Distribution of plasmids in groundwater bacteria

Summary Bacteria isolated from groundwater aquifer core materials of pristine aquifers at Lula and Pickett, OK, and from a site with a history of aromatic hydrocarbon contamination and natural renovation located at Conroe, TX, were screened for the presence of plasmid DNA by alkaline or enzyme lysis and agarose gel techniques. Some of the isolates were also subjected to taxonomic tests in addition to screening for resistance to antibiotics, tolerance to heavy metal salts, and bacteriocin production. There was no significant difference in the distribution of the traits usually associated with plasmid occurrence in isolates from the three sites. These traits, which occurred at low frequencies, were not restricted to plasmid-bearing strains of the communities. Plasmids were found in isolates from all three sites, but on the average there was a significantly higher percentage of isolates containing plasmids in the samples from Conroe (19.4%) than from either Lula (1.8%) or Pickett (7.7%). The sizes of the plasmids found ranged between 3.5 and 202 kilobases but, for the Conroe samples, many more isolates (67%) contained smaller plasmids (<10 kb) rather than larger ones. No plasmids were found in bacteria recovered from naturally renovated aquifer material at the Conroe site.     

乳粉中嗜热菌污染研究进展

嗜热菌是乳粉中的常见污染菌,是影响乳粉品质的一个重要因素。本文综述乳粉中嗜热菌的种类、污染源对乳品工业的危害及其控制手段的研究进展,为国内相关领域研究提供参考。     

Organic and inorganic human-induced contamination of Posidonia oceanica meadows

In coastal environments, plants are used for phytoremediation of contamination. Organic and inorganic contaminants may be due to natural and/or anthropogenic sources. The aim of this study is to compare inorganic (trace metal) and organic (PAH) contamination in Posidonia oceanica and to analyse the relationship between these types of pollutants indeed very few studies have been interested in their correlations and common sources. P. oceanica leaves were collected in two sites exhibiting different levels of human-induced pressure. Higher values were recorded in the more polluted site (Toulon) for trace metals (Ag, Hg, Pb) as well as for PAHs (Medium Molecular Weight and High Molecular Weight) due to the presence of the city and/or harbour in proximity. For the first time in a coastal environment, correlations were observed between metals and PAHs.     

Cryovial with partial membrane sealing can prevent liquid nitrogen penetration in submerged storage

Cryopreservation is one of the fundamental techniques in life science. To preserve the viability of cells and tissues, many researchers use plastic cryogenic vials and immerse them into liquid nitrogen for long-term storage. However, the non-sterile liquid nitrogen usually infiltrates into the vials and may cause a high rate of microbial contamination, and even some explosive incidents upon retrieval. To prevent these drawbacks while retaining the benefit of constant ultra-low temperature in submerged liquid nitrogen, we used a heat-sealable membrane to cover the upper portion of vials. After heat-sealing, the vials were completely free of liquid nitrogen penetration in the submerging test. Moreover, the sealing process did not affect the cell viability. This modified protocol provides an easy and efficient tool to ensure the integrity of biospecimens in long-term storage without interfering with existing cryobox storage systems.     

Does contamination buildup limit throughput for automated cryoEM?

The development of automated systems for data acquisition in cryo electron microscopy has enabled the possibility of acquiring very large number of images from a single specimen grid. We have demonstrated that over images of 250,000 single particles can be acquired in a 24 h period. This has raised questions as to whether contamination buildup on the specimen limits the quality of the data that can be acquired during these long duration experiments and also whether the data acquisition session could be extended to allow acquisition of more than 1,000,000 particles. We report here a systematic characterization of contamination of specimens maintained for long periods of time at liquid nitrogen temperatures using standard side entry cryo stages. As part of this characterization we developed a more reliable method for accurately estimating specimen ice thickness. Using the method, we were able to calibrate image contrast against ice thickness under a variety of magnifications, objective aperture positions, and defoci, and demonstrated the strong dependence of the calibration curve on these parameters. The results show the anti-contamination aperture is, as expected, critical to the prevention of contamination and that loading film into the microscope dramatically increases the contamination rate, particularly in the first 3 h after the insertion of the film box. In the absence of film, we were able to reproducibly demonstrate that the contamination rate can be limited to a rate of approximately 1 angstrom/h providing reassurance that contamination will not be a major limiting factor for long term cryoEM experiments if a CCD camera is used for the imaging.     

