土壤生态系统中抗生素抗性基因与星球健康:进展与展望

土壤-植物系统是抗生素抗性基因(简称抗性基因)从环境向人类传播扩散的一个重要途径,是环境抗性基因人群暴露的主要来源.通过对土壤-植物系统中抗性基因的研究,可以明确抗性基因在土壤生物中的分布及其传递,分析抗性基因食物链传递的风险及其规律,从而为控制抗性基因污染提供理论依据,保障人类健康.同时,其对于维护星球健康也具有重要的价值.本文总结了土壤(包括土壤动物肠道)和植物微生物组中抗性组的重要研究进展,强调了抗性基因流在土壤-植物系统中的流动给土壤生态系统带来的环境风险,最后提出了通过管理土壤-植物系统中的抗性基因流以保障星球健康的方案,并对未来研究进行了展望.     

石油污染土壤植物-微生物修复研究进展

依据国内外近10年来有关石油污染土壤生物修复研究的成果,综合阐述了石油污染土壤的植物修复、微生物修复及植物-微生物联合修复方法研究,重点讨论植物-微生物联合作用,主要包括植物根际微生物、根分泌物以及菌根对石油污染物降解的影响,提出了污染土壤原位修复中需要重视的问题.     

土壤中抗性基因的产生,扩散传播以及消减的研究进展

近年来,土壤中残留的大量抗生素不可避免的导致耐药微生物和抗性基因的增加和扩散,引起一系列土壤污染和生态风险。作为一类新兴污染物,抗性基因的污染水平已经远远超出我们的预想,因此对土壤中抗性基因的分布水平、扩散传播及消减技术的研究刻不容缓。本文对国内外土壤中抗生素和抗性基因残留水平进行了总结分析,探讨了土壤中抗性基因的产生、扩散的内在动力和机制。同时,分析了土壤中抗性基因分布和扩散的影响因素,如:抗生素残留水平,土壤理化性质和环境条件等。在此基础上,探讨了土壤抗性基因阻隔和消减技术,包括传统降解方法:高温,光照催化、微波-H2O2-微生物联合处理技术等,并提出新型消解技术:取代活性基团、靶位修饰以及改变外排泵的通透性等。讨论未来在控制抗性基因生态风险,降低其在土壤中的丰度,有效阻截技术的发展趋势。     

蚯蚓调控土壤微生态缓解连作障碍的作用机制

连作障碍不仅严重影响作物产量, 而且会导致土壤生物多样性下降、有益微生物减少及病原菌增加等一系列微生态失衡问题。土壤微生态失衡反作用于植物, 导致植物发生更严重的病害、减产等。作为土壤生态系统工程师, 蚯蚓的取食、掘洞和爬行等活动对土壤微生态具有重要的调控作用, 既可以改善土壤环境, 又可以强化土壤生物群落功能, 有望为缓解作物的连作障碍问题提供一条新途径。本文总结了土壤微生态与土壤功能维持及蚯蚓调控土壤生物作用的研究进展, 在此基础上, 结合蚯蚓对化感物质降解作用的研究, 分析了蚯蚓通过调控土壤微生态缓解作物连作障碍的微生物作用机制的三条途径: 直接调控微生物群落、通过改变化感物质组成以及通过调控土壤动物区系调控微生物群落。蚯蚓对微生物群落的调控可改善失衡的土壤根际微生态, 有效缓解作物连作障碍。     

土壤重金属生物毒性研究进展

世界范围内土壤重金属污染不断加重,由污染所带来的问题以及如何治理污染已经受到人们越来越多的关注.土壤重金属将对土壤生物产生影响,而土壤生物在重金属的胁迫下也会产生不同的响应.综述了国内外近年来土壤重金属生物毒性的研究进展,介绍了土壤重金属污染对陆地生态系统中植物、动物和微生物生长的影响;土壤重金属生物毒性的影响因素;土壤重金属生物毒性的研究方法;土壤重金属生物毒性的预测模型,最后提出了问题和展望.     

