微生物降解石油污染物机制研究进展

石油污染是当前紧迫的水环境问题,研究石油污染物降解机制有助于探索石油污染修复技术路径。重点介绍了微生物降解石油污染物过程中的微生物种类、降解机制和反应机理,即具有代表性的细菌、真菌和藻类,石油烃的有氧降解(链烷烃、环烷烃和芳香烃)和厌氧降解(脱氢羟基化、延胡索酸盐加成)。并对微生物降解石油组分的影响因素进行了讨论,具体包括:烃类结构(支链多结构越复杂,越难降解)、微生物种类(混合菌的生化降解能力更强)、环境因子(pH、温度、盐度、含氧量和营养物质),进一步指出了生物修复技术应用于石油污染修复治理研究中的优缺点。此外,还对现有微生物降解技术的应用做了简要概述,归纳总结现有研究中存在的问题,尝试性的提出了今后生物降解石油污染物的研究重点,即生物降解石油的机制还需进一步明确,并重点分析了生物电化学方法在降解去除石油污染物方面可行性。综述石油烃生物降解机制和反应机理,以期为生物修复水体石油污染提供参考和借鉴作用。     

石油污染海域的微生物群落及烃的降解

目前世界海洋石油污染问题已经严重威胁到海洋生态环境的安全,生物修复是一种处理石油污染的新方法。综述了海洋环境中烃降解微生物生态学方面的一些研究进展,包括探测未培养细菌的新方法、新的分离方法及主要的烃降解菌株的特性,以便努力改进现有分离石油降解菌及石油乳化细菌的方法,同时发现对于石油降解有益的新菌种。     

微生物降解石油烃的功能基因研究进展

微生物对石油烃的降解在自然衰减去除土壤和地下水石油烃污染的过程中发挥了重要作用。微生物通过其产生的一系列酶来利用和降解这类有机污染物,其中,编码关键降解酶的基因称为功能基因。功能基因可作为生物标志物用于分析环境中石油烃降解基因的多样性。因此,研究石油降解功能基因是分析土著微生物群落多样性、评价自然衰减潜力与构建基因工程菌的重要基础。本文主要介绍了烷烃和芳香烃在有氧和无氧条件下的微生物降解途径,重点总结了烷烃和芳香烃降解的主要功能基因及其作用,包括参与羟化作用的单加氧酶和双加氧酶基因、延胡索酸加成反应的琥珀酸合酶基因以及中心中间产物的降解酶基因等。     

海洋石油污染物的微生物降解与生物修复

石油是海洋环境的主要污染物 ,已经对海洋及近岸环境造成了严重的危害。微生物降解是海洋石油污染去除的主要途径。海洋石油污染物的微生物降解受石油组分与理化性质、环境条件以及微生物群落组成等多方面因素的制约 ,N和P营养的缺乏是海洋石油污染物生物降解的主要限制因子。在生物降解研究基础上发展起来的生物修复技术在海洋石油污染治理中发展潜力巨大 ,并且取得了一系列成果。介绍了海洋中石油污染物的来源、转化过程、降解机理、影响生物降解因素及生物修复技术等方面内容 ,强调了生物修复技术在治理海洋石油污染环境中的优势和重要性 ,指出目前生物修复技术存在的问题。     

石油烃降解菌的研究进展

该文归纳了细菌、真菌和藻类对石油烃的降解作用;讨论了微生物降解石油烃的影响因素,包括微生物种类、石油烃种类、温度、pH、营养物质、电子受体等;总结了微生物固定化技术、生物表面活性剂和基因工程技术在微生物降解石油烃领域的应用;最后,提出今后生物降解石油烃的研究重点可能是开发具有高效降解能力的菌群联合体。     

不同生物修复技术处理油污土壤的效果研究

为了探究生物修复技术对油污土壤的处理效果,研究采用生物刺激和生物强化修复技术研究在修复过程中石油烃组分含量、表面张力、微生物数量、酶活性指标的变化。结果表明:生物刺激在降解饱和烃、降低土壤中溶液表面张力、增加微生物数量、提高土壤酶活性方面优于生物强化,而生物强化则对于石油烃中难降解的芳香烃有很好的降解效果,两者各有优势。     

