Seasonal Dynamics of Microbial Community Composition and Function in Oak Canopy and Open Grassland Soils

Soil microbial communities are closely associated with aboveground plant communities, with multiple potential drivers of this relationship. Plants can affect available soil carbon, temperature, and water content, which each have the potential to affect microbial community composition and function. These same variables change seasonally, and thus plant control on microbial community composition may be modulated or overshadowed by annual climatic patterns. We examined microbial community composition, C cycling processes, and environmental data in California annual grassland soils from beneath oak canopies and in open grassland areas to distinguish factors controlling microbial community composition and function seasonally and in association with the two plant overstory communities. Every 3 months for up to 2 years, we monitored microbial community composition using phospholipid fatty acid (PLFA) analysis, microbial biomass, respiration rates, microbial enzyme activities, and the activity of microbial groups using isotope labeling of PLFA biomarkers (¹³C-PLFA). Distinct microbial communities were associated with oak canopy soils and open grassland soils and microbial communities displayed seasonal patterns from year to year. The effects of plant species and seasonal climate on microbial community composition were similar in magnitude. In this Mediterranean ecosystem, plant control of microbial community composition was primarily due to effects on soil water content, whereas the changes in microbial community composition seasonally appeared to be due, in large part, to soil temperature. Available soil carbon was not a significant control on microbial community composition. Microbial community composition (PLFA) and ¹³C-PLFA ordination values were strongly related to intra-annual variability in soil enzyme activities and soil respiration, but microbial biomass was not. In this Mediterranean climate, soil microclimate appeared to be the master variable controlling microbial community composition and function.     

Influence of Drying–Rewetting Frequency on Soil Bacterial Community Structure

Soil drying and rewetting represents a common physiological stress for the microbial communities residing in surface soils. A drying–rewetting cycle may induce lysis in a significant proportion of the microbial biomass and, for a number of reasons, may directly or indirectly influence microbial community composition. Few studies have explicitly examined the role of drying–rewetting frequency in shaping soil microbial community structure. In this experiment, we manipulated soil water stress in the laboratory by exposing two different soil types to 0, 1, 2, 4, 6, 9, or 15 drying–rewetting cycles over a 2-month period. The two soils used for the experiment were both collected from the Sedgwick Ranch Natural Reserve in Santa Ynez, CA, one from an annual grassland, the other from underneath an oak canopy. The average soil moisture content over the course of the incubation was the same for all samples, compensating for the number of drying–rewetting cycles. At the end of the 2-month incubation we extracted DNA from soil samples and characterized the soil bacterial communities using the terminal restriction fragment length polymorphism (T-RFLP) method. We found that drying–rewetting regimes can influence bacterial community composition in oak but not in grass soils. The two soils have inherently different bacterial communities; only the bacteria residing in the oak soil, which are less frequently exposed to moisture stress in their natural environment, were significantly affected by drying–rewetting cycles. The community indices of taxonomic diversity and richness were relatively insensitive to drying–rewetting frequency. We hypothesize that drying–rewetting induced shifts in bacterial community composition may partly explain the changes in C mineralization rates that are commonly observed following exposure to numerous drying–rewetting cycles. Microbial community composition may influence soil processes, particularly in soils exposed to a significant level of environmental stress.     

Ecosystem properties and microbial community changes in primary succession on a glacier forefront

We studied microbial community composition in a primary successional chronosequence on the forefront of Lyman Glacier, Washington, United States. We sampled microbial communities in soil from nonvegetated areas and under the canopies of mycorrhizal and nonmycorrhizal plants from 20- to 80-year-old zones along the successional gradient. Three independent measures of microbial biomass were used: substrate-induced respiration (SIR), phospholipid fatty acid (PLFA) analysis, and direct microscopic counts. All methods indicated that biomass increased over successional time in the nonvegetated soil. PLFA analysis indicated that the microbial biomass was greater under the plant canopies than in the nonvegetated soils; the microbial community composition was clearly different between these two types of soils. Over the successional gradient, the microbial community shifted from bacterial-dominated to fungal-dominated. Microbial respiration increased while specific activity (respiration per unit biomass) decreased in nonvegetated soils over the successional gradient. We proposed and evaluated new parameters for estimating the C use efficiency of the soil microbial community: “Max” indicates the maximal respiration rate and “Acc” the total C released from the sample after a standard amount of substrate is added. These, as well as the corresponding specific activities (calculated as Max and Acc per unit biomass), decreased sharply over the successional gradient. Our study suggests that during the early stages of succession the microbial community cannot incorporate all the added substrate into its biomass, but rapidly increases its respiration. The later-stage microbial community cannot reach as high a rate of respiration per unit biomass but remains in an “energy-saving state,” accumulating C to its biomass. Received: 4 June 1998 / Accepted: 11 January 1999     

