同域分布垂穗披碱草和达乌力披碱草遗传多样性和遗传结构分析

披碱草属(Elymus L.)是禾本科(Poaceae)小麦族(Triticeae)中的一个多年生属,该属在青藏高原地区有广泛分布,多数物种是草原和草甸的组成成分,许多种类为品质优良的牧草。垂穗披碱草(E.nutans)和达乌力披碱草(E.dahuricus)同为禾本科小麦族披碱草属异源六倍体物种,染色体组组成皆为StYH。为探究垂穗披碱草遗传多样性形成的内在机制,该研究利用微卫星(SSR)分子标记,对采自青藏高原地区同域分布的垂穗披碱草和达乌力披碱草两个居群共58个个体进行遗传多样性和遗传结构分析。结果表明:8对引物在垂穗披碱草和达乌力披碱草扩增条带分别为163条和124条,多态性位点百分率(PPB)分别为89.71%和76.07%,多态性信息含量(PIC)分别介于0.583~0.929和0.524~0.830之间。垂穗披碱草遗传多样性(H_e=0.69,I=1.34,P_p=100%)高于达乌力披碱草(H_e=0.53,I=0.80,P_p=93.75%);同域分布的垂穗披碱草和达乌力披碱草居群,垂穗披碱草呈现出更高的遗传多样性。AMOVA分子变异显示,两个物种居群内遗传变异分别80.92%和63.62%,但居群间遗传分化水平较低。遗传结构分析揭示两个物种间有基因流存在。综合分析结果认为,该地区种间杂交基因渗透引起的种内遗传分化,在这两个物种多样性形成中可能起着重要作用。     

青海高原披碱草属种间天然杂种的细胞学鉴定

利用重复序列探针染色体荧光原位杂交（FISH）和基因组原位杂交（GISH）技术,对采自青海高原披碱草属种间天然杂种进行细胞学鉴定,同时结合物种分布及形态学特征,共揭示6种不同天然杂种的类型。第一类为垂穗披碱草（Elymus nutans Griseb.）和鹅观草属（Roegneria C.Koch）物种间的天然杂种,染色体数为35,染色体组成为StStYYH;第二类为垂穗披碱草和达乌力披碱草种（Elymus dahuricus Turcz.ex Griseb.）间杂种,染色体数为42,染色体组成为StStHHYY;第三类为达乌力披碱草和老芒麦（Elymus sibiricus L.）种间杂种,染色体数为35,染色体组成为StStHHY;第四类为垂穗披碱草和糙毛以礼草（Kengilia hirsuta Keng）种间杂种,染色体数为42,染色体组成为StStYYHP;第五类为垂穗披碱草和大颖草（Kengilia grandiglumis Keng）种间杂种,染色体数为42,染色体组成为StStYYHP;第六类为糙毛以礼草和赖草（Leymus secalinus（Georgi） Tzvel.）种间杂种,染色体数为35,染色体组成为StYPNsXm。研究结果为进一步研究披碱草属种间杂交渐渗提供了重要参考资料;同时鉴定出的天然杂种可以作为潜在的种质资源在牧草或生态草育种中加以利用。     

加拿大披碱草×野大麦三倍体杂种染色体的分子原位杂交鉴定

加拿大披碱草与野大麦 2个四倍体多年生禾草杂交产生的属间杂种F1为三倍体 (2n =3x =2 1) ,丢失了与亲本染色体基数相同的 7条染色体。为查明该杂种F1的染色体构成 ,应用基因组分子原位杂交方法 ,将父本(♂ )野大麦基因组 (H1H1H2 H2 )DNA用荧光生物素标记作为探针 ,以母本 (♀ )加拿大披碱草基因组 (SSHCHC)DNA作为封组 ,对杂种F1根尖细胞有丝分裂中期的染色体DNA进行原位杂交。结果表明 :三倍体杂种F12 1条染色体中 ,有 14条出现偏黄色荧光信号 ,来自父本 (♂ )野大麦H1H2 基因组有 7条出现橙红色荧光信号 ,来自母本 (♀ )加拿大披碱草S基因组、加拿大披碱草HC 基因组的 7条染色体丢失。     