肉及肉制品中空肠弯曲菌的污染情况调查

我们对辽宁地区肉及肉制品进行弯曲杆菌属检查,发现12.9%(23/177)的样品为弯曲杆菌属阳性.经API Campy鉴定系统鉴定,其中26.1%(6/23)为空肠弯曲菌(C.jejuni)阳性,同时发现1株大肠弯曲菌.该调查证实,辽宁地区进出口的肉及肉制品中,存在空肠弯曲菌的污染,如果销售不当或再加工卫生不良,会对消费者的健康构成潜在威胁.     

A manipulative experiment to evaluate predicted changes in intertidal, macro-faunal assemblages after contamination by heavy metals

Concentrations of heavy metals (zinc, copper and lead) were manipulated experimentally to test the hypotheses about effects on intertidal, soft-sediment assemblages of animals in two sand-flats in Port Hacking, Australia. Hypotheses about changes in the structure and composition of whole assemblages and changes in mean abundance and variability of individual taxa were tested. Specific hypotheses were derived a priori from repeated observations of assemblages in urban and non-urban areas of Port Hacking.After manipulation, concentrations of metals were similar to those in sediments near urban areas. Nevertheless, responses of assemblages to the increased concentrations of metals were weak. Polychaetes, spionids and amphipods responded to experimental treatments. Changes were, however, not consistent among times and places and generally not in agreement with what had been predicted. Significant spatial and temporal variability were detected for all variables investigated. Increased concentrations of metals did not affect variability or overall structure of assemblages. Thus, there was little evidence that increased concentrations of metals caused benthic assemblages in pristine areas to become more similar to those in areas contaminated by human activities.Several potential explanations for the discrepancy between previously observed correlative patterns and the results presented here are discussed. These include a critical assessment of different aspects of the experimental study, such as lack of statistical power, insufficient basis for prediction, artefacts due to experimental procedures and issues to do with the difference between evidence based on correlation and manipulation. Explicit comparisons showed that there were significant effects of physical disturbance due to repeated sampling and that assemblages of animals at the start of the experiment were different from those previously observed in uncontaminated areas. These observations were surprising and made interpretation more difficult. Nevertheless, it is possible that the metals investigated really contribute only marginally to previously observed differences between urban and non-urban areas. Repeated comparisons between observations of patterns and manipulative experiments like these can only improve the basis for prediction and the power of current mechanistic models.     

Purity of the sacred lotus, or escape from contamination in biological surfaces

The microrelief of plant surfaces, mainly caused by epicuticular wax crystalloids, serves different purposes and often causes effective water repellency. Furthermore, the adhesion of contaminating particles is reduced. Based on experimental data carried out on microscopically smooth (Fagus sylvatica L., Gnetum gnemon L., Heliconia densiflora Verlot, Magnolia grandiflora L.) and rough water-repellent plants (Brassica oleracea L., Colocasia esculenta (L.) Schott., Mutisia decurrens Cav., Nelumbo nucifera Gaertn.), it is shown here for the first time that the interdependence between surface roughness, reduced particle adhesion and water repellency is the keystone in the self-cleaning mechanism of many biological surfaces. The plants were artificially contaminated with various particles and subsequently subjected to artificial rinsing by sprinkler or fog generator. In the case of water-repellent leaves, the particles were removed completely by water droplets that rolled off the surfaces independent of their chemical nature or size. The leaves of N. nucifera afford an impressive demonstration of this effect, which is, therefore, called the “Lotus-Effect” and which may be of great biological and technological importance. Received: 19 August 1996 / Accepted: 12 November 1996