重金属污染土壤植物修复中的微生物功能研究进展

综述了国内外在重金属污染土壤植物-微生物联合修复领域的研究报道,总结了近5年的研究实例。植物-微生物联合修复体系具有生物固定与生物去除土壤重金属的两种功能,根际微生物可以菌根、内生菌等方式与根系形成联合体,通过增强植物抗性和优化根际环境,促进根系发展,增强植物吸收和向上转运重金属的能力。建立植物-微生物联合修复体系,可充分发挥植物与微生物作用功能的优势,提高污染土壤的修复效率。增强植物修复体系中微生物功能的重点是深入研究根际微生物、根系和介质载体三者之间复合功能,结合污染土壤类型与植物群落配置的特点筛选扩繁高效菌种与菌群。     

溶磷微生物在钝化和植物修复重金属污染土壤中的作用

钝化和植物修复是重金属污染土壤修复的重要技术手段,而溶磷微生物可进一步增强钝化和植物修复重金属污染土壤的作用。介绍了钝化和植物修复重金属污染土壤的基本原理,总结了溶磷微生物对土壤中难溶性磷酸盐的溶解、利用磷酸盐钝化修复重金属污染土壤、溶磷微生物对磷酸盐钝化修复的强化以及溶磷微生物强化植物修复重金属污染土壤的研究进展,探讨了溶磷微生物对重金属的抗性及其溶磷机理、溶磷微生物对磷酸盐钝化修复重金属污染土壤的强化作用机理以及溶磷微生物强化植物修复重金属污染土壤的作用机理。旨在为生物修复重金属污染土壤研究提供一定的理论依据和技术支撑。     

土壤动物群落研究进展

许多研究表明:土壤动物群落与土壤环境有密切关系,土壤动物的群落结构、功能在土壤生态系统中有不可替代的重要作用,是系统正常运行的关键环节,土壤动物逐渐成为生态学和土壤学领域研究的热点之一。本文介绍了我国土壤动物区系研究进展,从群落结构、群落功能和群落演替三个方面分析了国内外土壤动物群落在森林和农业生态系统中最新研究现状,内容包括土壤环境评价、凋落物分解、土壤健康的指示作用、与污染环境的关系等几个方面,最后从全球环境变化、土壤生态系统过程和土壤生物多样性保护等三个重要领域提出土壤动物群落研究展望和建议。     

根际土壤动物及其对植物生长的影响

土壤动物是根际土壤生物的重要组成部分,对于营养物质的转化、储存和释放,土壤微生物的调节及土壤理化性质的改变都发挥着积极作用,最终影响地上植物生长及其生产力。本文综述了土壤动物在根际土壤生态系统中的作用、根际土壤动物与土壤微生物之间的关系、根际土壤动物对植物生长的影响等。就目前根际土壤动物及其对植物生长的影响研究中亟待解决的一些问题进行了探讨,并提出今后应加强研究的方向。     

武夷菌素对土壤微生物群落及抗生素抗性基因的影响

抗生素抗性基因(antibiotic resistance genes, ARGs)作为一种新型环境污染物近年来受到广泛关注。目前关于抗生素的环境污染研究主要集中于医疗和养殖业,对植物保护领域的农用抗生素环境污染研究很少。武夷菌素是一种环保、高效、广谱的农用抗生素,在农业生产中得到了广泛应用,对农作物真菌性病害具有良好的防治效果。本研究分别选取了未使用武夷菌素和使用武夷菌素的蔬菜大棚中的土壤,通过高通量测序分析了土壤中微生物群落结构,发现两份土壤中主要的微生物群落种类没有发生明显改变,但是优势菌群的丰度有显著差异。通过荧光定量PCR技术,对18个典型的抗生素抗性基因进行了检测,发现aadA、aac(3)-Ⅱ、strA、strB、aacA4、tetX、sulI和intI1 8个基因在两份土壤中的绝对含量和丰度均有显著差异,表明武夷菌素对土壤中微生物的群落结构及抗生素抗性基因的绝对含量和丰度均会造成一定影响。本研究为评估武夷菌素的环境安全性及合理正确使用武夷菌素提供了理论依据,也为其它农用抗生素的相关研究提供了借鉴。     

土壤生物与土壤污染研究前沿与展望

随着社会经济发展,人类生产活动对自然环境产生越来越广泛深刻的影响,土壤污染已成为危及生态系统稳定、农产品质量安全和人体健康的突出环境问题之一。重金属、有机污染化合物、病原菌及抗性基因等各类污染物大量进入土壤后,对土壤生物系统造成毒害作用,影响到土壤生态功能;另一方面,土壤生物如细菌、真菌、土壤动物等在一定程度上能够适应土壤污染,深刻影响着污染物在土壤中的迁移转化过程,在土壤污染修复中具有潜在重要作用。从土壤污染的生态毒理效应、土壤生物对土壤污染的响应与适应机制、污染土壤修复原理与技术等三方面综述了土壤生物与土壤污染相关研究前沿,展望了重点研究方向。     