川西北高原不同海拔高度披碱草与垂穗披碱草核型分析

目的：为研究不同海拔居群染色体核型变异及进化程度,为披碱草的分类及进化研究提供细胞学资料。方法：以川西北高原6个海拔梯度的披碱草居群和5个海拔梯度的垂穗披碱草居群为材料,采用滴片法制片对染色体进行核型分析。结果：披碱草居群D3057（海拔3 057 m）、D2682（海拔2 682 m）的核型公式为2n=6x=42=42m,为1B型;D2384（海拔2 384 m）核型公式为2n=6x=42=42m(4sat),为1A型;D2143（海拔2 143 m）、D1747（海拔1 747 m）的核型公式为2n=6x=42=40m+2sm,为1B型;D1589（海拔1 589 m）的核型公式为2n=6x=42=36m+6sm,为2B型。垂穗披碱草Y2126（海拔4 050 m）、Y2117（海拔3 800 m）、Y2291a(4 150 m)居群的核型公式为2n=6x=42m,ZY3034（海拔3 200 m）的居群核型公式为2n=6x=40m+2M,Y2122（海拔4 800 m）核型公式为2n=6x=40m+2sm,5个居群的核型类型均为1B型。基于核型对称性与进化指数,披碱草居群D158...     

利用SSR标记对垂穗披碱草和老芒麦进行物种鉴定和遗传变异分析

垂穗披碱草(Elymus nutans)和老芒麦(Elymus sibiricus)皆为花序下垂类披碱草属物种,高海拔地区的E.sibiricus的部分变异类型也具有小穗紧密排列等特征,与E.nutans在形态学性状上具有较多的交叉,造成野外种质资源采集时进行直接的田间鉴定存在困难。本研究利用12对小麦族SSR引物对8份垂穗披碱草和10份老芒麦种质进行遗传变异和物种鉴定分析,UPGMA聚类分析表明供试材料明显可依据物种差异划分成两大类,主向量分析(PCo A)与聚类分析的结果保持一致。种质间遗传相似系数分析和分子方差分析(AMOVA)也表明种间变异远高于种内。另外,本研究筛选出3对引物,ESGS79和ESGS155能够在垂穗披碱草材料中扩增出特异性条带,Xgwm311能够在老芒麦材料中扩增出特异性条带,这3对引物能够作为区分垂穗披碱草和老芒麦的依据,为野外种质资源的收集以及田间育种工作提供指导。     

种间杂种染色体配对所揭示的披碱草属植物StY基因组分化及其进化意义

在同倍体(homoploid)植物杂交-分化的物种形成(speciation)过程中,杂交后代与亲本之间的有效生殖隔离是新物种形成的关键。杂种与亲本在时间、空间、生态环境和基因水平上的隔离,保证了杂种后代的分化和稳定,并逐渐形成新物种。为了研究披碱草属(Elymus)含StY基因组四倍体物种的系统演化关系,本文对来自亚洲不同地理分布区的26种披碱草属植物进行了大规模的种间杂交和杂种F1减数分裂染色体配对行为的分析。结果表明各物种之间有不同程度的杂交亲合力,杂交结实率在各杂交组合之间有较大的变异(在4．8％-100％之间);但各物种之间的杂种F1完全不育。证明各物种之间形成了明显的生殖隔离。种间杂种F1减数分裂中期-I染色体配对分析的结果进一步表明,StY基因组随各披碱草属物种地理分布的不同而有不同程度的分化。来自同一分布区(如东亚或西亚分布区之内)物种的StY基因组分化程度较低,但来自不同分布区(如东亚和西亚)物种之间相同的StY基因组具有显著的分化。表明地理隔离对含StY基因组物种的分化起到了十分重要的作用。通过对种间和种内杂种F1的减数分裂异常现象和染色体配对频率变化规律的分析,作者认为细胞学水平的变化,如基因组同源性的分化和染色体结构的变异等都在杂种后代与亲本之间产生生殖隔离并逐渐形成新物种的进化过程中起到了积极的作用。     

