果为β-琼胶酶的催化机理研究及分子改造提供了借鉴。     

深海太平洋火色杆菌琼胶酶Aga2660的克隆表达及发酵优化

【背景】琼胶寡糖已成为化妆品、食品、医药等领域的研究热点,而生物酶法被认为是制备琼胶寡糖的高效方法。【目的】从深海太平洋火色杆菌(Flammeovirga pacifica WPAGA1)筛选获得琼胶酶基因aga2660,对基因aga2660进行克隆转化,使其在大肠杆菌中进行表达,分析重组酶的性质以及酶解产物。【方法】采用克隆表达和镍柱纯化方法获得aga2660基因表达的纯化产物;采用薄层层析和离子色谱法分析酶解产物;5L发酵罐采用补料阶段指数流加、诱导阶段乳糖连续流加的策略进行产酶发酵条件的优化。【结果】基因aga2660是具有GH50家族典型特征的基因,酶解产物为单一的新琼二糖。最适温度为30°C,最适pH为7.0,Mn2+、Ca2+和Mg2+能促进琼胶酶Aga2660的酶活。采用发酵优化策略后的酶活达到11.81U/mL,比优化前提高了13.2倍。【结论】琼胶酶Aga2660具有良好的热、酸、碱稳定性,其酶解产物为单一的新琼二糖,这为特定聚合度琼胶寡糖的制备奠定了良好基础。     

一株产琼胶酶细菌的分离、鉴定及其琼胶酶基本性质

【目的】分离海洋来源的琼胶酶产生菌,对其进行分类鉴定,并研究其所产琼胶酶的基本酶学性质,为琼胶酶的应用研究及开发利用奠定基础。【方法】通过以琼脂为唯一碳源的选择培养基分离产琼胶酶的菌株;利用16S rRNA基因序列分析、表型和生理生化特征对菌株进行鉴定;通过DNS-还原糖法测定琼胶酶活性;利用显色底物法测定琼胶酶的类型;对菌株所产琼胶酶粗酶的酶学性质进行初步研究。【结果】分离到一株产琼胶酶的菌株NTa,16S rRNA基因序列分析显示该菌株属于寡养单胞菌属(Stenotrophomonas sp.);该菌株主要产胞外琼胶酶,可分泌α-琼胶酶和β-琼胶酶;琼胶酶粗酶的最适反应温度和pH分别为40℃和7.0,并且琼胶酶在温度低于30℃,pH为7.0-9.0时稳定;Ca2+对琼胶酶粗酶具有促进作用,Ag+、Fe2+、Ba2+、Mn2+、Cu2+、Zn2+和Fe3+均可不同程度地抑制酶的活性;EDTA对琼胶酶粗酶活性具有抑制作用;琼胶酶粗酶对检测的抑制剂、去垢剂及变性剂有较好的抗性。【结论】海洋细菌Stenotrophomonas sp.NTa是一种新型的产琼胶酶菌株,可同时分泌α-琼胶酶和β-琼胶酶,具有潜在开发利用价值。     

琼胶酶AgaD在大肠杆菌中的高效表达

摘要:【目的】构建琼胶酶AgaD的高效表达体系,优化发酵条件提高重组酶的表达量。【方法】首先根据大肠杆菌(E.coli)密码子偏好性,优化并合成AgaD的基因,使其适合E.coli表达系统;考察了不同的E.coli表达宿主;根据N端法则构建了突变体;评价了培养基中添加CaCl2和甘氨酸(Gly)对重组酶表达的影响。【结果】成功构建了琼胶酶AgaD 的高效表达体系,确定了E.coli AD494(DE3)为最适表达宿主;利用N端法则提高了重组酶的稳定性,缩短了发酵时间;通过在培养基中添加CaCl2和甘氨酸(Gly)进一步提高了胞外酶产量。最终,发酵上清中重组酶的活力由20 U/L提高至11300 U/L,比优化前提高了500余倍。【结论】构建了琼胶酶AgaD的高效表达体系,为GH96家族琼胶酶的深入研究奠定了基础。     

嗜热脱氮土壤芽孢杆菌β-葡萄糖苷酶的克隆与重组表达及其酶学性质研究

【目的】克隆嗜热脱氮土壤芽孢杆菌中的β-葡萄糖苷酶基因bglB,在E.coli中异源表达,纯化并研究其酶学性质。【方法】利用PCR技术从嗜热脱氮土壤芽孢杆菌的基因组DNA中克隆得到bglB基因,将该基因克隆到表达载体pGEX-2TL上并在大肠杆菌BL21(DE3)中表达,对纯化后的β-葡萄糖苷酶的酶学性质及寡聚状态进行分析。【结果】重组表达的β-葡萄糖苷酶最适温度为65°C,最适pH为7.0,能在pH 5-10、60°C下稳定存在4 h,并能在较高的离子强度(880 mmol/L K+)下发挥其功能。Al3+离子对其有强烈的激活作用,Co2+有一定的抑制作用。最适反应条件下该酶比活力为0.043 IU/mg。该酶具有多种寡聚体形式,这些寡聚体均有β-葡萄糖苷酶活性。【结论】获得一个耐热耐盐的中性β-葡萄糖苷酶,为进一步研究β-葡萄糖苷酶的催化作用机理,提高其热稳定性提供一定的帮助。     

