水稻直链淀粉和蛋白质突变系筛选及其与主要农艺性状的关联分析

研究利用重离子辐照杂交籼稻9311创建农艺性状突变体库,使用化学方法筛选直链淀粉、蛋白质突变材料,并分析籽粒品质性状与农艺性状之间的相关性,为后续筛选直链淀粉、蛋白质突变体工作奠定基础。结果显示:在169份直链淀粉、蛋白质突变体中,直链淀粉含量变幅范围是7.64%~32.37%,其中高含量直链淀粉突变体材料有11份,低含量直链淀粉突变体材料有5份;蛋白质含量变幅范围是7.05%~13.79%,其中高蛋白突变体有34份,低蛋白突变体有3份。从169份突变体中筛选出直链淀粉、蛋白质含量都有梯度差异的突变体材料,筛选出材料的农艺性状分析结果表明:在直链淀粉、蛋白质突变体材料的农艺性状中,每穗实粒数、有效穗数、结实率和株高这四个农艺性状与籽粒品质性状间有关联,变异系数分别为37.53%、30.72%、24.70%、15.38%。相关性结果表明:直链淀粉含量和蛋白质含量呈负相关,直链淀粉含量与农艺性状呈正相关,蛋白质与农艺性状呈负相关,其中蛋白质含量和每穗实粒数、结实率呈极显著负相关,相关系数分别为-0.504、-0.592。     

粳稻穗角与稻米品质的相关性及稻米品质遗传分析

测定了粳稻直立穗品种丙8979与弯曲穗品种C堡杂交组合的P1、P2及其重组自交系349个株系的穗角和10个稻米品质性状, 分析了穗角与稻米品质性状之间的相关性, 并运用主基因+多基因混合遗传模型, 对稻米品质10个性状进行了遗传分析。结果表明,穗角与糙米率、整精米率、垩白粒率、垩白度、糊化温度、胶稠度和直链淀粉含量均无显著相关; 与精米率呈显著正相关(r=0.124*); 与粒长和长宽比均呈极显著正相关(相关系数分别为0.470**和0.241**)。糙米率、精米率和直链淀粉含量均受2对主基因+多基因控制, 2对主基因具有累加作用和加性×加性的上位性作用; 整精米率、粒长、长宽比和胶稠度受2对加性-上位性主基因+多基因控制;垩白粒率、垩白度和糊化温度均受3对加性-上位性主基因+多基因控制。糙米率、精米率、整精米率、垩白粒率、垩白度和糊化温度6个品质性状以主基因遗传为主,粒长、长宽比、胶稠度和直链淀粉含量4个性状以多基因遗传为主。     

江苏省直立穗型粳稻品种主要农艺性状和品质性状分析

通过对江苏省淮北稻区种植的主要粳稻品种品质状况和近十年来育成的直立穗型粳稻品种(系)主要品质和农艺性状的分析,发现前期育成直立穗型粳稻品种相时半直立穗型粳稻品种加工品质低,垩白率高和垩白度大,蛋白质含量高;而近期育成直立穗型粳稻品种在上述品质指标上有了较大改进,食味品质也有了显著提高.在主要农艺性状中,近期育成品种呈现每穗总粒数上升、穗长变长、着粒密度下降趋势,产量水平的提高与每穗粒数的增加有着紧密相关.     

国内部分玉米地方品种的品质与农艺性状的表型多样性分析

以710份玉米地方品种为材料,采用随机区组设计,研究了其在脂肪、蛋白质与淀粉等品质性状以及株高、穗长等农艺性状上的表型多样性,分析了这些研究材料的表型多样性在地理来源上的分布.结果表明:(1)平均油分含量4.92%,达到高油3、2和1等级的材料各11、2和3份,地区间差异不显著;(2)平均蛋白质含量12.55%,96%的材料达到食用玉米1等级蛋白质舍量,地区间差异显著;(3)平均淀粉含量70.88%,所有材料均未达高淀粉玉米品种审定标准;(4)株高、穗位高和雄穗分枝数等3个植株性状的变异程度大,地区间差异显著,华南、西南和西北的植株高大,雄穗发达,而华北和东北的植株矮小,雄穗分枝数较少;(5)在3个果穗性状中,变异程度大小依次是穗长、穗行数和穗粗,地区间差异显著,筛选到长穗、粗穗和多穗行材料各5、1和3份;(6)不同地区和不同性状的多样性指数均有显著差异,以华南、华东和西南玉米材料的多样性水平较高.所有研究材料的表型多样性分析结果显示这些材料的脂肪与蛋白质含量较高,淀粉舍量较低;华南、华东和西南种质的多样性水平明显高于其他地区的种质.     