计算机重构石油烃降解的微生物代谢途径

目的:用计算机重构石油烃降解通路,为石油污染的生物修复提供理论依据。方法:利用KEGG反应、化合物数据提取反应等式,过滤掉所有反应中的通用化合物及小分子化合物并构建反应矩阵,然后利用广度优先搜索算法在反应矩阵中搜索降解石油烃的代谢途径。结果:计算机分别重构了256 132条链烷烃降解途径和44条环己烷降解途径,以酿酒酵母作为降解石油烃的基因工程菌为例,通过限制改构菌整合的关键酶数目,分别得到了213条不需要转入关键酶的链烷烃降解通路和6条以氧化还原酶、松柏醇脱氢酶或环己醇脱氢酶和环己酮单氧酶为关键酶的环己烷降解通路,并构建相应的降解网络图,标注每个反应的酶。结论:应用计算机重构了2种石油烃降解途径,可为利用微生物对石油污染进行生物修复提供理论依据。     

低温微生物修复石油烃类污染土壤研究进展

耐冷菌、嗜冷菌等低温微生物广泛存在于极地、高山以及高纬度等土壤环境中,是石油烃类污染物在低温条件下降解与转化的重要微生物资源.利用低温微生物的独特优势,石油污染土壤的低温生物修复技术的研究成为当前热点领域.本文系统综述了低温石油烃降解菌的分类及冷适机制,低温微生物对不同类型石油烃组分的降解特征和降解机理,低温环境中接种降解菌、添加营养物质和表面活性剂等强化技术在石油污染土壤中生物修复的应用.以及微生物分子生物学技术在低温微生物降解石油烃的研究现状,为拓展我国石油污染土壤生物修复技术提供参考.     

石油烃生物降解过程的研究进展

石油烃污染物属于难降解混合物,生物修复已经成为石油烃污染环境的主要修复方法。文中简述了微生物对石油烃的间期适应过程和转运过程,并通过对部分典型石油烃成分的微生物降解机理和代谢路径的梳理和综述,阐释了石油烃生物降解过程中的菌株、基因、代谢路径等研究进展。此外,利用基因工程和代谢工程等手段,可对野生型石油烃降解菌进行改造,进一步提升其对石油烃污染环境的生物修复能力。最后,从石油烃降解菌的代谢途径改造、人工混菌体系的设计构建等角度,结合合成生物学和代谢工程的手段,提出了对石油烃降解的研究展望,以期提升对石油烃污染物的生物修复效果。     

铁还原菌降解石油烃的研究进展

铁还原菌是指能够利用细胞外Fe(III)作为末端电子受体,通过氧化有机物将Fe(III)还原为Fe(II)微生物的总称。铁还原作用广泛存在于土壤、河流、海洋、地表含水层以及高温高压的地下深部油藏。在厌氧或兼性厌氧条件下,Fe(III)还原耦合有机物的降解,对铁、碳元素的生物地球化学循环具有重要意义。本文介绍了铁还原菌的多样性和铁还原作用机理,综述了铁还原菌在石油烃降解方面的研究进展。此外,还总结了铁还原菌在生物修复中的潜在作用,并对未来的研究方向进行了展望。     

水体沉积物中微生物厌氧呼吸耦合多环芳烃降解的研究进展

多环芳烃(Polycyclic aromatic hydrocarbons,PAHs)是一种具有致癌、致畸、致突变的持久性有机污染物。本文在分析国内外主要水体沉积物中PAHs污染状况的基础上,综述了近几年有关厌氧水体沉积物中微生物以硝酸盐、Fe(III)以及硫酸盐为电子受体进行呼吸耦合PAHs降解的研究概况。此外,还总结了基于微生物的PAHs降解基因组、蛋白质组、代谢组以及菌群水平上互作网络的研究进展,以期为进一步加速PAHs污染水体沉积物原位生物修复提供科学理论参考。     

Microbial communities in oil-contaminated seawater

Although diverse bacteria capable of degrading petroleum hydrocarbons have been isolated and characterized, the vast majority of hydrocarbon-degrading bacteria, including anaerobes, could remain undiscovered, as a large fraction of bacteria inhabiting marine environments are uncultivable. Using culture-independent rRNA approaches, changes in the structure of microbial communities have been analyzed in marine environments contaminated by a real oil spill and in micro- or mesocosms that mimic such environments. Alcanivorax and Cycloclasticus of the gamma-Proteobacteria were identified as two key organisms with major roles in the degradation of petroleum hydrocarbons. Alcanivorax is responsible for alkane biodegradation, whereas Cycloclasticus degrades various aromatic hydrocarbons. This information will be useful to develop in situ bioremediation strategies for the clean-up of marine oil spills.     