川西北高原12个垂穗披碱草居群的核型研究

以川西北高原12个居群的垂穗披碱草为材料,用光学显微镜观察了各居群材料的染色体,对观测所得数据进行了核型分析。结果显示,12个群体中有3个居群的材料具随体;12个居群的核型公式有5种,其中居群203024、205090和Y2097为2n=6x=34m(2SAT) 8sm,居群202068、205106、Y2091、Y2095、Y2120为2n=6x=38m 4sm,居群205116、205218为2n=6x=36m 6sm,居群205097为2n=6x=32m 10sm,居群205096为2n=6x=30m 12sm;核型可分为两类,其中居群205097、Y2095、Y20973属1B型,其它9个居群均为1A型。结果表明,川西北高原不同居群野生垂穗披碱草在核型上发生了变异。     

拟南芥DNA探针的比较基因组原位杂交揭示的拟南芥与远缘植物基因组间的同源性

采用生物素标记的拟南芥基因组DNA探针在75%杂交严谨度下对双子叶植物番茄、蚕豆和单子叶植物水稻、玉米、大麦的染色体进行了比较基因组荧光原位杂交（comparative genomic in situ hybridization,cGISH）分析,以揭示拟南芥与远缘植物基因组间的同源性.cGISH信号代表了拟南芥基因组DNA中的重复DNA与靶物种染色体上同源序列的杂交.探针DNA在所有靶物种的全部染色体上都产生了杂交信号.杂交信号为散在分布,并呈现随基因组增大,杂交信号增多,且分布更加分散的趋势.所有靶物种的核仁组织区（NOR）都显示了明显强于其他区域的杂交信号,表明拟南芥基因组DNA探针可用于植物NOR的物理定位.在所有的靶物种中,信号主要分布在染色体的臂中间区和末端,着丝粒或近着丝粒区有少数信号分布.大麦染色体显示了与C-和N-带不同的独特的cGISH信号带型,表明此探针可用于不同植物染色体的识别.这些结果表明,拟南芥基因组与远缘植物基因组之间,除rDNA和端粒重复序列外,还存在其它同源的重复DNA;一些重复DNA序列在被子植物分歧进化为单子叶和双子叶植物之前就已存在,虽经历了长期的进化过程,至今在远缘物种之间仍保持了较高的同源性.结果还提示,大基因组中古老而保守的重复DNA在进化过程中发生了明显的扩增.     

St基因组中的CRW同源序列在偃麦草中的FISH分析

为了确定十倍体长穗偃麦草(Thinopyrum ponticum, Liu & Wang)和六倍体中间偃麦草(Th. intermedium, [Host] Barkworth & Dewey )的基因组组成, 根据野生一粒小麦(Triticum boeoticum)着丝粒自主型反转录转座子(CRW)序列设计特异引物, 以二倍体拟鹅观草(Pseudoroegneria spicata, Á Löve )基因组 DNA为模板进行PCR扩增, 筛选到一条St基因组着丝粒区相对特异反转录转座子的部分序列pStC1, 长度为1.755 kb (GenBank登录号: FJ952565), 其中有800 bp与小麦着丝粒反转录转座子(CRW)的LTR区高度同源, 另有小部分片段与其外壳蛋白编码基因(gag)部分同源, 并且包含一段富含AGCAAC碱基的重复序列。以pStC1为探针, 对十倍体长穗偃麦草的FISH检测结果显示其基因组组成为两个St组3个E组(St₁St₂E^eE^bE^x); pStC1与中间偃麦草杂交时, 不仅St基因组上有强烈的荧光信号, 而且E基因组一些染色体的近着丝粒区域也有杂交信号, 说明偃麦草属异源多倍体物种在其形成及进化过程中St与E基因组之间在着丝粒及近着丝粒相关区域可能存在协同进化。     

我国11种披碱草的核型研究

本文报道了中国产的11种披碱草属植物的核型,其中9种为首次报道。结果如下:老芒麦2n=4x=28=24m+4sm(2SAT);披碱草2n=6x=42=36m(2SAT)+6sm(4SAT);青紫披碱草2n=6x=42=32m+10sm(4SAT);垂穗披碱草2n=6x=42=34m+8sm(2SAT);圆柱披碱草2n=6x=42=32m+10sm(2SAT);短芒披碱草2n=6x=42=30m+12sm(4SAT);黑紫披碱草2n=6x=42=36m(6SAT)_1+6sm;毛披碱草2n=6x=42=30m+12sm(6SAT);紫芒披碱草2n=6x=42=22m=12sm(2SAT)+8st(4SAT);肥披碱草2n=6x=42=34m(2SAT)+6sm(4SAT)+2st;麦(?)草2n=6x=42=30m(4SAT)+12sm(2SAT)。     