抗生素耐药基因在畜禽粪便-土壤系统中的分布、扩散及检测方法

抗生素耐药基因作为一种新型的环境污染物已引起研究者的高度关注。畜禽养殖业长期将抗生素添加到饲料中,在促进动物生长、预防和治疗动物疾病等方面起了重要作用。这些抗生素大多数不能被动物完全吸收,在动物肠道中诱导出耐抗生素细菌和抗生素耐药基因,并随着粪便排出体外。畜禽粪便作为重要的抗生素、耐抗生素细菌和抗生素耐药基因储存库,通过堆粪、施肥等农业活动进入土壤环境中,可刺激土壤中耐抗生素细菌和抗生素耐药基因的富集。耐药基因借助于基因水平转移等方式在土壤介质中进一步传播扩散,甚至进入植物中随食物链传播,对生态环境和人类健康造成极大的威胁。为了正确评估抗生素耐药基因的生态风险,本文结合国内外相关研究,系统阐述了畜禽粪便-土壤系统中抗生素耐药基因的来源、分布及扩散机制,同时探讨了细菌耐药性的主要研究方法,指出堆肥化处理仍是目前去除抗生素耐药基因的主要手段,并对今后的研究方向进行展望。     

土霉素暴露对小麦根际抗生素抗性细菌及土壤酶活性的影响

通过培养的方法研究了土霉素暴露和小麦根际抗性细菌的数量、种类、分布特征及土壤酶活性之间的剂量效应关系。结果表明,土霉素暴露下小麦根际单一抗生素抗性细菌数量和抗土霉素—链霉素双重抗性细菌数都明显增加,且与暴露剂量呈正效应关系;同时,土壤磷酸酶、脱氢酶活性下降,但与土霉素的剂量效应关系不明显。从土霉素暴露的土壤中分离到50株抗性细菌,经形态观察、RFLP分组和16S rDNA序列测定与分析,将它们聚集在Actinobacteria、Bacilli、Alphaproteobacteria、Gammaproteobacteria 和Sphingobacteria类群。其中放线菌最多（15株）,占抗性菌总数的30 %;其次是Bacillus属细菌（9株）和Pseudomonas属细菌（8株）,分别占18 %和16 %。同时,具有抗性的人类机会致病菌Pseudomonas、Sphingomonas和Stenotrophomonas属细菌在土霉素暴露的样品中均被分离到,分别占抗性菌株总数的16 %、8 %和4 %。值得注意的是,随着土霉素暴露剂量的增加,小麦根际优势促生菌Bacillus属细菌的抗性检出率逐步降低;但具有抗生素抗性的人类机会致病菌Pseudomonas、Sphingomonas和Stenotrophomonas属细菌的检出率却明显增加,提示可能会进一步增大其机会致病性。     

Bacteriophages as antibiotic resistance genes carriers in agro-food systems

Antibiotic resistance genes (ARGs) are a global health concern. Antibiotic resistance occurs naturally, but misuse of antibiotics in humans and animals is accelerating the process of antibiotic resistance emergency, which has been aggravated by exposure to molecules of antibiotics present in clinical and agricultural settings and the engagement of many countries in water reuse especially in Middle East and North Africa region. Bacteriophages have the potential to be significant actors in ARGs transmission through the transduction process. These viruses have been detected along with ARGs in non impacted habitats and in anthropogenic impacted environments like wastewater, reclaimed water and manure amended soil as well as minimally processed food and ready to eat vegetables. The ubiquity of bacteriophages and their persistence in the environment raises concern about their involvement in ARGs transmission among different biomes and the generation of pathogenic-resistant bacteria that pose a great threat to human health. The aim of this review is to give an overview of the potential role of bacteriophages in the dissemination and the transfer of ARGs to pathogens in food production and processing and the consequent contribution to antibiotic resistance transmission through faecal oral route carrying ARGs to our dishes.     

Effect of antibiotics in the environment on microbial populations

Antibiotics act as an ecological factor in the environment that could potentially affect microbial communities. The effects include phylogenetic structure alteration, resistance expansion, and ecological function disturbance in the micro-ecosystem. Numerous studies have detected changes of microbial community structure upon addition of antibiotics in soil and water environment. However, the causal relationship between antibiotic input and resistance expansion is still under debate, with evidence either supporting or declining the contribution of antibiotics on alteration of antibiotic resistance. Effects of antibiotics on ecological functions have also been discovered, including nitrogen transformation, methanogenesis, and sulfate reduction. In the latter part, this review discusses in detail on factors that influence antibiotic effects on microbial communities in soil and aquatic environment, including concentration of antibiotics, exposure time, added substrates, as well as combined effects of multiple antibiotics. In all, recent research progress offer an outline of effects of antibiotics in the natural environment. However, questions raised in this review need further investigation in order to provide a comprehensive risk assessment on the consequence of anthropogenic antibiotic input.     