Medium-term fertilization of grassland plant communities masks plant species-linked effects on soil microbial community structure

According to the singular hypothesis of plant diversity, different plant species are expected to make unique contributions to ecosystem functioning. Hence, individual species would support distinct microbial communities. It was hypothesized that microbial community dynamics in the respective rhizospheres of, two floristically divergent species, Agrostis capillaris and Prunella vulgaris that were dominant in a temperate, upland grassland in northern Greece, would support distinct microbial communities, in agreement to the singular hypothesis. Phospholipid lipid fatty acid (PLFA) profiles of the rhizosphere soil microbial community were obtained from the grassland which had been subjected to factorial nitrogen (N) and phosphorus (P) fertilization over five plant growth seasons. The soil cores analyzed were centered on stands of the two co-occurring target plant species, sampled from five blocks in all four factorial N and P fertilization combinations. Distinct PLFA clustering patterns following principle component analysis of PLFA concentrations revealed that, in the absence of P fertilization, soils under the two plant species supported divergent microbial communities. In the P fertilized plots, however, no such distinction could be observed. Results reveal that nutrient fertilization may mask the ability of plant species to shape their own rhizosphere microbial community.     

Linking microbial community composition and soil processes in a California annual grassland and mixed-conifer forest

To investigate the potential role of microbial community composition in soil carbon and nitrogen cycling, we transplanted soil cores between a grassland and a conifer ecosystem in the Sierra Nevada California and measured soil process rates (N-mineralization, nitrous oxide and carbondioxide flux, nitrification potential), soil water and temperature, and microbial community parameters (PLFA and substrate utilization profiles) over a 2 year period. Our goal was to assess whether microbial community composition could be related to soil process rates independent of soil temperature and water content. We performed multiple regression analyses using microbial community parameters and soil water and temperature as X-variables and soil process rates and inorganic N concentrations as Y-variables. We found that field soil temperature had the strongest relationship with CO₂ production and soil NH₄⁺ concentration, while microbial community characteristics correlated with N₂O production, nitrification potential, gross N-mineralization, and soil NO₃^– concentration, independent of environmentalcontrollers. We observed a relationship between specific components of the microbial community (as determined by PLFA) and soil processes,particularly processes tightly linked to microbial phylogeny (e.g. nitrification). The most apparent change in microbial community composition in response to the 2 year transplant was a change in relative abundance of fungi (there was only one significant change in PLFA biomarkers for bacteria during 2 years). The relationship between microbial community composition and soil processes suggests that prediction of ecosystem response to environmental change may be improved by recognizing and accounting for changes in microbial community composition and physiological ecology.     

Spatial Patterns of Soil Microbial Communities in a Norway Spruce (Picea abies) Plantation

The phospholipid fatty acid (PLFA) profiles of soil microbial communities were determined in relation to the patterns of tree cover in a mature Norway spruce plantation. Replicate samples of the surface organic layers were taken close to the trunk, at 1 m and at 2 m (under the edge of the canopy) beneath five trees. Samples were analyzed for standard PLFAs to assess the initial composition of the microbial communities. Replicate samples were then incubated under constant or fluctuating moisture conditions for 30 d to test the hypothesis that the patterns of microbial community structure (or its physiological state) might be determined by biophysical conditions under the tree canopies. The PLFA profiles near the trunks and at 2 m were similar, but samples taken 1 m from the bases of the trees contained lower concentrations of polyunsaturated (fungal) and monounsaturated PLFAs, and higher concentrations of saturated PLFAs. These differences in PLFA profiles were maintained during laboratory incubation under a regime of drying and wetting cycles, but there was some evidence of convergence in community structure under constant moisture conditions resulting from significant increases and decreases in specific bacterial PLFA concentrations. There were no effects of either moisture treatment on fungal PLFA concentrations. It is concluded that variation in the soil biophysical environment beneath the tree canopies resulted in the differentiation of spatially defined bacterial communities that were tolerant of moisture stress. The anomaly that differences in community structure were largest at an intermediate position of 1 m between the trunk and below the canopy edge was not explained but may relate to tree root distribution.     