糯玉米种质品质性状鉴定和SSR标记遗传多样性分析

对165份来源不同的糯玉米农家种和自交系的穗粒性状和淀粉品质性状进行了鉴定,并利用60对SSR标记进行了遗传多样性分析。结果表明,165份糯玉米种质穗长、秃顶长、行数、行粒数和穗粗变异较大,粗淀粉含量、支链淀粉含量和淀粉糊化特性RVA特征谱带值各指标变异丰富。60 对SSR引物在165份材料间共检测到281个等位基因变异,PCR扩增片段大小介于90～690bp,每对引物检测到2～9个等位基因,平均为4.68个;每对SSR 引物的多态信息量( PIC) 在0.332～0. 860之间,平均为0. 690。利用UPGMA 聚类分析方法将供试种质自交系分为3类,划分结果基本符合品系的来源情况,生产应用的多数糯玉米自交系材料与我国西南地区糯玉米地方品种材料具有较远的亲缘关系。显示出165份糯玉米种质具有丰富的遗传多样性,可为糯玉米杂优利用和遗传改良提供遗传基础。     

水稻外观品质的数量性状基因位点分析

利用由98个家系组成的Nipponbare(粳)／Kasalath(秒)∥Nipponbare回交重组自交系(backcross inbred lines,BILs)群体(BC1F9)及其分子连锁图谱,采用复合区间作图的方法,在2个不同年份对粒长、粒宽、粒形、垩白率、垩白大小、垩白度和透明度等7个稻米外观品质性状的数量性状基因位点(Quantiative trait loci,QTL)进行了定位分析。共定位到33个四QTLs,单个性状QTL数目在4-7个之间,以垩白率最多,为7个;粒长和垩白大小次之,为5个;其他性状均为4个,表明该组合外观品质是由多基因控制的数量性状。单个QTL对性状变异解释率粒长为6．2％-15．2％,粒宽为8．3％-32．5％,长宽比为6．8％-19．8％,垩白率为6．4％-28．5％,垩白大小为6．1％-16．9％,垩白度为9．3％-17．2％,透明度为5．6％-25．2％．QTL在染色体上成集中分布的特点,第3染色体C1488-C563、第5染色体R830-R3166和R1436-R2289、第6染色体R2147-R2171均有3个以上的QTLs分布。比较2年的检测结果表明,外观品质性状的QTL定位都受环境影响,但不同性状受影响的程度差异很大。粒长和粒形的QTL定位受环境影响很小,垩白率、垩白大小和垩白度的QTL定位受环境影响很大。     

密穗型水稻品种籽粒垩白性状改良研究

采用籽粒长宽比较大、穗部着粒密的散穗型材料(EG23)改良粳稻密穗型品种的籽粒垩白性状.结果表明,经改良后得到的密穗型品系EA6,与原亲本浙粳20比较,其穗部长度缩短,每穗总粒数增加,着粒密度增大,而籽粒垩白特性得到明显的改善,表明在穗部长度和着粒结构未得到改良的情况下,调节籽粒长宽比对改善密穗型品种籽粒垩白性状具有可能性.穗部不同粒位籽粒垩白性状改良的效果不同,穗顶部和穗中部的改良效果明显优于穗基部.设计的4个不同杂交配组方式中,以反回交配组方式(浙粳20/ EG23//浙粳20)选育效果最好.EA6具有较好的农艺性状,既可作为优异种质资源利用,也可直接应用于生产.这一结果从育种实践上较好地协调了密穗型品种高产与优质的矛盾,对于培育既有密穗型的高产株型又有优良籽粒外观品质的水稻品种具有重要意义.     

杂交粳稻品质与产量性状间的典范相关分析──杂交粳稻品质性状的遗传研究Ⅳ

由38个杂交粳稻及其12个亲本的6个产量性状和13个品质性状的典范相关分析得出：两者以稻谷重、糙米重、精米重、每穗实粒数、单株产量间相关极显著．其它性状关系小．故对产量及其余品质性状同步选择可加速育成优质高产组合．提高产量宜着力增加穗数和结实粒数,籽粒不且过大过宽过重．改良品质以糙米率、糙米长宽比、垩白率、透明度、食味最为关键,并互为正向关系,可同时改良,其中透明度、垩白率又是影响食味的主要直观性状．     

云南软米低直链淀粉含量及其相关性状遗传分析

IR36×八宝米F2单株直链淀粉含量与农艺、米粒外观性状相关性及其遗传分析表明,18个性状有9个性状与直链淀粉含量呈极显著(P＜0.01)或显著(P＜0.05)相关性,尤其直链淀粉含量与垩白长(0.353**)、株高(-0.242**)、结实率(0.235**)、第一节间长(0.195**)的相关系数达极显著水平(P＜0.01),直链淀粉含量9%～15%是籼型软米杂种后代的重要指标;八宝米的垩白长和第一节间长均表现部分显性主效基因,籼型八宝米低直链淀粉基因和IR36的矮秆基因均为1对隐性主效基因控制,表明八宝米的优质基因易于转育或表达,可广泛用于水稻优质米育种;用SSR标记将软米基因有关的低直链淀粉含量定位于第6染色体上与RMl90连锁,其遗传距离为18.8cM.     