Biodegradation of polycyclic aromatic hydrocarbons

The intent of this review is to provide an outline of the microbial degradation of polycyclic aromatic hydrocarbons. A catabolically diverse microbial community, consisting of bacteria, fungi and algae, metabolizes aromatic compounds. Molecular oxygen is essential for the initial hydroxylation of polycyclic aromatic hydrocarbons by microorganisms. In contrast to bacteria, filamentous fungi use hydroxylation as a prelude to detoxification rather than to catabolism and assimilation. The biochemical principles underlying the degradation of polycyclic aromatic hydrocarbons are examined in some detail. The pathways of polycyclic aromatic hydrocarbon catabolism are discussed. Studies are presented on the relationship between the chemical structure of the polycyclic aromatic hydrocarbon and the rate of polycyclic aromatic hydrocarbon biodegradation in aquatic and terrestrial ecosystems.     

Advance in the toxic effects of petroleum water accommodated fraction on marine plankton

Recently, the impact of petroleum pollution on marine plankton has been complemented by a great concern. This review summarizes the reports about toxic effects of oil water accommodated fraction (WAF) on marine phytoplankton, zooplankton and early life stage of animal. For the oil WAF, toxicants are mainly composed of the aromatic hydrocarbons, such as the benzene hydrocarbons and polycyclic aromatic hydrocarbons (PAHs) with 2–5 rings. The oil WAF, especially the PAHs, can be accumulated in plankton due to their great lipophilic abilities, and thus elicites various deleterious effects. Toxicological tests show that marine plankton is very sensitive to the petroleum WAF, as the order of median effective/lethal concentration is merely μg/L or mg/L. There are species and developmental stages differences of plankton tolerance to petroleum WAF, and the toxicity of different oil WAF is various. Generally, its toxicity enhances with increasing carbonic chain length and benzene ring number. Many studies on the acute and sub-acute toxic effects of oil WAF have been done, however few researches on its chronic toxic effects has been carried out till now. Besides, most reports focused on the levels from molecule to individual, though very little work of petroleum toxic effects has ever been performed on the marine plankton population or community levels. Therefore, it is necessary to continue these studies in future.     

Synergistic Effect of Yeast-Bacterial Co-Culture on Bioremediation of Oil-Contaminated Soil

The effects of various treatments, including biostimulation, bioaugmentation with bacterial consortium, yeast, and yeast-bacterial co-culture, on oil biodegradation were systematically compared. Synergistic effects were observed on the removal of total petroleum hydrocarbon and polycyclic aromatic hydrocarbons via the amendment of co-culture, with a 48-day degradation of 56% for total petroleum hydrocarbon and 32% for polycyclic aromatic hydrocarbons, respectively. Yeast played an important role in the removal of polycyclic aromatic hydrocarbons with 4–6 rings. The synergistic effect of yeast-bacteria was further evidenced by the increase of biomass and enzyme activities in soil. In comparison with the bacterial community, the yeast community was more sensitive to the inoculated cultures, which was indexed by the changes of diversity, abundance, and evenness in polymerase chain reaction–denaturing gradient gel electrophoresis (PCR-DGGE) analysis.     

Metagenomic analysis of microbial communities across a transect from low to highly hydrocarbon-contaminated soils in King George Island,Maritime Antarctica

Soil samples from a transect from low to highly hydrocarbon-contaminated soils were collected around the Brazilian Antarctic Station Comandante Ferraz (EACF), located at King George Island, Antarctica. Quantitative PCR (qPCR) analysis of bacterial 16S rRNA genes, 16S rRNA gene (iTag), and shotgun metagenomic sequencing were used to characterize microbial community structure and the potential for petroleum degradation by indigenous microbes. Hydrocarbon contamination did not affect bacterial abundance in EACF soils (bacterial 16S rRNA gene qPCR). However, analysis of 16S rRNA gene sequences revealed a successive change in the microbial community along the pollution gradient. Microbial richness and diversity decreased with the increase of hydrocarbon concentration in EACF soils. The abundance of Cytophaga, Methyloversatilis, Polaromonas, and Williamsia was positively correlated (p-value = <.05) with the concentration of total petroleum hydrocarbons (TPH) and/or polycyclic aromatic hydrocarbons (PAH). Annotation of metagenomic data revealed that the most abundant hydrocarbon degradation pathway in EACF soils was related to alkyl derivative-PAH degradation (mainly methylnaphthalenes) via the CYP450 enzyme family. The abundance of genes related to nitrogen fixation increased in EACF soils as the concentration of hydrocarbons increased. The results obtained here are valuable for the future of bioremediation of petroleum hydrocarbon-contaminated soils in polar environments.     