Effects of tree clumps on soil characteristics in a humid savanna of West Africa (Lamto,Côte d'Ivoire)

The effect of tree clumps on soil characteristics was investigated in a humid savanna (Lamto, Côte d'Ivoire). Soil texture and field capacity were not significantly different under tree clumps compared to open grassland. On the other hand, bulk density was lower under tree clumps, likely due to a greater soil fauna activity under the trees. The pH, available phosphorus, cation exchange capacity, total carbon and total nitrogen contents were higher under tree clumps due to greater organic matter input beneath canopies. Potential soil respiration and mineral nitrogen accumulation were also enhanced, indicating a higher potential microbial activity under tree clumps. Soil water content was slightly lower beneath canopies (from July to November only between 0 and 10 cm depth) when soil moisture was above field capacity. During the other months, no significant difference was measured.     

Dynamics of soil respiration in sparse <Emphasis Type="Italic">Ulmus pumila</Emphasis> woodland under semi-arid climate

Sparse Ulmus pumila woodlands play an important role in contributing to ecosystem function in semi-arid grassland of northern China. To understand the key attributes of soil carbon cycling in U. pumila woodland, we studied dynamics of soil respiration in the canopy field (i.e., the projected crown cover area) and the open field at locations differing in distance (i.e., at 1–1.5, 3–4, 10, and >15 m) to tree stems from July through September of 2005, and measured soil biotic factors (e.g., fine root mass, soil microbial biomass, and activity) and abiotic factors [e.g., soil water content (SWC) and organic carbon] in mid-August. Soil respiration was further separated into root component and microbial component at the end of the field measurement in September. Results showed that soil respiration had a significant exponent relationship with soil temperature at 10-cm depth. The temperature sensitivity index of soil respiration, Q ₁₀, was lower than the global average of 2.0, and declined significantly (P < 0.05) with distance. The rate of soil respiration was generally greater in the canopy field than in the open field; monthly mean of soil respiration was 305.5–730.8 mg CO₂ m⁻² h⁻¹ in the canopy field and 299.6–443.1 mg CO₂ m⁻² h⁻¹ in the open field from July through September; basal soil respiration at 10°C declined with distance, and varied from ~250 mg CO₂ m⁻² h⁻¹ near tree stems to <200 mg CO₂ m⁻² h⁻¹ in the open field. Variations in soil respiration with distance were consistent with patterns of SWC, fine root mass, microbial biomass and activities. Regression analysis indicated that soil respiration was tightly coupled with microbial respiration and only weakly related to root respiration. Overall, variations in SWC, soil nutrients, microbial biomass, and microbial activity are largely responsible for the spatial heterogeneity of soil respiration in this semi-arid U. pumila woodland.     

PLFA Profiling of Microbial Community Structure and Seasonal Shifts in Soils of a Douglas-fir Chronosequence

The impact and frequency of forest harvesting could significantly affect soil microbial community (SMC) structure and functioning. The ability of soil microorganisms to perform biogeochemical processes is critical for sustaining forest productivity and has a direct impact on decomposition dynamics and carbon storage potential. The Wind River Canopy Crane Research Forest in SW, WA, provided a unique opportunity to study a forest chronosequence and the residual effects of harvesting on the SMC in comparison to old-growth forests. The objective of this study was to determine the effect of clear-cutting and stand age on temporal dynamics of SMC and physiological stress markers using phospholipid fatty acid (PLFA) profiling. Soil microbial PLFA profiles were determined seven times over 22 months (Nov. 02 to Sep. 04) in old-growth coniferous forest stands (300–500 years) and 8 (CC8)- or 25 (CC25)-year-old replanted clear-cuts. PLFA patterns of the SMC shifted because of clear-cutting, but seasonal temporal changes had greater shifts than differences among stand age. The microbial biomass (total PLFA) and bacterial, fungal, and selected other PLFAs were significantly reduced in CC8 but not in CC25 sites relative to the old-growth sites. An increase in stress indicators [PLFA ratios of saturated/monsaturated and (cy17:0 + cy19:0)/(16:1ω7 + 18:1ω7)] in late summer was related to water stress. Although the canopy and litter input are quite different for a 25-year clear-cut compared to virgin old-growth forest, we conclude that the composition of the microbial communities, 25 years after clear-cutting, has recovered sufficiently to be much more similar to old-growth forests than a recent clear-cut at this Pacific Northwest forest site. The study shows the potential of PLFA analysis for profiling microbial communities and their stress status under field conditions, but wide temporal shifts emphasize the need for sampling over seasons to fully interpret ecosystem management impacts on microbial populations.     