养殖动物及其相关环境耐药组的研究进展

畜牧养殖业中大量抗生素的使用,导致养殖动物及其相关环境中存在大量的耐药基因/耐药细菌。这些耐药基因可以借助基因水平转移等方式在环境中进一步扩散,甚至进入食品动物随食物链传播,对生态环境、食品安全和人类健康造成极大的威胁。随着基因组学研究手段的不断进步,养殖动物及其相关环境中耐药基因的多样性和生态学分布规律被广泛揭示。文中综述了相关领域耐药基因的研究进展,探讨了其对人体健康的潜在影响,并对未来的研究方向进行了展望。     

Research progress on distribution,migration, transformation of antibiotics and antibiotic resistance genes (ARGs) in aquatic environment

Antimicrobial and antibiotics resistance caused by misuse or overuse of antibiotics exposure is a growing and significant threat to global public health. The spread and horizontal transfer of antibiotic resistant bacteria (ARB) and antibiotic resistance genes (ARGs) by the selective pressure of antibiotics in an aquatic environment is a major public health issue. To develop a better understanding of potential ecological risks die to antibiotics and ARGs, this study mainly summarizes research progress about: (i) the occurrence, concentration, fate, and potential ecological effects of antibiotics and ARGs in various aquatic environments, (ii) the threat, spread, and horizontal gene transfer (HGT) of ARGs, and (iii) the relationship between antibiotics, ARGs, and ARB. Finally, this review also proposes future research direction on antibiotics and ARGs.     

Occurrence and patterns of antibiotic resistance in vertebrates off the Northeastern United States coast

The prevalence of antibiotic-resistant bacteria in the marine environment is a growing concern, but the degree to which marine mammals, seabirds and fish harbor these organisms is not well documented. This project sought to identify the occurrence and patterns of antibiotic resistance in bacteria isolated from vertebrates of coastal waters in the northeastern United States. Four hundred and seventy-two isolates of clinical interest were tested for resistance to a suite of 16 antibiotics. Fifty-eight percent were resistant to at least one antibiotic, while 43% were resistant to multiple antibiotics. A multiple antibiotic resistance index value ≥0.2 was observed in 38% of the resistant pathogens, suggesting exposure of the animals to bacteria from significantly contaminated sites. Groups of antibiotics were identified for which bacterial resistance commonly co-occurred. Antibiotic resistance was more widespread in bacteria isolated from seabirds than marine mammals, and was more widespread in stranded or bycaught marine mammals than live marine mammals. Structuring of resistance patterns based on sample type (live/stranded/bycaught) but not animal group (mammal/bird/fish) was observed. These data indicate that antibiotic resistance is widespread in marine vertebrates, and they may be important reservoirs of antibiotic-resistant bacteria in the marine environment.     

Antimicrobial resistance in humans,livestock and the wider environment

Antimicrobial resistance (AMR) in humans is inter-linked with AMR in other populations, especially farm animals, and in the wider environment. The relatively few bacterial species that cause disease in humans, and are the targets of antibiotic treatment, constitute a tiny subset of the overall diversity of bacteria that includes the gut microbiota and vast numbers in the soil. However, resistance can pass between these different populations; and homologous resistance genes have been found in pathogens, normal flora and soil bacteria. Farm animals are an important component of this complex system: they are exposed to enormous quantities of antibiotics (despite attempts at reduction) and act as another reservoir of resistance genes. Whole genome sequencing is revealing and beginning to quantify the two-way traffic of AMR bacteria between the farm and the clinic. Surveillance of bacterial disease, drug usage and resistance in livestock is still relatively poor, though improving, but achieving better antimicrobial stewardship on the farm is challenging: antibiotics are an integral part of industrial agriculture and there are very few alternatives. Human production and use of antibiotics either on the farm or in the clinic is but a recent addition to the natural and ancient process of antibiotic production and resistance evolution that occurs on a global scale in the soil. Viewed in this way, AMR is somewhat analogous to climate change, and that suggests that an intergovernmental panel, akin to the Intergovernmental Panel on Climate Change, could be an appropriate vehicle to actively address the problem.     

抗生素耐药防控的One Health策略

抗生素耐药作为威胁公共卫生的巨大挑战已经制约了世界经济发展。我国抗生素使用量大,是世界上抗生素滥用最严重的国家之一。文中对人群、食用动物、环境中抗生素耐药产生的原因以及抗生素耐药现状进行综述,针对我国目前抗生素使用与耐药情况,从One Health理念提出了促进抗生素的科学使用、积极探索新型抗生素研发、建立抗生素立体监测网络系统、推广抗生素耐药教育、预防感染等措施,呼吁建立跨学科、跨部门、跨地域的交流与合作,推进我国抗生素耐药防控工作进一步开展,加强环境保护,维护人类与动物的共同健康。