大鹅观草与蛇河披碱草属间杂种的细胞遗传学研究

为探讨大鹅观草(Roegneria grandis,2n=4x=28)的染色体组组成,为其正确的分类处理提供细胞学依据。该研究通过人工远缘杂交,成功获得3株大鹅观草与蛇河披碱草(Elymus wawawaiensis,2n=4x=28)属间杂种F1植株。杂种植株形态介于两亲本之间,不育。亲本及杂种经I2-IK溶液染色后进行花粉育性检测,结果显示Roegneria grandis和Elymus wawawaiensis的花粉可育,育性高达94.6%和90.5%;杂种F1不育。花粉母细胞减数分裂中期I染色体配对结果显示,亲本花粉母细胞配对正常,均形成14个二价体,以环状二价体为主,Roegneria grandis有频率很低(0.04/细胞)的单价体出现;杂种F1平均每个花粉母细胞形成6.46个二价体,变化范围为5~8;在观察的83个花粉母细胞中,有35.2%的花粉母细胞形成了7个二价体,形成6个二价体的细胞占42.59%,较少细胞形成8个二价体;平均每个细胞形成14.66个单价体,变化范围为10~18;平均每细胞观察到0.14个三价体;杂种花粉母细胞染色体构型为14.66 I+6.46 II+0.14 III;平均每细胞交叉数为9.83,C值为0.35。结果表明:(1)R.grandis与Elymus wawawaiensis有一组染色体组同源的St染色体组,另外一组染色体组不是St或者H染色体组,Roegneria grandis的染色体组组成不是St Stg;(2)较低频率的三价体(平均0.14个/细胞),可能是由于R.grandis的St和Y染色体组间具有一定的同源性,也可能是染色体易位等原因导致,对于Y染色体组的起源还需深入地研究;(3)在不同地理来源的披碱草属和鹅观草属物种中St染色体组同源性不同,R.grandis与来自于北美的Elymus lanceolatus与E.wawawaiensis的St染色体组较与分布于亚洲的E.sibiricus和E.caninus的St染色体组同源性反而更高,其原因还需要进一步地研究。     

Cytogenetical studies on artificial hybrids amongElymus sibiricus,E. dahuricus andAgropyron tsukushiense in the tribe Triticeae,Gramineae

To explore the cytogenetical relationships ofElymus andAgropyron of the tribe Triticeae, Gramineae, two species of AsiaticElymus, E. sibiricus (2n=28) andE. dahuricus (2n=42), and a JapaneseAgropyron, A. tsukushiense (2n=42) were crossed. Pentaploid and hexaploid F₁ hybrids were vigorous. All pollen grains were aborted and none of the hybrids produced seed. For the crossE. sibiricus × A. tsukushiense, the average chromosome pairing per cell at the MI of the PMCs in the F₁ was 16.38 univalents, 8.93 bivalents, 0.25 trivalents and 0.01 quadrivalents; for the crossE. dahuricus × A. tsukushiense, it was 4.41 univalents, 17.67 bivalents, 0.32 trivalents, 0.28 quadrivalents and 0.04 quinquevalents; and for the crossE. dahuricus × E. sibiricus, it was 17.11 univalents, 8.74 bivalents, 0.04 trivalents and 0.07 quadrivalents. From the present results, it is concluded thatE. sibiricus contains one genome andE. dahuricus contains two genomes, which are homologous to those ofA. tsukushiense, and that the third genome ofE. dahuricus might be partially homologous to the remaining genome ofA. tsukushiense. This conclusion is also supported by the cytogenetical analysis ofE. dahuricus × E. sibiricus. Contribution No. 27 from the Plant Germ-plasm Institute, Faculty of Agriculture, Kyoto University, Kyoto, Japan.     