Responses of soil bacterial and fungal communities to reciprocal transfers of soil between adjacent coniferous forest and meadow vegetation in the Cascade Mountains of Oregon

Little information exists on the responses of soil fungal and bacterial communities in high elevation coniferous forest/open meadow ecosystems of the northwest United States of America to treatments that impact vegetation and soil conditions. An experiment was conducted in which soil cores were reciprocally transplanted between immediately adjacent forests and meadows at two high elevation (∼1,600 m) sites (Carpenter and Lookout) in the H.J. Andrews Experimental Forest located in the Cascade Mountains of Oregon. Half of the cores were placed in PVC pipe (closed) to prevent new root colonization, whereas the other cores were placed in mesh bags (open) to allow recolonization by fine roots. A duplicate set of open and closed soil cores was not transferred between sites and was incubated in place. After 2 year, soil cores were removed and changes in fungal and bacterial biomasses determined using light microscopy, and changes in microbial community composition determined by PLFA analysis, and by length heterogeneity PCR of the internal transcribed spacer region of fungal ribosomal DNA. At both sites soil microbial community structures had responded to treatments after 2 year of incubation. At Carpenter, both fungal and bacterial community structures of forest soil changed significantly in response to transfer from forest to meadow, with the shift in fungal community structure being accompanied by a significant decrease in the PLFA biomarker of fungal biomass,18:2ω6,9. At Lookout, both fungal and bacterial community structures of forest soil changed significantly in response to open versus closed core treatments, with the shift in the fungal community being accompanied by a significant decrease in the 18:2ω6,9 content of closed cores, and the shift in the bacterial community structure being accompanied by a significant increase in bacterial biomass of closed cores. At both sites, fungal community structures of meadow soils changed differently between open and closed cores in response to transfer to forest, and were accompanied by increases in the18:2ω6,9 content of open cores. Although there were no significant treatment effects on the bacterial community structure of meadow soil at either site, bacterial biomass was significantly higher in closed versus open cores regardless of transfer.     

Interactive effects of water and nitrogen addition on soil microbial communities in a semiarid steppe

Aims Better understanding of microbial compositional and physiological acclimation mechanisms is critical for predicting terrestrial ecosystem responses to global change. The aim is to assess variations in soil microbial communities under future scenarios of changing precipitation and N deposition in a semiarid grassland of northern China.Methods In order to explicitly estimate microbial responses, a field experiment with water and N addition was established in April 2005 and continuously conducted for 4 years. Specifically, soil microbial community composition and microbial C utilization potential were determined by phospholipid fatty acid (PLFA) and community-level physiological profiles, respectively.Important findings Water addition had no effects on the PLFA concentrations of gram-positive (GP) and negative bacteria (GN), total bacteria and fungi. However, N addition caused significant reductions in the PLFA concentrations of GP, GN, total bacteria and fungi and thus decreased total PLFA of microbial communities. Moreover, there were interactive effects of water and N addition on GN/GP and the ratio of fungal to bacterial PLFA (F/B). In addition, synergistic effects were found between water and nitrogen in affecting microbial C utilization potentials, which implies that microbial C utilization potentials tend to be enhanced when both N and water availability are sufficient. Overall, the microbial responses to water and N addition support our hypothesis that water and N addition may be combined together to affect microbial communities in the semiarid grassland.     