Enhanced Microbial Removal of Pyrene in Soils in the Presence of Earthworms

Microbial degradation of pyrene was studied in soils in the presence and absence of earthworms (Eisenia foetida) to demonstrate an integrated innovative strategy for bioremediation of sites lightly polluted by polycyclic aromatic hydrocarbons. Desorption of pyrene and soil microbial respiration were measured to elucidate the mechanism of enhanced microbial degradation. The results showed that both soil properties and contact time could influence pyrene biodegradation. The introduction of E. foetida enhanced pyrene removal significantly both in freshly spiked and aged soils. The percentage pyrene removal in the presence of E. foetida was 45.5–91.0% after 14 d of incubation, which were 2.1 to 2.8 times greater than those without the worms. The enhanced pyrene removal is attributed to both enhanced microbial degradation and uptake by the worms. Microbial degradation of pyrene increased by 1.2 to 1.6 times in the presence of the worms. Overall, the introduction of live worms could improve both pyrene bioavailability and microbial activity, which leads to enhanced microbial degradation of pyrene.     

表面活性剂影响微生物降解多环芳烃的研究进展

多环芳烃(Polycyclic Aromatic Hydrocarbons,PAHs)的强疏水性是阻止其在土壤和水环境中微生物降解的主要因素。表面活性剂由于能够提高PAHs的表观溶解度而在PAHs的微生物降解中得到了广泛研究。截至目前,有关化学或生物表面活性剂促进PAHs的微生物降解已有大量报道,然而也有学者发现了表面活性剂对PAHs微生物降解的抑制作用。本文从表面活性剂类型与毒性、PAHs增溶、传质强化、细胞表面性质和环境因素等方面综述了表面活性剂影响PAHs微生物降解的最新进展,并对这2种冲突性的研究成果进行了阐释。此外,介绍了浊点系统促进PAHs微生物降解的新方法。最后,对表面活性剂影响微生物降解PAHs的研究前景进行了展望。     

Diffuse PAH contamination of surface soils: environmental occurrence,bioavailability, and microbial degradation

The purpose of this review is to recognize the scientific and environmental importance of diffuse pollution with polycyclic aromatic hydrocarbons (PAHs). Diffuse PAH pollution of surface soil is characterized by large area extents, low PAH concentrations, and the lack of point sources. Urban and pristine topsoils receive a continuous input of pyrogenic PAHs, which induces a microbial potential for PAH degradation. The significance of this potential in relation to black carbon particles, PAH bioaccessibility, microbial PAH degradation, and the fate of diffuse PAHs in soil is discussed. Finally, the state-of-the-art methods for future investigations of the microbial degradation of diffuse PAH pollution are reviewed.     

Microbial degradation of phenanthrene and pyrene in a two-liquid phase-partitioning bioreactor

A study was conducted to determine the potential of two-liquid phase-bioreactors for the treatment of (polycyclic aromatic hydrocarbons) PAHs. Phenanthrene and pyrene were supplied two times at a concentration of 100 mg/l of reactor broth, either as crystals or dissolved in silicone oil. Complete phenanthrene biodegradation was achieved within 3 days after each addition to the biphasic-inoculated reactor. Its concentration in the monophasic reactors dropped by 93% within 4 days, but remained incomplete for the duration of the experiment. Pyrene removal occurred to a limited extent only in the presence of phenanthrene. Significant pollutant losses were recorded in the monophasic reactors, most likely caused by volatilization. Pollutant degradation was improved upon repeated phenanthrene amendment to the biphasic system. Biphasic reactors allow the fast and complete degradation of PAHs and prevent their hazardous disappearance. The use of biphasic reactors for the degradation of poorly soluble pollutants should become more beneficial when the substrate-interface uptake mechanism is operating. Thus, biphasic reactors should be integrated into the microbial enrichment procedure.