东祁连山灌丛凋落叶水浸提液对垂穗披碱草种子萌发和幼苗生长的影响

为了解灌丛凋落叶在灌草群落结构维持中可能存在的潜在化感作用，以东祁连山3种优势灌木和灌下优势草种垂穗披碱草(Elymus nutans)为供试材料，分析了不同浓度(0.01 g/L、0.025 g/L、0.05 g/L、0.075 g/L、0.1 g/L)的金露梅(Potentilla fruticosa)、川滇柳(Salix rehderiana)、头花杜鹃(Rhododendron capitatum)及灌间草本的凋落叶水浸提液，对垂穗披碱草种子萌发、幼苗形态和生理指标的影响。结果表明：(1)垂穗披碱草种子发芽率与发芽势在金露梅与川滇柳凋落叶浸提液处理下呈“低促高抑”的浓度效应，在灌间草本凋落叶浸提液处理时表现为先升后降，而头花杜鹃凋落叶浸提液处理时均下降，并在浓度超过0.075 g/L时种子不发芽。(2)灌丛凋落叶浸提液对垂穗披碱草幼苗根长与干重均表现出抑制作用，且随浓度增大而增强；金露梅、川滇柳与灌间草本凋落叶浸提液对垂穗披碱草幼苗苗高表现出“低促高抑”的浓度效应；而头花杜鹃凋落叶浸提液处理对垂穗披碱草幼苗鲜重与苗高均呈抑制作用。(3)垂穗披碱草幼苗CAT、SOD活性随着浸提液...     

The distribution, organization and evolution of two abundant and widespread repetitive DNA sequences in the genus Hordeum

The genomic organization and chromosomal distributions of two abundant tandemly repeated DNA sequences, dpTa1 and pSc119.2, were examined in six wild Hordeum taxa, representing the four basic genomes of the genus, by Southern and fluorescence in situ hybridization. The dpTa1 probe hybridized to between 30 and 60 sites on the chromosomes of all five diploid species studied, but hybridization patterns differed among the species. Hybridization of the pSc119.2 sequence to the chromosomes and Southern blots of digested DNA detected signals in Hordeum bulbosum, Hordeum chilense, Hordeum marinum and Hordeum murinum 4x, but not in Hordeum murinum 2x and Hordeum vulgare ssp. spontaneum. A maximum of one pSc119.2 signal was observed in the terminal or subterminal region of each chromosome arm in the species carrying this sequence. The species carrying the same I-genome differed in the presence (Hordeum bulbosum) or absence (Hordeum spontaneum) of pSc119.2. The presence of pSc119.2 in the tetraploid cytotype of Hordeum murinum, but its absence in the diploid cytotype, suggests that the tetraploid is not likely to be a simple autotetraploid of the diploid. Data about the inter- and intra-specific variation of the two independent repetitive DNA sequences give information about both the interrelationships of the species and the evolution of the repetitive sequences. Received: 17 March 1999 / Accepted: 16 June 1999     

Physical mapping of repetitive sequences and genome analysis in six Elymus species by in situ hybridization

Genome constitution and genetic relationships between six Elymus species were assessed by physical mapping of different repetitive sequences using a technique of sequential fluorescence in situ hybridization and genomic in situ hybridization.The six Elymus species are all naturally growing species in northwest China,namely,E.sibiricus,E.nutans,E.barystachyus,E.xiningensis,E.excelsus,and E.dahuricus.An StStHH genome constitution was revealed for E.sibiricus and StStHHYY for the remainder species.Each chromosome could be clearly characterized by physical mapping with 18S-26S rDNA,5S rDNA,Afa-family,and AAG repeats,and be allocated to a certain genome by genomic in situ hybridization.Two 5S rDNA sites,each in the H and St genomes,and three 18S-26S rDNA sites,two in the St genome and one in the Y genome,were uncovered in most of the species.The strong Afa-family hybridization signals discriminated the H genome from the St and Y genomes.The H and Y genome carried more AAG repeats than St.A common non-Robertsonian reciprocal translocation between the H and Y genomes was revealed in E.barystachyus,E.xiningensis,E.excelsus and E.dahuricus.Comparison of molecular karyotypes strongly suggests that they can be classified into three groups,namely,E.sibiricus,E.nutans,and others.     