帽儿山3种森林生态系统土壤动物与土壤呼吸及其相互关系研究

土壤呼吸是森林生态系统碳循环的关键过程,土壤动物可通过自身代谢及影响微生物活动调控土壤呼吸,因此研究土壤动物与土壤呼吸的相互关系对进一步揭示生态系统碳循环的规律和机理具有重要意义。通过野外定点,以帽儿山3种森林生态系统的土壤呼吸及土壤动物为研究对象,探讨不同森林生态系统的土壤呼吸、土壤动物个体密度和生物量的时间变化规律及二者相互关系。结果表明:(1)3种森林生态系统土壤总呼吸速率与土壤异养呼吸速率均呈现先增强后减弱的时间动态变化(P<0.05),且不同森林生态系统土壤异养呼吸速率差异显著(P<0.05),表现为硬阔叶林最高,红松人工林最低;(2)3种森林生态系统土壤动物生物量也具有显著的时间动态变化(P<0.05),均在9月份达到最大,且不同森林生态系统土壤动物个体密度显著不同(P<0.05),蒙古栎林土壤动物个体密度显著小于红松人工林与硬阔叶林;(3)通过回归分析可得,土壤动物数量及生物量的增加抑制了土壤呼吸速率,尤其在生长季初期、末期。研究表明土壤动物可通过抑制微生物生命活动和降低根系呼吸从而对土壤总呼吸及异养呼吸产生负反馈作用,三者是不可分割的整体,与土壤温度、水分等环境因子共同调控着土壤呼吸。     

Tree photosynthesis modulates soil respiration on a diurnal time scale

To estimate how tree photosynthesis modulates soil respiration, we simultaneously and continuously measured soil respiration and canopy photosynthesis over an oak‐grass savanna during the summer, when the annual grass between trees was dead. Soil respiration measured under a tree crown reflected the sum of rhizosphere respiration and heterotrophic respiration; soil respiration measured in an open area represented heterotrophic respiration. Soil respiration was measured using solid‐state CO₂ sensors buried in soils and the flux‐gradient method. Canopy photosynthesis was obtained from overstory and understory flux measurements using the eddy covariance method. We found that the diurnal pattern of soil respiration in the open was driven by soil temperature, while soil respiration under the tree was decoupled with soil temperature. Although soil moisture controlled the seasonal pattern of soil respiration, it did not influence the diurnal pattern of soil respiration. Soil respiration under the tree controlled by the root component was strongly correlated with tree photosynthesis, but with a time lag of 7–12 h. These results indicate that photosynthesis drives soil respiration in addition to soil temperature and moisture.     

土壤微生物群落对枯落物输入的响应

枯落物分解在陆地生态系统物质循环能量流动中起着关键性作用,明确枯落物输入对土壤微生物群落的影响有助于理解土壤微生物生物多样性和陆地生态系统功能的相互关系。本文采用整合分析方法,以中国为研究区域,以不添加枯落物为对照组,探究土壤微生物(真菌、细菌、放线菌)及微生物生物量碳、生物量氮对枯落物输入的响应。结果表明:与不添加枯落物相比,添加枯落物后土壤微生物生物量碳、生物量氮分别显著增加3.9%和4.4%;土壤真菌PLFA、细菌PLFA及总微生物PLFA分别增加4.0%、3.1%和2.4%。枯落物输入对土壤微生物的影响受到气候条件、年降水量、植被类型及土壤酸碱度等因素的显著影响;不同气候类型下,土壤微生物对枯落物输入的响应呈现出亚热带季风气候区>温带季风气候区>温带大陆气候区的趋势,以及随着年降水量的增加呈现出先升高后降低的趋势;不同植被类型下,土壤微生物对枯落物输入的响应呈现出阔叶林>草地≈混交林>针叶林的趋势。     

藏北古露高寒草地生态系统对短期围封的响应

过度放牧导致高寒草地生态系统退化,围封是生态保护和恢复的管理手段。以青藏高原那曲县古露镇过牧退化高寒草地为对象,系统分析了高寒草地生态系统的植被特征及土壤理化特性、土壤酶活性、土壤微生物生物量和群落结构对围封的响应。结果表明,短期围封后,(1)植被平均高度、盖度和地上生物量均有极显著增加(P0.01),而生物多样性指数则显著降低(P0.01);(2)土壤的水溶性有机碳含量、土壤物理结构(沙土与粉土的比例)及pH有显著变化(P0.05);(3)土壤酶活性没有明显改善;(4)土壤微生物生物量(细菌、放线菌、真菌)均呈显著增加(P0.05);(5)土壤中细菌的多样性有增加的趋势,其群落组成在门水平上也发生了变化;(6)Manteltest分析显示与土壤细菌群落结构的呈正相关性的环境因子主要为土壤有机碳含量(TOC)、总氮含量(TN)、碳磷比(C/P)与氮磷比(N/P)(P0.05)。这表明围栏封育有利于藏北草地植被、土壤理化特性的恢复,还能维持土壤微生物多样性,促进高寒草地生态系统的可持续发展。     