南极菌产琼胶酶aga3311的表达、性质及其降解特性

【目的】本文通过对具有琼胶降解能力的南极菌Pseudoalteromonas sp.NJ21全基因组进行生物信息学分析,筛选获得琼胶酶疑似序列aga3311,采用基因工程手段对该基因的功能和性质进行了验证和分析。【方法】首先对aga3311进行克隆和表达;采用Ni-NTA对重组酶进行纯化;DNS-还原糖法测定重组酶的酶学性质;用薄层层析(TLC)和质谱(MS)技术对Aga3311的酶解产物进行分析。【结果】构建的重组表达质粒p ET-30(a)+aga3311能够在工程菌E.coli BL21(DE3)中实现高效表达,其中可溶性表达为30%左右;纯化的重组酶Aga3311分子量为87 k Da,其最适作用温度为35°C,30–45°C的范围内稳定性较高,50°C则迅速失活,具有热不稳定的特征;最适p H为7.0,在p H 4.0–10.0的范围内仍能保持50%以上的活性;金属离子Fe~(3+)、Be~(2+)、Zn~(2+)和Ca~(2+)均能显著提高Aga3311的活性,特别是Ca~(2+)使其酶活提高1倍。该酶的酶解终产物经TLC和质谱分析主要为新琼二糖。【结论】重组酶Aga3311为Glyco_hydro_42家族的外切型β-琼胶酶,能够特异性降解琼脂糖生成新琼二糖。     

重组β-葡萄糖苷酶生产龙胆低聚糖的工艺条件优化

摘要：【目的】β-葡萄糖苷酶可用于酶法生产龙胆低聚糖。为了给龙胆低聚糖的生产提供大 量的酶来源,构建基因工程菌表达黑曲霉(CMI CC 324626)β-葡萄糖苷酶基因（bgl）并研究重组酶生产龙胆低聚糖的工艺条件。【方法】将bgl克隆到表达载体pPIC9K,转化毕赤酵母（Pichia pastoris）KM71。表达产物通过HPLC和LC-MS鉴定了其可用于生产龙胆低聚糖的转苷活性,并对酶转化葡萄糖生产龙胆低聚糖的反应条件进行了优化。【结果】实现了β-葡萄糖苷酶的过量表达。当底物葡萄糖浓度为80%,反应pH4.5,温度为60℃,加酶量为每克葡萄糖60 U,添加1 mmol/L的K+,转化周期为48 h,龙胆低聚糖累计达到最大为50 g/L。【结论】本研究是国内外首次利用重组酶酶法生产龙胆低聚糖的报道。     

沙质微泡菌β-1,3(4)-葡聚糖酶的克隆表达及酶学性质

【背景】β-葡聚糖是自然界中广泛存在的非淀粉多糖,是谷类植物细胞壁的主要成分。β-葡聚糖酶能够水解β-葡聚糖生成低聚合度的寡糖,在食品、饲料、造纸等领域发挥着重要的作用。【目的】从海洋细菌沙质微泡菌(Microbulbifer arenaceous)中克隆到一个β-1,3(4)-葡聚糖酶基因,在大肠杆菌中可溶表达,研究其相关酶学性质。【方法】以沙质微泡菌(Microbulbifer arenaceous)基因组DNA为模板,克隆一个β-1,3(4)-葡聚糖酶基因(MaGlu16A),构建重组表达载体p ET-28a-MaGlu16A并在大肠杆菌BL21(DE3)中诱导表达,通过Ni-NTA亲和层析纯化后进行酶学性质研究。【结果】MaGlu16A的最适pH和最适温度分别为pH 6.0和40°C,在pH 5.0-10.5和35°C以下稳定。对EDTA具有较高的抵抗性,在1 mmol/L和10 mmol/L EDTA浓度下仍保持99.3%和82.5%的酶活力。该酶能够有效水解可得然多糖、昆布多糖、大麦葡聚糖、地衣多糖、燕麦葡聚糖和酵母葡聚糖,水解产物主要为葡萄糖、二糖、三糖和四糖。【结论】海洋细菌沙质微泡菌(Microbulbiferarenaceous)来源β-1,3(4)-葡聚糖酶的克隆表达及酶学性质的测定为β-葡聚糖酶的挖掘及β-葡寡糖的制备奠定了基础。     

一种简便、高效、经济的从凝胶中回收DNA的方法

目的:尝试一种简便、高效的从凝胶中回收DNA的方法。方法:在Eppendorf管的管底用注射器扎孔,将一小团用Eppendorf管融化后拉成的细丝放入管中,把含有DNA的凝胶放在细丝上,离心,收集从管底流出的液体,经酚氯仿抽提后用乙醇沉淀DNA。结果:经过简单的离心即可近乎100%地回收凝胶中的DNA。结论:使用该方法从琼脂糖凝胶回收DNA,操作简单,回收率高,无其他试剂污染。     

Effects of a Ficoll-agarose system on early division and development of mesophyll protoplasts of winter oilseed rape (Brassica napus L.)