Genetic variation and geographical divergence in Elymus nutans Griseb. (Poaceae: Triticeae) from West China

Elymus nutans Griseb. as an important forage grass and gene pools for improving cereal crops, widely distributes in west China. However, little is known about its genetic and geographical patterns. Inter-simple sequence repeat (ISSR) markers were applied to assess genetic diversity and geographical divergence among 63 E. nutans accessions from west China. The cluster analysis separated the accessions into several groups with geographical origins. The molecular variance analysis (AMOVA) showed that the proportion of variance explained by within- and among-geographical group diversity was 43.2% and 56.8%, respectively. Based on pairwise genetic distances (Φ_ST) between geographical groups, the relationships were congruent with the cluster of accessions. The distinct geographical divergence of E. nutans was revealed between Qinghai-Tibet Plateau and Xinjiang. The ecogeographical conditions such as climate and mountain ranges and elevation behaved as the crucial factors for genetic divergence. Furthermore, the study also indicated that Qinghai-Tibet Plateau might be the diversity differentiation center of E. nutans. The result will facilitate the breeding program and germplasm collection and conservation.     

Relationships between species ofLeymus,Psathyrostachys, andHordeum (Poaceae,Triticeae) inferred from Southern hybridization of genomic and cloned DNA probes

We have used total genomic DNA as a probe to size-fractionated restriction enzyme digests of genomic DNA from a range ofTriticeae species from the generaLeymus Hochst.,Psathyrostachys Nevski, andHordeum L., and hybrids betweenHordeum andLeymus to investigate their taxonomic relationships. Genomic Southern hybridization was found to be an effective and simple way to assess the distribution and diversity of essentially species-specific and common, repetitive DNA sequences, and is hence especially useful in evolutionary studies. The DNA sequences ofH. vulgare seem to diverge substantially from those ofH. brachyantherum, H. lechleri, H. procerum, andH. depressum. The genome ofThinopyron bessarabicum shows little homology to those of theLeymus species investigated, confirming thatT. bessarabicum is not an ancestral genome inLeymus. Although the genomes ofLeymus andPsathyrostachys share substantial proportions of DNA sequences, they include divergent repeated sequences as well. Hybridization with a ribosomal DNA probe (pTa 71) showed that the coding regions containing structural genes encoding the 18 S, 5.8 S, and 26 S ribosomal RNA were conserved among the species investigated, whereas the intergenic spacer region was more variable, presenting different sizes of restriction fragments and enabling a classification of the species. The rye heterochromatin probe pSc 119.2 hybridized to DNA fromH. lechleri andT. bessarabicum, but not to DNA from the other species investigated.     

药用植物华重楼(黑药花科)叶绿体全基因组研究

为探究华重楼(Paris polyphylla var. chinensis)的叶绿体基因组特征,利用叶绿体系统发育基因组学方法,对华重楼与其它百合目植物的叶绿体全基因组进行了比较。结果表明,华重楼的叶绿体全基因组长158307 bp,由4个区组成,包括2个反向重复区(IRA和IRB,27473 bp)、1个小单拷贝区(SSC,18175 bp)和1个大单拷贝区(LSC,85187 bp)。其叶绿体基因组有115个基因,包括81个编码蛋白质基因、30个转运RNA基因和4 个核糖体RNA基因。11种百合目植物的叶绿体全基因组的基因组成和基因顺序相似。华重楼的cemA基因是假基因,其起始密码子后有多聚核苷酸poly(A)及CA双核苷酸重复序列,编码序列中出现多个终止密码子, 且与北重楼(Paris verticillata)的cemA编码序列中的终止密码子位置不同。因此,华重楼叶绿体基因组比较保守;cemA结构及假基因化现象可能具有重要的进化与系统发育信息,其编码序列中的终止密码子可以区分华重楼和北重楼。     

赤桉ACT1和ACT2基因的克隆与生物信息学分析

为了解赤桉(Eucalyptus camaldulensis)肌动蛋白(Actin)在生长发育过程中的功能,根据赤桉幼苗转录组数据库中的肌动蛋白基因序列,从赤桉嫩叶中克隆了2条Actin基因片段,并利用RACE技术获得Actin基因的全长cDNA,分别命名为ECACT1和EC-ACT2基因。生物信息学分析表明,这两条基因的全长cDNA分别为1533 bp和1387 bp,均含有1个编码377个氨基酸的开放阅读框。经比对分析,赤桉Actin蛋白的氨基酸序列与其他植物Actin蛋白的具有较高的相似性,并且具有Actin蛋白特有的保守序列和相关特征。因此推测这两条基因对桉树的生长发育具有一定的调控作用。