岷江干旱河谷优势灌丛对土壤微生物群落组成的影响

通过调查岷江干旱河谷两河口、飞虹、撮箕和牟托4个样地优势灌丛及其灌丛间空地的表土土壤物理化学性质和微生物群落组成,探讨植物灌丛群落对土壤微生物群落组成的影响。研究发现不同灌丛种类对土壤微生物群落组成以及土壤物理化学性质并没有显著影响,而同一样地灌丛与空地间的差异却较为显著。灌丛下比空地土壤中具有更高的有机质、养分含量,更高的土壤含水量和更低的容重,而灌丛下相对富集的养分资源是造成灌丛与空地间微生物群落组成差异的主要原因。不同样地影响微生物群落的主要因子存在一定差异,但与氮相关的因子(总氮、有效氮、碳/氮比)对土壤微生物群落着非常重要的影响,特别是对土壤微生物群落总生物量和细菌类群(革兰氏阳性菌、革兰氏阴性菌、细菌等)。虽然不同灌丛和空地下土壤中细菌群落都没有显著地变化,但真菌和菌根真菌却明显的在灌丛下富集。在飞虹和牟托样地,总磷和碳/磷比与真菌类群,主要指真菌和菌根真菌,表现出显著正相关性,这或许反映了真菌类群对于该区域磷循环的重要作用。研究结果揭示了灌丛植被在干旱河谷地区地下生态系统中的重要作用,以及氮、磷这两种养分元素对土壤微生物群落的重要影响。同时,未来对于干旱河谷地区植物-土壤关系的研究应该关注真菌和菌根真菌类群的作用。     

Cross-Site Soil Microbial Communities under Tillage Regimes: Fungistasis and Microbial Biomarkers

The exploitation of soil ecosystem services by agricultural management strategies requires knowledge of microbial communities in different management regimes. Crop cover by no-till management protects the soil surface, reducing the risk of erosion and nutrient leaching, but might increase straw residue-borne and soilborne plant-pathogenic fungi. A cross-site study of soil microbial communities and Fusarium fungistasis was conducted on six long-term agricultural fields with no-till and moldboard-plowed treatments. Microbial communities were studied at the topsoil surface (0 to 5 cm) and bottom (10 to 20 cm) by general bacterial and actinobacterial terminal restriction fragment length polymorphism (T-RFLP) and phospholipid fatty acid (PLFA) analyses. Fusarium culmorum soil fungistasis describing soil receptivity to plant-pathogenic fungi was explored by using the surface layer method. Soil depth had a significant impact on general bacterial as well as actinobacterial communities and PLFA profiles in no-till treatment, with a clear spatial distinction of communities (P < 0.05), whereas the depth-related separation of microbial communities was not observed in plowed fields. The fungal biomass was higher in no-till surface soil than in plowed soil (P < 0.07). Soil total microbial biomass and fungal biomass correlated with fungistasis (P < 0.02 for the sum of PLFAs; P < 0.001 for PLFA 18:2ω6). Our cross-site study demonstrated that agricultural management strategies can have a major impact on soil microbial community structures, indicating that it is possible to influence the soil processes with management decisions. The interactions between plant-pathogenic fungi and soil microbial communities are multifaceted, and a high level of fungistasis could be linked to the high microbial biomass in soil but not to the specific management strategy.     

Variation in soil respiration under the tree canopy in a temperate mixed forest,central China,under different soil water conditions