A method is described for regenerating callus from mesophyll protoplasts of a winter variety of Brassica napus. The method combines the use of Ficoll in an initial liquid medium, enhancing early protoplast division and cell colony formation, with a transfer to an agarose system after 10 days culture to give rapid microcalli formation. Further transfers resulted in callus regeneration and the initiation of organogenesis.     

Immobilization and stabilization of d-hydantoinase from Vigna angularis and its use in the production of N-carbamoyl-d-phenylglycine. Improvement of the reaction yield by allowing chemical racemization of the substrate

This work reports the immobilization of a multimeric d-hydantoinase (DHTase) from Vigna angularis (E.C. 3.5.2.2.) on agarose beads activated with glyoxyl groups aiming to improve its stability via multipoint covalent attachment. The final reduction with sodium borohydride resulted in a drop in enzyme activity that could be decreased by adding Zn²⁺ or Mg²⁺. The optimal preparation with high activity (58 % recovered activity) and stability (around 86-fold more stable than the free enzyme) was obtained by DHTase immobilization on glyoxyl agarose for 24 h at 25 °C and pH 10.05, and a borohydride reduction step in the presence of 10 mM Zn²⁺ (DHTase-Glx). The enzyme was almost fully immobilized on glyoxyl agarose (19.8 mg/g of support) when offering 20 mg/g. This immobilized biocatalyst was used to catalyze the hydrolysis of d,l-phenylhydantoin under substrate racemization conditions, which produced 99 % of N-carbamoyl-d-phenylglycine after 9 h reaction.     

中国鲎凝集素的分离纯化及性质研究

 经N-乙酰氨基葡萄糖交联琼脂糖亲和层析及以交联琼脂糖介质的高效液相分子筛层析,从中国鲎细胞溶解物中分离纯化了一种凝集素,其活性比原料鲎试剂提高128倍。鲎凝集素SDS电泳时表现出分子量为69000,和72000的二个亚基。N-乙酰氨基葡萄糖、D-半乳糖,D-甘露糖及岩藻糖等对鲎凝集素凝集鸡红细胞的活性有显著抑制作用,加热60℃,10分钟可使凝集素活性基本丧失。CaCl_2为凝集素活性所必需。鲎凝集素与肺炎球菌C多糖有沉淀反应。     

l-Malic acid formation by immobilized Saccharomyces cerevisiae amplified for fumarase

The yeast Saccharomyces cerevisiae was amplified for the enzyme fumarase by cloning the single nuclear gene downstream of a strong promoter. The overproducing strain converted fumaric acid to l-malic acid at a rate of 65 mM g⁻¹ h⁻¹ in free cell experiments, and approximately 87% of the fumaric acid was converted to l-malic acid within 45 min. Activity was dependent on the addition of surfactant to the medium, and minimal activity was seen with the wild-type yeast strain. The constructed strain was immobilized in agarose beads (2.4 mm mean diameter) and within agarose microspheres (193 and 871 μm mean diameter). The rate of bioconversion increased with decreasing bead diameter, with similar rates observed with the 193-μm diameter microspheres to that achieved with the free cells. The presence of surfactant was essential for initial activity of the immobilized cells; however, high activity was observed in subsequent experiments in the absence of surfactant. Stable activities over a 48-h period were maintained within the large-diameter agarose beads, while decreasing activities were observed within the agarose microspheres.     

Isolation and culture of Lens culinaris Medik. cv. Eston epicotyl protoplasts to calli