生育前期遮光对水稻后期功能叶生长及稻米品质的影响

以2个不同直链淀粉含量的水稻品种为材料,研究了生育前期(插秧至幼穗分化期)遮光对水稻后期功能叶生长及稻米品质的影响。结果表明,前期遮光处理后,水稻剑叶面积明显增大,功能叶的碳、氮代谢水平提高;2个品种的籽粒直链淀粉积累过程受到的影响不同,而蛋白质积累受到的影响均一致(即百分含量下降幅度增大);糙米率有所降低,但未达到显著水平;精米率和垩白率极显著下降;整精米率和直链淀粉含量显著或极显著升高;粒长、粒宽和蛋白质含量无显著性变化,但蛋白质含量表现为下降趋势;2个品种间存在着差异。     

Local perceptions of climate change validated by scientific evidence in the Himalayas

The Himalayas are assumed to be undergoing rapid climate change, with serious environmental, social and economic consequences for more than two billion people. However, data on the extent of climate change or its impact on the region are meagre. Based on local knowledge, we report perceived changes in climate and consequences of such changes for biodiversity and agriculture. Our analyses are based on 250 household interviews administered in 18 villages, and focused group discussions conducted in 10 additional villages in Darjeeling Hills, West Bengal, India and Ilam district of Nepal. There is a widespread feeling that weather is getting warmer, the water sources are drying up, the onset of summer and monsoon has advanced during last 10 years and there is less snow on mountains than before. Local perceptions of the impact of climate change on biodiversity included early budburst and flowering, new agricultural pests and weeds and appearance of mosquitoes. People at high altitudes appear more sensitive to climate change than those at low altitudes. Most local perceptions conform to scientific data. Local knowledge can be rapidly and efficiently gathered using systematic tools. Such knowledge can allow scientists to test specific hypotheses, and policy makers to design mitigation and adaptation strategies for climate change, especially in an extraordinarily important part of our world that is experiencing considerable change.     

How far is it to your local? A survey on local provenance use in New South Wales

Summary The decision as to where to source seed is one of the most critical in restoration projects. Locally collected seed is often recommended, or even contractually required, because it is assumed to be adapted to local conditions and therefore result in superior survival and growth rates, conferring a greater probability of restoration success. The perceived advantages, which include retaining the genetic ‘integrity’ of the site, are centred around the avoidance of outbreeding depression and hybridization. These traditional reasons for using locally collected seed need to be reconsidered in the light of rapidly changing climatic and other environmental conditions; plants that are locally adapted now may not be locally adapted in future. Understanding the current usage of local provenance is pivotal to discussions on its appropriateness under climate change. We present the results of a survey of restoration practitioners in New South Wales on attitudes and practices in relation to the use of local provenance. We found that whilst the majority of practitioners preferentially use local provenance seeds, the actual definition of local provenance varied amongst respondents. Whilst 80% of participants believe that projections of future climate change are relevant to restoration projects, there is an apparent reluctance to actively manage for this eventuality. However, many respondents are in favour of a review of seed‐sourcing policy/guidelines to allow for the inclusion of non‐local provenance material. Implications of the survey for potential changes to guidelines to better prepare for anticipated changing conditions are discussed.     

Intersexual competition as an explanation for sex-ratio and dispersal biases in polygynous species

In polygynous mammals, it is commonly observed that both sex ratios at birth and dispersal are male biased. This has been interpreted as resulting from low female dispersal causing high female local resource competition, which would select for male-biased sex ratios. However, a female-biased sex ratio can be selected despite lower female than male-biased dispersal. This will occur if the low female dispersal is close to the optimal dispersal rate, while the male dispersal is not close to the optimal dispersal rate. The actual outcome depends on the joint evolution of sex-biased dispersal and sex ratio. Earlier analyses of joint evolution imply that there will be no sex-ratio nor dispersal biases at the joint evolutionarily stable strategy, thus they do not explain the data. However, these earlier analyses assume no intersexual competition for resources. Here, we show that when males and females compete with each other for access to resources, male-biased dispersal will be associated with male-biased birth sex ratio, as is commonly observed. A trend toward male-biased birth sex ratios is also expected if there is intersexual local resource competition and if birth sex ratio is constrained so that it cannot depart from balanced sex ratio.     