The forest canopy cover can directly and indirectly affect soil conditions and hence soil carbon emission through soil respiration. Little is known, however, on the effects of canopy cover on soil respiration under the canopy of different tree species and soil water conditions. We have examined the variation in soil respiration at different soil water conditions (dry <10 %, wet >20 %, v/v) under different tree canopy covers in comparison with the canopy interspace in a temperate coniferous (Pinus armandii Franch) and broadleaved (Quercus aliena var. acuteserrata) mixed forest in central China. The results show that soil respiration measured under tree canopy cover varied with canopy size and soil water content. Soil respiration under small-sized canopies of P. armandii (PS) was higher than that under large-sized (PL) canopies, but the difference was only significant under the dry soil condition. However, soil respiration under large-sized canopies of Q. aliena (QL) was significantly greater than that under small-sized (QS) canopies under both dry and wet soil conditions. The difference in soil respiration between differently sized canopies of Q. aliena (33.5–35.8 %) was significantly greater than that between differently sized canopies of P. armandii (2.4–8.1 %). Differences in soil respiration between inter-plant gaps and under QS canopies in both the dry and wet soil conditions were significant. Significant increases in soil respiration (9.7–32.2 %) during the transition from dry to wet conditions were found regardless of canopy size, but the increase of soil respiration was significantly lower under P. armandii canopies (9.7–17.7 %) than under Q. aliena canopies (25.9–31.5 %). Our findings that the canopy cover of different tree species influences soil respiration under different soil moisture conditions could provide useful information for parameterizing and/or calibrating carbon flux models, especially for spatially explicit carbon models.     

黄土丘陵区不同施肥处理对土壤微生物特性的影响

研究旨在探讨在土壤贫瘠的黄土丘陵区,施肥对土壤微生物产生的影响及其机理。试验以安塞站内长期定位施肥小区为研究对象,试验处理包括CK(对照)、N(氮肥)、P(磷肥)、M(有机肥)、NP(氮肥+磷肥)、MN(有机肥+氮肥)、MP(有机肥+磷肥)和MNP(有机肥+氮肥+磷肥),研究长期施肥对土壤微生物群落结构和呼吸的影响。0—20cm耕作层的土壤微生物活性和PLFA含量均高于20—40cm土层的微生物活性和PLFA含量,耕作层较20—40cm基础呼吸提高63.61%—116.78%,诱导呼吸提高53.45%—137.64%,总PLFA含量提高16.16%—43.67%。单施N和P增强了土壤呼吸强度,0—20cm基础呼吸强度分别升高34.11%和48.89%,诱导呼吸强度分别升高40.83%和63.59%,20—40cm基础呼吸分别升高40.83%和63.59%,诱导呼吸分别升高14.70%和20.49%。单施N显著改变G-微生物群落,0—20cm和20—40cm土层的PLFA含量分别显著升高63.19%和53.07%,单施P对土壤微生物群落结构同样产生显著影响,但是NP对微生物群落结构的影响不显著。有机无机肥配施显著提高土壤呼吸及微生物PLFA含量。通过三因素方差分析,单一氮肥因素对土壤微生物特性的影响不显著;单一磷肥因素对微生物的呼吸强度及部分磷脂脂肪酸含量产生显著影响,在耕作层中,磷肥因素对这些微生物特性的影响比率为11.4%—54.0%。通过RDA分析,表明土壤速效磷是影响黄土丘陵区微生物特性的主要因素。长期氮磷有机肥混施有助于提高土壤微生物的特性,进而改善农田生态系统的稳定和健康水平。     

Successional changes in the soil microbial community along a vegetation development sequence in a subalpine volcanic desert on Mount Fuji, Japan

Aims

To study the relationship between vegetation development and changes in the soil microbial community during primary succession in a volcanic desert, we examined successional changes in microbial respiration, biomass, and community structure in a volcanic desert on Mount Fuji, Japan.

Methods

Soil samples were collected from six successional stages, including isolated island-like plant communities. We measured microbial respiration and performed phospholipid fatty acid (PLFA) analysis, denaturing gradient gel electrophoresis (DGGE) analysis, and community-level physiological profile (CLPP) analysis using Biolog microplates.

Results

Microbial biomass (total PLFA content) increased during plant succession and was positively correlated with soil properties including soil water and soil organic matter (SOM) contents. The microbial respiration rate per unit biomass decreased during succession. Nonmetric multidimensional scaling based on the PLFA, DGGE, and CLPP analyses showed a substantial shift in microbial community structure as a result of initial colonization by the pioneer herb Polygonum cuspidatum and subsequent colonization by Larix kaempferi into central areas of island-like communities. These shifts in microbial community structure probably reflect differences in SOM quality.

Conclusions

Microbial succession in the volcanic desert of Mt. Fuji was initially strongly affected by colonization of the pioneer herbaceous plant (P. cuspidatum) associated with substantial changes in the soil environment. Subsequent changes in vegetation, including the invasion of shrubs such as L. kaempferi, also affected the microbial community structure.