Protoplasts of Lens culinaris Medik. cv. Eston were isolated from epicotyl tissues of seedlings grown on Murashige & Skoog basal medium. For isolating the protoplasts, epicotyl tissues were digested for 12–14 h at 25°C in an isolation mixture (pH 5.7) containing 1% Cellulase RS, 0.5% Driselase, 0.25% Pectolyase Y23, 0.2M calcium chloride, 10 mM mannitol and 10 mM MES. Protoplasts were purified by flotation over 20% sucrose and washed with 0.2 M calcium chloride solution supplemented with 10 mM mannitol. Purified protoplasts were cultured at a density of 10⁵ ml^-1 in agarose (Seaplaque, 0.6%) blocks which were suspended in an identical but liquid KM8P culture medium lacking amino acids, ammonium nitrate, and coconut water but containing 0.35 M glucose and a growth regulator complement of either 2.2 M 2,4-dichlorophenoxyacetic acid (2,4-D), 2.7 M naphthaleneacetic acid (NAA), 2.3 M N-(2-furanylmethyl)-1H-purine-6-amine (kinetin), 2.2 M benzylamino purine (BAP), 2.3 M 2-methyl-4-(1H-purine-6-ylamino)-2-buten-1-ol (zeatin), and 1.4 M gibberellic acid (GA₃), or 5.4 M NAA and 2.2 M each of 2,4-D and BAP. The osmotic potential of the liquid culture medium was gradually reduced over a period of 3 weeks by replacing the spent medium with a fresh medium containing 0.25, 0.1 and 0 M glucose at weekly intervals. About 6% of the dividing protoplasts developed into cell colonies after 3 weeks of culture at 25°C in diffuse light (10 E m^-2s^-1). In 35–42 days the microcolonies were about 1 mm in diameter and developed into calli on transfer to agar-solidified B5 medium supplemented with growth regulators used in the protoplast culture medium and 5 mM glutamine. Attempts to regenerate plants from protoplast-derived calli have so far been unsuccessful.Department of Applied Microbiology and Food Science, University of Saskatchewan     

Transferrin (Tf) polymorphism in wild rabbit, Oryctolagus cuniculus

Evidence for two new alleles (TfC and TfD) at the transferrin locus (Tf) in wild rabbit, Oryctolagus cuniculus, is presented. Blood samples were collected in Continental Portugal (178 individuals), and in the Azores Islands of Terceira (52) and S. Miguel (59). The frequency of TfA, which is the only allele detected up to now in domestic rabbits, varied from 0.20 +/- 0.13 to 0.95 +/- 0.05 in the populations sampled in Continental Portugal. In the island populations sampled the frequency of TfA was greater than 0.8.     

Mitochondrial DNA recombination in Brassica campestris

The structure of the mitochondrial genome in plants is unclear, but appears to consist of mostly linear DNA with some other structures, including branched molecules and subgenomic circles. Mitochondrial DNA (mtDNA) recombination was analyzed in Brassica campestris, which has one of the smallest mitochondrial genomes (218 kb) in higher plants. Field-inversion gel electrophoresis (FIGE) separated mtDNA into discrete populations that each represents the entire genome. Electron microscopy revealed large, mostly linear molecules trapped in the wells, slower migrating populations with mostly linear DNA and a low level of circular and networked mtDNA molecules of 10–140 kbp, and a fast migrating population of 10–50 kbp linear mtDNA. Some smaller than genome size circular molecules and circles with tails were observed, and may represent recombination or rolling circle replication intermediates. Hybridization of end-labeled mtDNA suggests there may be specific ends (or recombination hotspots) for some linear molecules. Analysis of mtDNA enriched by BND-cellulose and separated by two-dimensional agarose gel electrophoresis shows the presence of complex recombination structures and the presence of significant single-stranded regions in mtDNA. These findings provide further evidence that DNA recombination contributes to the complex structure of mtDNA in plants.     

Agarose as a suitable substrate for use in the study of Al dynamics in the rhizosphere

Because of experimental difficulties, few authors have studied the dynamics of aluminium in the rhizosphere. The aim of this paper is to present a suitable method for studying rhizosphere Al dynamics. It is based on the use of agarose as a substrate for plant growth. Agar and agarose gels are often used in rhizosphere studies, but most are poorly characterized and occasionally give rise to experimental artefacts, especially with low mobility elements like Al. The results reported here show that agarose is a relatively pure substrate, nearly devoid of phosphorus and other Al-complexing substances. Aqueous extracts of agarose also exhibit Al phytotoxicity equivalent to that of a nutrient solution. Since this substrate has the properties of a variable charge exchange complex, it can be considered as a physico-chemical model for organic matter. Finally, its Al adsorption capacity is high enough for the Al reserve in the substrate not to exert a limiting effect on plants and low enough to allow accurate measurement of Al depletion in the rhizophere.     

Two-dimensional restriction mapping by digestion with restriction endonucleases of DNA in agarose and polyacrylamide gels

We have studied with a number of bacterial restriction enzymes the conditions for digestion of DNA in agarose and polyacrylamide gels. The restriction endonucleases HpaII, MspI, HaeIII, HindIII, TaqI, HhaI, AluI, BamHI, EcoRI and SalI are capable of digesting DNA in agarose gels of low electroendosmosis and low sulfate concentration. All enzymes, except BamHI, are also capable of digesting DNA in polyacrylamide gels. With this method, rapid two-dimensional restriction mapping of genomes with low and high sequence complexity is possible.