TESTS OF SEX ALLOCATION THEORY IN SIMULTANEOUSLY HERMAPHRODITIC ANIMALS

Sex allocation is a crucial life-history parameter in all sexual organisms. Over the last decades a body of evolutionary theory, sex allocation theory, was developed, which has yielded capital insight into the evolution of optimal sex allocation patterns and adaptive evolution in general. Most empirical work, however, has focused on species with separate sexes. Here I review sex allocation theory for simultaneous hermaphrodites and summarize over 50 empirical studies, which have aimed at evaluating this theory in a diversity of simultaneous hermaphrodites spanning nine animal phyla. These studies have yielded considerable qualitative support for several predictions of sex allocation theory, such as a female-biased sex allocation when the number of mates is limited, and a shift toward a more male-biased sex allocation with increasing numbers of mates. In contrast, many fundamental assumptions, such as the trade-off between male and female allocation, and numerous predictions, such as brooding limiting the returns from female allocation, are still poorly supported. Measuring sex allocation in simultaneously hermaphroditic animals remains experimentally demanding, which renders evaluation of more quantitative predictions a challenging task. I identify the main questions that need to be addressed and point to promising avenues for future research.     

Ephemeropteran community structure and spatial stability of local populations of the major species group in the Keumho River

This study was conducted to analyze the community structure of mayflies and stabilizing points for the local populations in relation to longitudinal changes in the Keumho River, Korea. A total of 22 ephemeropteran species occurred in the main riverine system during the sampling period of 3 years. The results indicated that Baetis fuscatus (mean density of 117.3 individuals/m²), Ecdyonurus levis (54.1), Uracanthella rufa (51.3) and Caenis KUa (49.9) comprised the major species group of the ephemeropteran community. The results of statistical analyses showed that these four species were distinguished from the others in terms of their mean densities. Longitudinal patterns based on total species numbers and numbers of individuals were characterized into three phases. A new approach was applied to analyze stabilized points for local populations based on the River Continuum Concept and density‐dependent mechanisms among local populations in a metapopulation. Stabilized local populations of B. fuscatus and E. levis occurred coincidentally at two points that were approximately 45 and 75 km away from the Youngchun Dam. Caenis KUa was locally stabilized at two points that were 40 and 60 km away from the dam. Uracanthella rufa showed only one stabilized local population at a point approximately 80 km away from the dam. The diversity index for the ephemeropteran community was compared with that calculated for the benthic macroinvertebrate community, and their similarity is discussed.     

Protein homeostasis and synaptic plasticity

It is clear that de novo protein synthesis has an important function in synaptic transmission and plasticity. A substantial amount of work has shown that mRNA translation in the hippocampus is spatially controlled and that dendritic protein synthesis is required for different forms of long‐term synaptic plasticity. More recently, several studies have highlighted a function for protein degradation by the ubiquitin proteasome system in synaptic plasticity. These observations suggest that changes in synaptic transmission involve extensive regulation of the synaptic proteome. Here, we review experimental data supporting the idea that protein homeostasis is a regulatory motif for synaptic plasticity.     

新型图形硬件支持下的动态规划局部比对算法加速研究

为探索准确、高效、低成本、通用性并存的生物序列局部比对方法。将点阵图算法、启发式算法等各种序列局部比对算法中准确性最高的动态规划局部比对算法在计算机中实现,并通过流式模型将其映射到图形硬件上以实现算法加速,再通过实例比对搜索数据库完成比对时间和每秒百万次格点更新（MCUPS）性能值评测。结果表明,该加速算法在保证比对准确性的同时,能显著提升比对速度。与目前最快的启发式算法相比,比对平均加速为14.5倍,最高加速可达22.9倍。     

Population genetic evidence for cold adaptation in European Drosophila melanogaster populations

We studied Drosophila melanogaster populations from Europe (the Netherlands and France) and Africa (Rwanda and Zambia) to uncover genetic evidence of adaptation to cold. We present here four lines of evidence for genes involved in cold adaptation from four perspectives: (i) the frequency of SNPs at genes previously known to be associated with chill‐coma recovery time (CCRT), startle reflex (SR) and resistance to starvation stress (RSS) vary along environmental gradients and therefore among populations; (ii) SNPs of genes that correlate significantly with latitude and altitude in African and European populations overlap with SNPs that correlate with a latitudinal cline from North America; (iii) at the genomewide level, the top candidate genes are enriched in gene ontology (GO) terms that are related to cold tolerance; (iv) GO enriched terms from North American clinal genes overlap significantly with those from Africa and Europe. Each SNP was tested in 10 independent runs of Bayenv2, using the median Bayes factors to ascertain candidate genes. None of the candidate genes were found close to the breakpoints of cosmopolitan inversions, and only four candidate genes were linked to QTLs related to CCRT. To overcome the limitation that we used only four populations to test correlations with environmental gradients, we performed simulations to estimate the power of our approach for detecting selection. Based on our results, we propose a novel network of genes that is involved in cold adaptation.